NO28G00420, NO28G00420 (gene) Nannochloropsis oceanica

Overview
NameNO28G00420
Unique NameNO28G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2451
Alignment locationchr28:161296..163746 +

Link to JBrowse

Properties
Property NameValue
Description3-oxoacyl-ACP synthase 3
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:161296..163746 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0006633fatty acid biosynthetic process
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:00043153-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR016039Thiolase-like
IPR013747ACP_syn_III_C
IPR013751ACP_syn_III
Homology
BLAST of NO28G00420 vs. NCBI_GenBank
Match: CBN77814.1 (beta-ketoacyl synthase [Ectocarpus siliculosus])

HSP 1 Score: 448.7 bits (1153), Expect = 1.900e-122
Identity = 226/342 (66.08%), Postives = 278/342 (81.29%), Query Frame = 0
Query:   72 GKSVAGRSFLRSKPIGVGSAAPADVIKNTDLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEGKDIDVVILATSSPDDLFGDATSVAAAVGATGAVAFDLTAACSGFLFGVVTASQFLHSGCYRHALVVGADALSRWVDWEDRNSCILFGDGAGAVVLTVAEGDADSGVLGFAMHSDGTGQGDLNLQFAKDESQSPPEINAVTPYKGKYNNIAMNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVADRLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGAGLSWGSAIIRWQG 414
            G+ V G+S LRS+ +G+GS+AP  V+ N DLE +VETSDEWI TRTGI +R +L  G  +  LA +A+ +AL+ AG++G DID+V++ATSSPDD+FGDA  VA +VGA  AVAFDLTAACSGFLF +VTASQF+HSG Y+  LV+GADALSRWVDW+DRNSCILFGDGAGA+VL  AEGD  +G+LGF++HSDG G   L L +  +E +   +  AVT  KG+Y ++ M G+EVYKFATR+VP V+ EAL NAG+GVE VDWLLLHQANIRIM+ VA RLGL  DK++TNL++YGNTSAGSIPLALDEAV+SGKVK GD+IACAGFGAGLSWG+A+IRW G
Sbjct:   64 GEPVPGKSMLRSRAVGIGSSAPDTVLPNADLEELVETSDEWIATRTGIRKRHLLKEGEGVTDLAISASNKALKLAGVDGADIDLVVMATSSPDDMFGDACVVANSVGAKSAVAFDLTAACSGFLFALVTASQFIHSGTYKKCLVIGADALSRWVDWDDRNSCILFGDGAGAMVLEAAEGDDTAGLLGFSLHSDGGGHKSLTLGYDGEERKLGDKY-AVT--KGRYGSLGMEGREVYKFATREVPRVLTEALDNAGMGVEDVDWLLLHQANIRIMETVASRLGLPMDKVITNLAEYGNTSAGSIPLALDEAVRSGKVKSGDVIACAGFGAGLSWGAAVIRWSG 402          
BLAST of NO28G00420 vs. NCBI_GenBank
Match: KOO24051.1 (3-oxoacyl-(acyl-carrier-protein) synthase iii (beta-ketoacyl-acp synthase iii)(kas iii) [Chrysochromulina sp. CCMP291])

HSP 1 Score: 416.8 bits (1070), Expect = 8.000e-113
Identity = 216/342 (63.16%), Postives = 263/342 (76.90%), Query Frame = 0
Query:   72 GKSVAGRSFLRSKPIGVGSAAPADVIKNTDLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEGKDIDVVILATSSPDDLFGDATSVAAAVGATGAVAFDLTAACSGFLFGVVTASQFLHSGCYRHALVVGADALSRWVDWEDRNSCILFGDGAGAVVLTVAEGDADSGVLGFAMHSDGTGQGDLNLQFAKDESQSPPEINAVTPYKGKYNNIAMNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVADRLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGAGLSWGSAIIRWQG 414
            G  VA    LR+  IG+G+AAP   + N++LE VV+TSDEWI  RTGIS R ++     +  LA+ AA  ALE+AG++  ++ +VI+ATSSPDDLFGDA  VA +VGAT AVAFDLTAACSGFLFG+ TASQFLH+G Y+ A+V+GADALSRWVDW DRN+C+LFGDGAGAVVL        +G+LG+ MHS+G G+ DLNL +   ES+        T  KG Y  IAMNGKEVYKFAT  VP V++EAL NAGL  + VDWLLLHQANIRIM+ VA +LG+  +K++TNL++YGNTSAGSIPLAL+EAVK+GKVK GD+IACAGFGAGLSWGSAIIRW G
Sbjct:   41 GGVVAAHGELRASIIGIGAAAPERRVPNSELEKVVDTSDEWISQRTGISCRHLIAPDQGLADLASKAAKEALEHAGVDPLEVGLVIMATSSPDDLFGDAAFVARSVGATNAVAFDLTAACSGFLFGINTASQFLHNGAYKTAIVIGADALSRWVDWTDRNTCVLFGDGAGAVVLQQTAAGQPAGILGYEMHSNGAGRSDLNLGY-NGESKDLGTTIPATVTKGAYTPIAMNGKEVYKFATTCVPEVLKEALDNAGLTADDVDWLLLHQANIRIMETVAKKLGIPMEKVITNLAEYGNTSAGSIPLALNEAVKAGKVKPGDVIACAGFGAGLSWGSAIIRWSG 381          
BLAST of NO28G00420 vs. NCBI_GenBank
Match: XP_002295320.1 (3-oxoacyl-synthase [Thalassiosira pseudonana CCMP1335] >EED87386.1 3-oxoacyl-synthase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 398.7 bits (1023), Expect = 2.300e-107
Identity = 206/336 (61.31%), Postives = 255/336 (75.89%), Query Frame = 0
Query:   81 LRSKPIGVGSAAPADVIKNTDLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEGKDIDVVILATSSPDDLFGDATSVAAAVG-ATGAVAFDLTAACSGFLFGVVTASQFLHSGCYRHALVVGADALSRWVDWEDRNSCILFGDGAGAVVLTVAEGDADS----GVLGFAMHSDGTGQGDLNLQFAKDESQSPPEINAVTPYKGKYNNIAMNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVADRLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGAGLSWGSAIIRW 412
            L   PIG+GS AP   + N DLE+V +TSDEWI TRTGI  RR+L     +R L  TA   A+  AG+  +DI +VI  TSSPDDLFGDA S+AAAVG  T  VAFDLTAACSGFLFG+VTA QFL +G  +HALV+GADAL+RWVDW+DRNSCILFGDGAGA+VL+ A G++DS    G+LG+AMHS+G G  DL   +  +  +          + G Y+ + MNG++VY FATR+VP V+EEA+  AG+ V+QVD LLLHQANIRIM+VVA+RLG+  +K++TNL  YGNTSA SIPLALDEAV+SG+VKKGD+IACAGFGAGLSWG+AI++W
Sbjct:   45 LNISPIGIGSCAPTTALTNFDLETVHDTSDEWIRTRTGIEMRRVLVHEETLRSLGITAGRNAISMAGVNPEDIGLVICCTSSPDDLFGDAPSIAAAVGCTTNTVAFDLTAACSGFLFGIVTAGQFLENGAAKHALVIGADALTRWVDWDDRNSCILFGDGAGAMVLS-ANGNSDSEVGPGILGYAMHSNGKGYDDLKCIYRGEPKKITTPGEGTVVHDGSYDLMTMNGRKVYSFATREVPAVLEEAMEQAGITVDQVDHLLLHQANIRIMEVVAERLGMPMEKVITNLYKYGNTSAASIPLALDEAVRSGRVKKGDVIACAGFGAGLSWGAAILKW 379          
BLAST of NO28G00420 vs. NCBI_GenBank
Match: XP_005794573.1 (hypothetical protein EMIHUDRAFT_447603 [Emiliania huxleyi CCMP1516] >EOD42144.1 hypothetical protein EMIHUDRAFT_447603 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 392.9 bits (1008), Expect = 1.200e-105
Identity = 208/337 (61.72%), Postives = 252/337 (74.78%), Query Frame = 0
Query:   76 AGRSFLRSKPIGVGSAAPADVIKNTDLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEGKDIDVVILATSSPDDLFGDATSVAAAVGATGAVAFDLTAACSGFLFGVVTASQFLHSGCYRHALVVGADALSRWVDWEDRNSCILFGDGAGAVVLTVA-EGDADSGVLGFAMHSDGTGQGDLNLQFAKDESQSPPEINAVTPYKGKYNNIAMNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVADRLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGAGLSWGSAIIRW 412
            A R  LRS+ +G+GSAAP  V+ N  L SVVETSD+WI  RTGI QR +L  G  +  LAA AA +ALE++G++   +++V+LATSSPDDLFGDA  VA  VGATGAVAFDLTAACSGFLFGV TASQFLH+G Y+ ALV+GADALSRWVDW DRN+C+LFGDGAGAVVL  A +G+ + GVLGFA+HS+G G+ DL L +A  E    P  +  +   G Y  I+M GKEVYKFAT +VP               +VDWLLLHQANIRIM+ VA +L +   K++ NL +YGNTSAGSIPLALD AV++GKVKKGD+IA AGFGAGLSWGSA++RW
Sbjct:   39 AHRGALRSRLVGIGSAAPDTVVTNEQLSSVVETSDDWISQRTGIRQRHLLAPGEGLSTLAARAAQKALESSGVDAASVELVVLATSSPDDLFGDAAHVAREVGATGAVAFDLTAACSGFLFGVTTASQFLHTGAYKTALVIGADALSRWVDWSDRNTCVLFGDGAGAVVLQAAVDGEGEEGVLGFALHSNGAGRPDLCLGYAGAER---PLASVASVTTGTYAPISMVGKEVYKFATSRVP---------------EVDWLLLHQANIRIMETVAKKLKIPMSKVINNLDEYGNTSAGSIPLALDAAVRAGKVKKGDVIAMAGFGAGLSWGSAVVRW 357          
BLAST of NO28G00420 vs. NCBI_GenBank
Match: AQS99299.1 (3-ketoacyl acyl carrier protein synthase III [Gambierdiscus polynesiensis])

HSP 1 Score: 381.3 bits (978), Expect = 3.700e-102
Identity = 210/371 (56.60%), Postives = 255/371 (68.73%), Query Frame = 0
Query:   67 EGSGTGKSVAGRSFLRSKPIGVGSAAPADVIKNTDLESVVETSDEWIFTRTGISQRRIL--------PSGGQ--------IRGLAATAAARALENAGLEGKDIDVVILATSSPDDLFGDATSVAAAVGATGAVAFDLTAACSGFLFGVVTASQFLHSGCYRHALVVGADALSRWVDWEDRNSCILFGDGAGAVVLTVAEGDAD-SGVLGFAMHSDGTGQGDLNLQFAKDESQSPPEINAVTP---------YKGKYNNIAMNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVADRLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGAGLSWGSAIIRW 412
            EG G   S +G S L   P+GVG A P   I N DL+  V+ SD WI TRTG++ R +L          GG         + GLA++AA  ALE +G +  D+D+V++ TSSP+DLFGDAT+VA+ +GA  AVAFDLTAACSGFLFG+VTASQFLH+G +R ALV+GADALSRWVDW DRN+ ILFGDGAGA+VL   E  A+ SG+LGFAMHSDG G   L L F      SP E+NA  P          KG Y +I MNG EVY FA  +VP VI EAL NAGL V QVDWL+LHQAN+RI++ VA RL +   K++TN+  +GNTSA SIPLAL EAV+ G  K GD+I CAGFGAGLSWG+A++RW
Sbjct: 1028 EGGGRSSSSSGSSHLLCVPLGVGCAVPKLCITNADLQCFVDKSDGWIRTRTGVASRHVLGCAHAEGGDDGGDSLGDRDAGLVGLASSAAEAALEFSGCKAADLDLVLMCTSSPEDLFGDATTVASKIGANNAVAFDLTAACSGFLFGIVTASQFLHTGAHRRALVIGADALSRWVDWGDRNTSILFGDGAGALVLAAVEDGAESSGLLGFAMHSDGCGHKHLRLPFC----GSPHELNAPKPMMQQQPLSLQKGGYGSIIMNGSEVYAFAVERVPQVILEALDNAGLSVAQVDWLVLHQANVRIIEEVARRLWIPSSKLITNIHKHGNTSAASIPLALAEAVERGDAKFGDVIVCAGFGAGLSWGAAVLRW 1394          
BLAST of NO28G00420 vs. NCBI_GenBank
Match: GAX27375.1 (3-oxoacyl-[acyl-carrier-protein] synthase III [Fistulifera solaris])

HSP 1 Score: 380.6 bits (976), Expect = 6.400e-102
Identity = 207/341 (60.70%), Postives = 257/341 (75.37%), Query Frame = 0
Query:   76 AGRSFLRSKPIGVGSAAPADVIKNTDLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEGKDIDVVILATSSPDDLFGDATSVAAAVGA-TGAVAFDLTAACSGFLFGVVTASQFLHSGCY-RHALVVGADALSRWVDWEDRNSCILFGDGAGAVVL-TVAEGD-ADSGVLGFAMHSDGTGQGDLNLQF-AKDESQSPPEINAVTPYKGKYNNIAMNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVADRLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGAGLSWGSAIIRW 412
            A    +  +PIG+GSAAP   I N DLE VV+T+DEWI TRTGI+QR +L S  ++  LA  A   ALE AG++ +++D+VI ATSSPDD+FGDA ++A  +G  T  VAFDLTAACSGFLF  VTA +FL SG   + ALV+GADALSRWVDWEDRN CILFGDGAGA+VL +  +GD A SG+LG+A  S+G G  +LN  +  K  + + P    V      YN++ MNGKEVYKFATR+VP V+ EAL  AG+ V+ VD+LLLHQANIRIM+ VA RLG+  +K++TNL++YGNTSA SIPLALD AV+SGKVKKGD+IACAGFGAGLSWG+AI+RW
Sbjct:   38 ASSGLMHCRPIGIGSAAPDTTITNFDLEKVVDTTDEWIQTRTGIAQRHVLTSTEKLHDLAVIAGRNALEMAGVKPEELDLVICATSSPDDMFGDAPNIANKLGCPTSTVAFDLTAACSGFLFASVTAGKFLTSGDKPQRALVLGADALSRWVDWEDRNVCILFGDGAGAMVLESTPQGDSAASGLLGYAARSNGAGNVELNCSYLGKPRTVATPGEGTVIS-SASYNSLFMNGKEVYKFATREVPEVLSEALDAAGMTVDDVDFLLLHQANIRIMETVAKRLGIPMEKVITNLNEYGNTSAASIPLALDAAVRSGKVKKGDVIACAGFGAGLSWGAAILRW 377          
BLAST of NO28G00420 vs. NCBI_GenBank
Match: GAX13302.1 (3-oxoacyl-[acyl-carrier-protein] synthase III [Fistulifera solaris])

HSP 1 Score: 380.6 bits (976), Expect = 6.400e-102
Identity = 207/341 (60.70%), Postives = 257/341 (75.37%), Query Frame = 0
Query:   76 AGRSFLRSKPIGVGSAAPADVIKNTDLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEGKDIDVVILATSSPDDLFGDATSVAAAVGA-TGAVAFDLTAACSGFLFGVVTASQFLHSGCY-RHALVVGADALSRWVDWEDRNSCILFGDGAGAVVL-TVAEGD-ADSGVLGFAMHSDGTGQGDLNLQF-AKDESQSPPEINAVTPYKGKYNNIAMNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVADRLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGAGLSWGSAIIRW 412
            A    +  +PIG+GSAAP   I N DLE VV+T+DEWI TRTGI+QR +L S  ++  LA  A   ALE AG++ +++D+VI ATSSPDD+FGDA ++A  +G  T  VAFDLTAACSGFLF  VTA +FL SG   + ALV+GADALSRWVDWEDRN CILFGDGAGA+VL +  +GD A SG+LG+A  S+G G  +LN  +  K  + + P    V      YN++ MNGKEVYKFATR+VP V+ EAL  AG+ V+ VD+LLLHQANIRIM+ VA RLG+  +K++TNL++YGNTSA SIPLALD AV+SGKVKKGD+IACAGFGAGLSWG+AI+RW
Sbjct:   38 ASSGLMHCRPIGIGSAAPDTTITNFDLEKVVDTTDEWIQTRTGIAQRHVLTSTEKLHDLAVIAGRNALEMAGVKPEELDLVICATSSPDDMFGDAPNIANKLGCPTSTVAFDLTAACSGFLFASVTAGKFLTSGDKPQRALVLGADALSRWVDWEDRNVCILFGDGAGAMVLESTPQGDSAASGLLGYAARSNGAGNVELNCSYLGKPRTVATPGEGTVIS-SASYNSLFMNGKEVYKFATREVPEVLSEALDAAGMTVDDVDFLLLHQANIRIMETVAKRLGIPMEKVITNLNEYGNTSAASIPLALDAAVRSGKVKKGDVIACAGFGAGLSWGAAILRW 377          
BLAST of NO28G00420 vs. NCBI_GenBank
Match: XP_009032576.1 (hypothetical protein AURANDRAFT_18929 [Aureococcus anophagefferens] >EGB12960.1 hypothetical protein AURANDRAFT_18929 [Aureococcus anophagefferens])

HSP 1 Score: 379.8 bits (974), Expect = 1.100e-101
Identity = 199/338 (58.88%), Postives = 249/338 (73.67%), Query Frame = 0
Query:   76 AGRSFLRSKPIGVGSAAPADVIKNTDLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEGKDIDVVILATSSPDDLFGDATSVAAAVGATGAVAFDLTAACSGFLFGVVTASQFLHSGCYRHALVVGADALSRWVDWEDRNSCILFGDGAGAVVLTVAEGDADSGVLGFAMHSDGTGQGDLNLQFAKDESQSPPEINAVTPYKGKYNNIAMNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVADRLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGAGLSWGSAIIRWQG 414
            A RS L     G GSA P   + N DL + ++T+DEWI  RTGI  RR+L     +  L+A A  +ALE+AG++ +D+ +VILATSSPDDLFGDAT+VA A G   AVAFDLTAACSGFLF +VTA+QF+ SG Y   LVVG+DALSRWVDWEDR  CILFGDGAGAVV+  A   A SG+LG+AMHSDG G+ DL+ +  +  ++   E   V   +  Y  IAMNG +VY FAT++VP VI EAL +AGLGV+ VDWLLLHQAN+RIM+  A RLG+  DK+L +L + GNTSAGSIP+ALD+A+  GKV++GD++ACAGFGAGLSWG+AI +W G
Sbjct:   31 ATRSALGVAVSGSGSARPTARLSNDDLATFMDTTDEWISQRTGIRARRVLSPDESLAQLSADAGTKALESAGVDPEDVGLVILATSSPDDLFGDATAVAKACGCANAVAFDLTAACSGFLFSLVTAAQFVESGAYDKVLVVGSDALSRWVDWEDRGVCILFGDGAGAVVVEGAAEGAASGLLGWAMHSDGKGRCDLSCEGTR-SARPLAETGIVVAEESAYGPIAMNGNKVYVFATKRVPEVILEALDHAGLGVDDVDWLLLHQANVRIMEAAAKRLGIPMDKVLVSLDECGNTSAGSIPIALDDAIGQGKVQQGDVVACAGFGAGLSWGAAIFKWAG 367          
BLAST of NO28G00420 vs. NCBI_GenBank
Match: OEU19219.1 (3-oxoacyl-synthase III [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 376.7 bits (966), Expect = 9.200e-101
Identity = 204/358 (56.98%), Postives = 267/358 (74.58%), Query Frame = 0
Query:   67 EGSGTGKSVAGRSFLRSKPIGVGSAAPADVIKNTDLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEGKDIDVVILATSSPDDLFGDATSVAAAVG-ATGAVAFDLTAACSGFLFGVVTASQFLH--SGCYRHALVVGADALSRWVDWEDRNSCILFGDGAGAVVLTVAEGDADS-------GVLGFAMHSDGTGQGDLNLQFAKDESQSPPEINAVTPY---KGKYNNIAMNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVADRLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGAGLSWGSAIIRW 412
            +GS +  S++  + L  +PIG+G A+P  ++ N+DLESVVET+DEWI  RTGISQRR+L +G ++R L  +AA  A+E AG+  ++IDVVI ATSSP+D+FGDAT++AA +G +T  +AFDLTAACSGFLF  VTA Q+L   +   ++ALV+GADALSR VDW+DRN+CILFGDGAGA+VLT  +   D        G+LG+A HS+G G  DLN  +    + +P  ++   P       Y+++AMNG+ VYKFATR+VP V+ EAL  A +  + +DWLLLHQANIRIM  VA RL + ++KI+TNL+DYGNTSAGSIP+AL EAV+SG+VKKGDIIA AGFGAGLSWGSAI+RW
Sbjct:   43 QGSTSQLSISSGA-LPCRPIGIGHASPKTIVTNSDLESVVETNDEWIAQRTGISQRRVLTAGEKLRDLGISAAKNAIEMAGITAEEIDVVICATSSPEDMFGDATAIAAEIGCSTETMAFDLTAACSGFLFATVTAGQYLSTPNTKLKNALVLGADALSRVVDWDDRNACILFGDGAGAMVLTNQKDSDDDENDNIVPGILGYAAHSNGHGYADLNCVY----NGTPRPVSTPVPITLESSGYDSMAMNGQNVYKFATREVPRVVSEALEEANMTPDDIDWLLLHQANIRIMQTVAKRLKIPEEKIITNLADYGNTSAGSIPIALSEAVRSGQVKKGDIIATAGFGAGLSWGSAIMRW 395          
BLAST of NO28G00420 vs. NCBI_GenBank
Match: PSC74644.1 (3-oxoacyl-ACP synthase [Micractinium conductrix])

HSP 1 Score: 375.9 bits (964), Expect = 1.600e-100
Identity = 190/328 (57.93%), Postives = 245/328 (74.70%), Query Frame = 0
Query:   84 KPIGVGSAAPADVIKNTDLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEGKDIDVVILATSSPDDLFGDATSVAAAVGATGAVAFDLTAACSGFLFGVVTASQFLHSGCYRHALVVGADALSRWVDWEDRNSCILFGDGAGAVVLTVAEGDADSGVLGFAMHSDGTGQGDLNLQFAKDESQSPPEINAVTPYKGKYNNIAMNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVADRLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGAGLSWGSAIIRW 412
            K  GVGS+ P   + N DL  +V+TSDEWI +RTGI +R IL  G  +   AA A+ RALE AG+  +++++VI+ATSSPDDLFG AT+V AA+GATGA AFDLTAACSGF+ G+VT +Q++ +G Y+  LV+GADALSR++DW DR +CILFGDG GAVVL   EG    G+LG  MHSDG G   LN  FA +  +  P  +     +G YNN+ MNG+EV+KFA R VPTVIE ALA+AG+  +Q+DWL++HQAN+RIM   ADRLG+  +++++NLS YGNTSA SIPLALDEAV+ G +K G+++A AGFGAGLSW SAI+RW
Sbjct:  177 KLAGVGSSVPEKFLTNDDLAQLVDTSDEWIISRTGIKKRHILSEGESLGSHAAAASRRALEMAGVAAEEVELVIMATSSPDDLFGSATTVQAAIGATGAAAFDLTAACSGFVMGLVTGAQYIKAGTYKTVLVIGADALSRYIDWRDRGTCILFGDGCGAVVLRAQEGSC--GLLGIDMHSDGNGMRHLNCAFAGEPMK--PLSSGDASKQGAYNNLHMNGQEVFKFAVRAVPTVIEAALADAGMEKQQIDWLVMHQANMRIMSSAADRLGVPPERVVSNLSQYGNTSAASIPLALDEAVRRGDIKPGEVLAMAGFGAGLSWASAIVRW 500          
The following BLAST results are available for this feature:
BLAST of NO28G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN77814.11.900e-12266.08beta-ketoacyl synthase [Ectocarpus siliculosus][more]
KOO24051.18.000e-11363.163-oxoacyl-(acyl-carrier-protein) synthase iii (bet... [more]
XP_002295320.12.300e-10761.313-oxoacyl-synthase [Thalassiosira pseudonana CCMP1... [more]
XP_005794573.11.200e-10561.72hypothetical protein EMIHUDRAFT_447603 [Emiliania ... [more]
AQS99299.13.700e-10256.603-ketoacyl acyl carrier protein synthase III [Gamb... [more]
GAX27375.16.400e-10260.703-oxoacyl-[acyl-carrier-protein] synthase III [Fis... [more]
GAX13302.16.400e-10260.703-oxoacyl-[acyl-carrier-protein] synthase III [Fis... [more]
XP_009032576.11.100e-10158.88hypothetical protein AURANDRAFT_18929 [Aureococcus... [more]
OEU19219.19.200e-10156.983-oxoacyl-synthase III [Fragilariopsis cylindrus C... [more]
PSC74644.11.600e-10057.933-oxoacyl-ACP synthase [Micractinium conductrix][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00420.1NO28G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606651gene_9143Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00420.1NO28G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00420 ID=NO28G00420|Name=NO28G00420|organism=Nannochloropsis oceanica|type=gene|length=2451bp
ATGCCTTCACGgtacgttcgtcacggggtattttttcccccattaccacc
accaccctccatctccatccctaaccctctcccttccttctccctccttc
acttcccttgtcccaataatagCACACCAACAGCTTTCTCCTTCGTCTTC
CTACCCTCTCTCGTCCTCTCGTTCGTCTTCCTACAATGTTGCACACTTTT
TCCCTCGACCGCCGCCTTCCTCCTTCCTTCCTCCTCCCTCCCTTCCACCT
CCTCTGACTACTATTCCTCATCCTCCTTGCGACGACGTGTCGCCCTCCAA
ATGCAAGGAGAAGGCTCTGGCACCGGCAAATCCGTGGCAGGTCGTTCTTT
TCTGAGGTCCAAGCCTATTGGTGTGGGCAGTGCGGCCCCTGCTGACGTGA
TAAAGAACACGGACCTTGAGAGCGTGGTGGAGACTTCGGATGAATGGATT
TTCACCCGGACAGgtacaatgggagagaggggaaggcgagaaggggatgg
gagggagggataaatgaagggaaggatgaagattacatgcgtggttatct
tgcggacggtccaagacgtgcgtgtgtccttcctcactcacggctcgcaa
tctcccctccatatacatcacgtctttcctccctcctcattctttccccc
cttcccagGTATCTCTCAACGCCGCATCCTTCCCTCGGGCGGGCAAATTC
GGGGCTTGGCCGCCACGGCCGCTGCCCGTGCTCTAGAAAACGCAGGGCTG
GAAGGAAAGGACATTGATGTGGTGATTCTCGCCACGTCTTCCCCGGACGA
TCTCTTCGGGGATGCCACGAGCGTGGCGGCGGCCGTTGGTGCAACGGGCG
CCGTGGCGTTTGATTTAACGGCCGCCTGCTCGGGCTTTCTCTTCGGCGTG
GTAACGGCGTCGCAGTTCCTCCACTCGGGGTGCTACCGCCACGCACTGGT
GGTGGGCGCTGACGCCTTGTCCAGATGGGTTGACTGGGAGGATCGGAACT
CGTGTATTCTGTTCGGAGATGGCGCGGGCGCGGTGGTGCTGACGGTGGCA
GAAGGAGATGCCGATTCGGGTGTCTTGGGCTTTGCCATGCACAGCGATGG
GACAGgtgagagggggagagagggaaggagggagggagggagggagggag
gggcggatgtagcagccttcacttcgtctttctttgaaggtctctctcct
catcgagcctatatcattcagacacccataccaccattccagcaaatcaa
gtgattctcaattttcccttccttcctccctccctccctctcttcccacc
tacctagGTCAAGGCGACTTGAACCTCCAGTTCGCGAAGGACGAGTCTCA
GAGCCCCCCCGAGATCAATGCCGTCACGCCCTACAAGGGAAAGTACAACA
ACATTGCCATGAACGGAAAGGAGGTGTACAAATTTGCCACGCGCAAGgta
cgtatgtcccttcccttcctccctccctccctccctccctccctccttcc
tgccctccttccttccctttccatcttctccctgatgtccgcctcgcgcc
atcaatttctgaaatcagtcctccctctcctccccctatcttccctccct
ctcttccctccctctctccctttgtagGTGCCCACCGTCATCGAAGAGGC
CTTGGCTAACGCGGGGCTGGGGGTAGAGCAGGTTGATTGGTTGTTGCTGC
ATCAGGCCAACATTCGCATCATGGACGTAGTGGCCGACCGGCTAGgtatg
tgaaaccctcccctcccgcccgccctcccttaggagatatgatgggtatt
ggtttttttgaaatatgatgtgatgggtgtaatacaaatatattggaatt
atgatgtgatgggtgtaatacaaatatataagaatggcgatgtgatgggt
aaagtacaaatatattggaattatgatgtgataggtgttggtatattcga
cgggctgcgggggatgaaagctctaggagaggccatgatgactgaaacca
catattcacccccccttccctccttccctccctccctccctccctccctc
cctccctccctccctccctccagGTCTGTCGAAGGACAAGATCCTGACTA
ACCTCTCCGACTATGGCAATACCTCCGCTGGCTCAATTCCCCTTGCTCTC
GACGAGGCCGTCAAGgtacgccctccctccccccctccctccatccctcc
ctcccttccctcctccattcactggcacaacgtctgccctccaatcacgt
cgttctgacgccaatatcgccccccctctaaaatattgaacgacaaaaaa
aaaacatccctccctccctccctccctccctccctccctccctccctccc
tccctcagTCCGGGAAGGTCAAGAAAGGCGACATCATTGCGTGCGCTGGA
TTCGGAGCCGGTCTATCGTGGGGCAGCGCTATTATTAGATGGCAGGGCTA
G
back to top

protein sequence of NO28G00420.1

>NO28G00420.1-protein ID=NO28G00420.1-protein|Name=NO28G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MPSRTPTAFSFVFLPSLVLSFVFLQCCTLFPSTAAFLLPSSSLPSTSSDY
YSSSSLRRRVALQMQGEGSGTGKSVAGRSFLRSKPIGVGSAAPADVIKNT
DLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEG
KDIDVVILATSSPDDLFGDATSVAAAVGATGAVAFDLTAACSGFLFGVVT
ASQFLHSGCYRHALVVGADALSRWVDWEDRNSCILFGDGAGAVVLTVAEG
DADSGVLGFAMHSDGTGQGDLNLQFAKDESQSPPEINAVTPYKGKYNNIA
MNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVAD
RLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGA
GLSWGSAIIRWQG*
back to top
Synonyms
Publications