NO28G00620.1, NO28G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00620.1
Unique NameNO28G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2576
Alignment locationchr28:218916..221595 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:218916..221595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00620NO28G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00620.1NO28G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00620.1.cds1NO28G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00620.1.cds2NO28G00620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00620.1 ID=NO28G00620.1|Name=NO28G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp
CAACAGGGAACACTCATTGAGGTATATGCAGCTGTAGTGCCTGGGTAAGG
CAGTTATGCAGCCGTAACGGACCACAAACGATGCTTTTCCTTCCTCCCGC
TAAGTACGACACCTGCCTAGCACGTCTTCCTCGGCCTCCTTCATCGCTCC
TCGATTTCCTACCCTTCCTACCCTTTCTATCAGCCTGCATACCTGCCAAT
AATAAGCTCTTGAAAGCAGGGGCACAACAGCTGTTTCAGCCCCTATTCCG
AGTCAAATCAACAAATGCAGCCATGCTGACCAGTAGCTGGTGTCAGAATC
CAGCACAACAGCCGCCGCTGCTCCCTCTATTGGCGCCCTTGTCCTCGTCG
TCCCCGTCGGACCCGTTGCACCTCGATGTGACTGTCGGCCCGTCACCATT
GAGGGAACAGCCGCAGGAACAGCAGGACCAAGGTAGAGCAGTGTTTTCTG
CGACAAAGCAGGAGTGGGTGCTCCGAAAACACGAGCAACACTTGCACAGG
CAGCAGCAGGAAAGGCAGCAGAAGAGAGTGGAGGCAAATTACCAAGTGCC
GCAGGAAAGAGAAGAGGTCGAGAAAAGGCAACGAGACATCCACGCTGATG
TCGAGCAGCAGCGACAAAAATTTAGGGAGGACCAGCTGCAGCTGCTAGAT
CAGCGTCAAGGAAAGCAGCTTGTGCAGCAGCAGCACCACCACCACCACCA
ACAACAACGGCAGCAGCAGCAAAAGCTGCAGATGTTGTGGTCTCCACAAA
ATTCGCAGAAGCATATTTTGACACCCTTCCAGCGACTGGTGCTCCGGCAG
CAGCAGCAGCTACATCAAGAGCCACTCATTTTTCTTCCCTCCAACTGCCC
TTCCAAGTTCCAGCAGCAGCGACAGCAGGAGGAGGAGCAGTCATCTCCCT
TTGTAGCTTTATCAGCAGCATGTGAAGGGCATTTCTTGGTTGAGAGATCA
AAGAGGGAGGAGGAAAGGGGAGAGGGAGAGCAGGGAAAGGACGGCTCCAC
GAGCGGCATACAAGAGGGATGGATGACCTTCCCTCCCATTCTTCCCGCCA
TTGCTGCTGCTACGCCTGATCACGATACTGCTCTTGCTTCTTCTGCTGTA
TTTGGTGAAGCGAGAGGAGTGAAGCGAACACGCATGGAGGGAAGAGGACA
GCGGGGAATGATCGGAGAGAAAGGAAGCGGAGGAAGAGGAGGACGGTCAC
CAGAAAGGGGCACTGTCCCAAGAGAAAACCAGTTTCAACTTCACAGTCCA
AGTGGTAGTGGCAGCAGTTTGAGCCGCAGCAGCTTTACTTGCATGAAGGG
CCGTGGCACCTGCCATAAATACCCGGGTGAAAAGCATGCCAGGCGGGCTC
CAAGGGGGCCTCTAGCGTCGCCGGCCTACCCGACGCCCCTCCTCGCGAGA
CGTATGGTGCTTGGTGAGAACAATCGACTCACACTCCAGGACGAACAATA
TCGACAGCAGCAGCAGCAACAGCAGCAGCAGACACATCCTGGATCCTTCC
TTTTAAAGAGCAGCAGCACCAGCACCGTCAGCAGCTTTGGCAGCACCATG
AGAGGAGGAGGAGATGAACTTCTAAATCTTTTAATGGGCTTCGACCGCAT
CAACGACTCGTCTTCTCATTGTTGTACTTGTCGTGCTTCTCCTTCCTGTT
CTTCTTCCCCTTCATCTTATGCGTCATCAAGTGGCATGCTTTTTTACCGA
CGGGAGAACAACCGCTTAACGACCATTATTCGATCCCTTGAAGGAAAGCT
GTTCACCCTGACTTCTCAACTAGAGAACCAGCGGCTGCAGCAGGAGGAAC
AGCGAAAGCAGCAGGAGATTGAGTCACTTGCAGACGGGTGGTGGTGTCAC
GAACTGCTTTTCTCCTCCCTTCCATACTCCCTTCCTTCCTCCCCATCCTC
TCTTCTGCCGCGTGATGACGTCGCGCTGGAAGAGAGCTTGGACCGATTTT
TGGTTGAGATGTTGAACGGCTTCAACGGCGAAGGCATGCTTTGAGAAGAA
CGTTTATTCCCCATCTCATTTTCGTCCTCTCTCACTCTCTCCATTTCTCC
TCCCTCCCTCTTCCTTCCCTCACTGCACGAGGTGAAATCGACTTAGAAAA
TAGGAGCATGATAAGGAGCATGATGAACACTCAATCAAGACGACTACCAC
CTTGGTAGAGTGAGAGAGTGTGTATCTGTTTATCTATCTATCTACATTGA
AACATGCCAGTAACTTTCCAGCAACCAAGCGACCAGATGCACGCCTCGAT
TCCTCATGAAACCAGGCCAAGCCAAGCCGAGCAACACTAGATAAGGAAAC
CAACGACCGGAGAAGGCAAGAAGGAGAGTGGACCTGGTAGAACGCGAATT
ACATCGTAACTTTATACGTGCACAGACAAATATACTCAAACATGACCCCT
CATCTCGATGATATGTTGAACAAAGCACAAAGCAAGACAATAAAAGCTGA
ACAAGAGAGGAGAGAGAGAAGAGGAAGCAATGGCCTCTCAATAATAGGTT
CACTTTAAAATGTGTGGAAAGTAAAATATCCCGCTTCACACCTACGACTC
CAGCTTTTCAAAAACGACAAAGATTC
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protein sequence of NO28G00620.1

>NO28G00620.1-protein ID=NO28G00620.1-protein|Name=NO28G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MLFLPPAKYDTCLARLPRPPSSLLDFLPFLPFLSACIPANNKLLKAGAQQ
LFQPLFRVKSTNAAMLTSSWCQNPAQQPPLLPLLAPLSSSSPSDPLHLDV
TVGPSPLREQPQEQQDQGRAVFSATKQEWVLRKHEQHLHRQQQERQQKRV
EANYQVPQEREEVEKRQRDIHADVEQQRQKFREDQLQLLDQRQGKQLVQQ
QHHHHHQQQRQQQQKLQMLWSPQNSQKHILTPFQRLVLRQQQQLHQEPLI
FLPSNCPSKFQQQRQQEEEQSSPFVALSAACEGHFLVERSKREEERGEGE
QGKDGSTSGIQEGWMTFPPILPAIAAATPDHDTALASSAVFGEARGVKRT
RMEGRGQRGMIGEKGSGGRGGRSPERGTVPRENQFQLHSPSGSGSSLSRS
SFTCMKGRGTCHKYPGEKHARRAPRGPLASPAYPTPLLARRMVLGENNRL
TLQDEQYRQQQQQQQQQTHPGSFLLKSSSTSTVSSFGSTMRGGGDELLNL
LMGFDRINDSSSHCCTCRASPSCSSSPSSYASSSGMLFYRRENNRLTTII
RSLEGKLFTLTSQLENQRLQQEEQRKQQEIESLADGWWCHELLFSSLPYS
LPSSPSSLLPRDDVALEESLDRFLVEMLNGFNGEGML*
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mRNA from alignment at chr28:218916..221595+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00620.1 ID=NO28G00620.1|Name=NO28G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2680bp|location=Sequence derived from alignment at chr28:218916..221595+ (Nannochloropsis oceanica)
CAACAGGGAACACTCATTGAGGTATATGCAGCTGTAGTGCCTGGGTAAGG CAGTTATGCAGCCGTAACGGACCACAAACGATGCTTTTCCTTCCTCCCGC TAAGTACGACACCTGCCTAGCACGTCTTCCTCGGCCTCCTTCATCGCTCC TCGATTTCCTACCCTTCCTACCCTTTCTATCAGCCTGCATACCTGCCAAT AATAAGCTCTTGAAAGCAGGGGCACAAGTAAGATAGGATAACGGGATGAG GTGCAAGAAGATAGCCAACAAATCATGCCTTCGCCTTCCCTCAACCACCA CCATCACCACCATCACCACCATCACGAGCAGCAGCTGTTTCAGCCCCTAT TCCGAGTCAAATCAACAAATGCAGCCATGCTGACCAGTAGCTGGTGTCAG AATCCAGCACAACAGCCGCCGCTGCTCCCTCTATTGGCGCCCTTGTCCTC GTCGTCCCCGTCGGACCCGTTGCACCTCGATGTGACTGTCGGCCCGTCAC CATTGAGGGAACAGCCGCAGGAACAGCAGGACCAAGGTAGAGCAGTGTTT TCTGCGACAAAGCAGGAGTGGGTGCTCCGAAAACACGAGCAACACTTGCA CAGGCAGCAGCAGGAAAGGCAGCAGAAGAGAGTGGAGGCAAATTACCAAG TGCCGCAGGAAAGAGAAGAGGTCGAGAAAAGGCAACGAGACATCCACGCT GATGTCGAGCAGCAGCGACAAAAATTTAGGGAGGACCAGCTGCAGCTGCT AGATCAGCGTCAAGGAAAGCAGCTTGTGCAGCAGCAGCACCACCACCACC ACCAACAACAACGGCAGCAGCAGCAAAAGCTGCAGATGTTGTGGTCTCCA CAAAATTCGCAGAAGCATATTTTGACACCCTTCCAGCGACTGGTGCTCCG GCAGCAGCAGCAGCTACATCAAGAGCCACTCATTTTTCTTCCCTCCAACT GCCCTTCCAAGTTCCAGCAGCAGCGACAGCAGGAGGAGGAGCAGTCATCT CCCTTTGTAGCTTTATCAGCAGCATGTGAAGGGCATTTCTTGGTTGAGAG ATCAAAGAGGGAGGAGGAAAGGGGAGAGGGAGAGCAGGGAAAGGACGGCT CCACGAGCGGCATACAAGAGGGATGGATGACCTTCCCTCCCATTCTTCCC GCCATTGCTGCTGCTACGCCTGATCACGATACTGCTCTTGCTTCTTCTGC TGTATTTGGTGAAGCGAGAGGAGTGAAGCGAACACGCATGGAGGGAAGAG GACAGCGGGGAATGATCGGAGAGAAAGGAAGCGGAGGAAGAGGAGGACGG TCACCAGAAAGGGGCACTGTCCCAAGAGAAAACCAGTTTCAACTTCACAG TCCAAGTGGTAGTGGCAGCAGTTTGAGCCGCAGCAGCTTTACTTGCATGA AGGGCCGTGGCACCTGCCATAAATACCCGGGTGAAAAGCATGCCAGGCGG GCTCCAAGGGGGCCTCTAGCGTCGCCGGCCTACCCGACGCCCCTCCTCGC GAGACGTATGGTGCTTGGTGAGAACAATCGACTCACACTCCAGGACGAAC AATATCGACAGCAGCAGCAGCAACAGCAGCAGCAGACACATCCTGGATCC TTCCTTTTAAAGAGCAGCAGCACCAGCACCGTCAGCAGCTTTGGCAGCAC CATGAGAGGAGGAGGAGATGAACTTCTAAATCTTTTAATGGGCTTCGACC GCATCAACGACTCGTCTTCTCATTGTTGTACTTGTCGTGCTTCTCCTTCC TGTTCTTCTTCCCCTTCATCTTATGCGTCATCAAGTGGCATGCTTTTTTA CCGACGGGAGAACAACCGCTTAACGACCATTATTCGATCCCTTGAAGGAA AGCTGTTCACCCTGACTTCTCAACTAGAGAACCAGCGGCTGCAGCAGGAG GAACAGCGAAAGCAGCAGGAGATTGAGTCACTTGCAGACGGGTGGTGGTG TCACGAACTGCTTTTCTCCTCCCTTCCATACTCCCTTCCTTCCTCCCCAT CCTCTCTTCTGCCGCGTGATGACGTCGCGCTGGAAGAGAGCTTGGACCGA TTTTTGGTTGAGATGTTGAACGGCTTCAACGGCGAAGGCATGCTTTGAGA AGAACGTTTATTCCCCATCTCATTTTCGTCCTCTCTCACTCTCTCCATTT CTCCTCCCTCCCTCTTCCTTCCCTCACTGCACGAGGTGAAATCGACTTAG AAAATAGGAGCATGATAAGGAGCATGATGAACACTCAATCAAGACGACTA CCACCTTGGTAGAGTGAGAGAGTGTGTATCTGTTTATCTATCTATCTACA TTGAAACATGCCAGTAACTTTCCAGCAACCAAGCGACCAGATGCACGCCT CGATTCCTCATGAAACCAGGCCAAGCCAAGCCGAGCAACACTAGATAAGG AAACCAACGACCGGAGAAGGCAAGAAGGAGAGTGGACCTGGTAGAACGCG AATTACATCGTAACTTTATACGTGCACAGACAAATATACTCAAACATGAC CCCTCATCTCGATGATATGTTGAACAAAGCACAAAGCAAGACAATAAAAG CTGAACAAGAGAGGAGAGAGAGAAGAGGAAGCAATGGCCTCTCAATAATA GGTTCACTTTAAAATGTGTGGAAAGTAAAATATCCCGCTTCACACCTACG ACTCCAGCTTTTCAAAAACGACAAAGATTC
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Coding sequence (CDS) from alignment at chr28:218916..221595+

>NO28G00620.1 ID=NO28G00620.1|Name=NO28G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at chr28:218916..221595+ (Nannochloropsis oceanica)
ATGCTTTTCCTTCCTCCCGCTAAGTACGACACCTGCCTAGCACGTCTTCC
TCGGCCTCCTTCATCGCTCCTCGATTTCCTACCCTTCCTACCCTTTCTAT
CAGCCTGCATACCTGCCAATAATAAGCTCTTGAAAGCAGGGGCACAACAG
CTGTTTCAGCCCCTATTCCGAGTCAAATCAACAAATGCAGCCATGCTGAC
CAGTAGCTGGTGTCAGAATCCAGCACAACAGCCGCCGCTGCTCCCTCTAT
TGGCGCCCTTGTCCTCGTCGTCCCCGTCGGACCCGTTGCACCTCGATGTG
ACTGTCGGCCCGTCACCATTGAGGGAACAGCCGCAGGAACAGCAGGACCA
AGGTAGAGCAGTGTTTTCTGCGACAAAGCAGGAGTGGGTGCTCCGAAAAC
ACGAGCAACACTTGCACAGGCAGCAGCAGGAAAGGCAGCAGAAGAGAGTG
GAGGCAAATTACCAAGTGCCGCAGGAAAGAGAAGAGGTCGAGAAAAGGCA
ACGAGACATCCACGCTGATGTCGAGCAGCAGCGACAAAAATTTAGGGAGG
ACCAGCTGCAGCTGCTAGATCAGCGTCAAGGAAAGCAGCTTGTGCAGCAG
CAGCACCACCACCACCACCAACAACAACGGCAGCAGCAGCAAAAGCTGCA
GATGTTGTGGTCTCCACAAAATTCGCAGAAGCATATTTTGACACCCTTCC
AGCGACTGGTGCTCCGGCAGCAGCAGCAGCTACATCAAGAGCCACTCATT
TTTCTTCCCTCCAACTGCCCTTCCAAGTTCCAGCAGCAGCGACAGCAGGA
GGAGGAGCAGTCATCTCCCTTTGTAGCTTTATCAGCAGCATGTGAAGGGC
ATTTCTTGGTTGAGAGATCAAAGAGGGAGGAGGAAAGGGGAGAGGGAGAG
CAGGGAAAGGACGGCTCCACGAGCGGCATACAAGAGGGATGGATGACCTT
CCCTCCCATTCTTCCCGCCATTGCTGCTGCTACGCCTGATCACGATACTG
CTCTTGCTTCTTCTGCTGTATTTGGTGAAGCGAGAGGAGTGAAGCGAACA
CGCATGGAGGGAAGAGGACAGCGGGGAATGATCGGAGAGAAAGGAAGCGG
AGGAAGAGGAGGACGGTCACCAGAAAGGGGCACTGTCCCAAGAGAAAACC
AGTTTCAACTTCACAGTCCAAGTGGTAGTGGCAGCAGTTTGAGCCGCAGC
AGCTTTACTTGCATGAAGGGCCGTGGCACCTGCCATAAATACCCGGGTGA
AAAGCATGCCAGGCGGGCTCCAAGGGGGCCTCTAGCGTCGCCGGCCTACC
CGACGCCCCTCCTCGCGAGACGTATGGTGCTTGGTGAGAACAATCGACTC
ACACTCCAGGACGAACAATATCGACAGCAGCAGCAGCAACAGCAGCAGCA
GACACATCCTGGATCCTTCCTTTTAAAGAGCAGCAGCACCAGCACCGTCA
GCAGCTTTGGCAGCACCATGAGAGGAGGAGGAGATGAACTTCTAAATCTT
TTAATGGGCTTCGACCGCATCAACGACTCGTCTTCTCATTGTTGTACTTG
TCGTGCTTCTCCTTCCTGTTCTTCTTCCCCTTCATCTTATGCGTCATCAA
GTGGCATGCTTTTTTACCGACGGGAGAACAACCGCTTAACGACCATTATT
CGATCCCTTGAAGGAAAGCTGTTCACCCTGACTTCTCAACTAGAGAACCA
GCGGCTGCAGCAGGAGGAACAGCGAAAGCAGCAGGAGATTGAGTCACTTG
CAGACGGGTGGTGGTGTCACGAACTGCTTTTCTCCTCCCTTCCATACTCC
CTTCCTTCCTCCCCATCCTCTCTTCTGCCGCGTGATGACGTCGCGCTGGA
AGAGAGCTTGGACCGATTTTTGGTTGAGATGTTGAACGGCTTCAACGGCG
AAGGCATGCTTTGA
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Synonyms
Publications