NO28G00420.1, NO28G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00420.1
Unique NameNO28G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1242
Alignment locationchr28:161296..163746 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:161296..163746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00420.1 vs.
Match: CBN77814.1 (beta-ketoacyl synthase [Ectocarpus siliculosus])

HSP 1 Score: 448.7 bits (1153), Expect = 1.900e-122
Identity = 226/342 (66.08%), Postives = 278/342 (81.29%), Query Frame = 0 
Query:   72 GKSVAGRSFLRSKPIGVGSAAPADVIKNTDLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEGKDIDVVILATSSPDDLFGDATSVAAAVGATGAVAFDLTAACSGFLFGVVTASQFLHSGCYRHALVVGADALSRWVDWEDRNSCILFGDGAGAVVLTVAEGDADSGVLGFAMHSDGTGQGDLNLQFAKDESQSPPEINAVTPYKGKYNNIAMNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVADRLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGAGLSWGSAIIRWQG 414
            G+ V G+S LRS+ +G+GS+AP  V+ N DLE +VETSDEWI TRTGI +R +L  G  +  LA +A+ +AL+ AG++G DID+V++ATSSPDD+FGDA  VA +VGA  AVAFDLTAACSGFLF +VTASQF+HSG Y+  LV+GADALSRWVDW+DRNSCILFGDGAGA+VL  AEGD  +G+LGF++HSDG G   L L +  +E +   +  AVT  KG+Y ++ M G+EVYKFATR+VP V+ EAL NAG+GVE VDWLLLHQANIRIM+ VA RLGL  DK++TNL++YGNTSAGSIPLALDEAV+SGKVK GD+IACAGFGAGLSWG+A+IRW G
Sbjct:   64 GEPVPGKSMLRSRAVGIGSSAPDTVLPNADLEELVETSDEWIATRTGIRKRHLLKEGEGVTDLAISASNKALKLAGVDGADIDLVVMATSSPDDMFGDACVVANSVGAKSAVAFDLTAACSGFLFALVTASQFIHSGTYKKCLVIGADALSRWVDWDDRNSCILFGDGAGAMVLEAAEGDDTAGLLGFSLHSDGGGHKSLTLGYDGEERKLGDKY-AVT--KGRYGSLGMEGREVYKFATREVPRVLTEALDNAGMGVEDVDWLLLHQANIRIMETVASRLGLPMDKVITNLAEYGNTSAGSIPLALDEAVRSGKVKSGDVIACAGFGAGLSWGAAVIRWSG 402
The following BLAST results are available for this feature:
BLAST of NO28G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN77814.11.900e-12266.08beta-ketoacyl synthase [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00420NO28G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00420.1NO28G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00420.1.cds1NO28G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00420.1.cds2NO28G00420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00420.1.cds3NO28G00420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00420.1.cds4NO28G00420.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00420.1.cds5NO28G00420.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00420.1.cds6NO28G00420.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00420.1.cds7NO28G00420.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00420.1 ID=NO28G00420.1|Name=NO28G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
ATGCCTTCACGCACACCAACAGCTTTCTCCTTCGTCTTCCTACCCTCTCT
CGTCCTCTCGTTCGTCTTCCTACAATGTTGCACACTTTTTCCCTCGACCG
CCGCCTTCCTCCTTCCTTCCTCCTCCCTCCCTTCCACCTCCTCTGACTAC
TATTCCTCATCCTCCTTGCGACGACGTGTCGCCCTCCAAATGCAAGGAGA
AGGCTCTGGCACCGGCAAATCCGTGGCAGGTCGTTCTTTTCTGAGGTCCA
AGCCTATTGGTGTGGGCAGTGCGGCCCCTGCTGACGTGATAAAGAACACG
GACCTTGAGAGCGTGGTGGAGACTTCGGATGAATGGATTTTCACCCGGAC
AGGTATCTCTCAACGCCGCATCCTTCCCTCGGGCGGGCAAATTCGGGGCT
TGGCCGCCACGGCCGCTGCCCGTGCTCTAGAAAACGCAGGGCTGGAAGGA
AAGGACATTGATGTGGTGATTCTCGCCACGTCTTCCCCGGACGATCTCTT
CGGGGATGCCACGAGCGTGGCGGCGGCCGTTGGTGCAACGGGCGCCGTGG
CGTTTGATTTAACGGCCGCCTGCTCGGGCTTTCTCTTCGGCGTGGTAACG
GCGTCGCAGTTCCTCCACTCGGGGTGCTACCGCCACGCACTGGTGGTGGG
CGCTGACGCCTTGTCCAGATGGGTTGACTGGGAGGATCGGAACTCGTGTA
TTCTGTTCGGAGATGGCGCGGGCGCGGTGGTGCTGACGGTGGCAGAAGGA
GATGCCGATTCGGGTGTCTTGGGCTTTGCCATGCACAGCGATGGGACAGG
TCAAGGCGACTTGAACCTCCAGTTCGCGAAGGACGAGTCTCAGAGCCCCC
CCGAGATCAATGCCGTCACGCCCTACAAGGGAAAGTACAACAACATTGCC
ATGAACGGAAAGGAGGTGTACAAATTTGCCACGCGCAAGGTGCCCACCGT
CATCGAAGAGGCCTTGGCTAACGCGGGGCTGGGGGTAGAGCAGGTTGATT
GGTTGTTGCTGCATCAGGCCAACATTCGCATCATGGACGTAGTGGCCGAC
CGGCTAGGTCTGTCGAAGGACAAGATCCTGACTAACCTCTCCGACTATGG
CAATACCTCCGCTGGCTCAATTCCCCTTGCTCTCGACGAGGCCGTCAAGT
CCGGGAAGGTCAAGAAAGGCGACATCATTGCGTGCGCTGGATTCGGAGCC
GGTCTATCGTGGGGCAGCGCTATTATTAGATGGCAGGGCTAG
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protein sequence of NO28G00420.1

>NO28G00420.1-protein ID=NO28G00420.1-protein|Name=NO28G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MPSRTPTAFSFVFLPSLVLSFVFLQCCTLFPSTAAFLLPSSSLPSTSSDY
YSSSSLRRRVALQMQGEGSGTGKSVAGRSFLRSKPIGVGSAAPADVIKNT
DLESVVETSDEWIFTRTGISQRRILPSGGQIRGLAATAAARALENAGLEG
KDIDVVILATSSPDDLFGDATSVAAAVGATGAVAFDLTAACSGFLFGVVT
ASQFLHSGCYRHALVVGADALSRWVDWEDRNSCILFGDGAGAVVLTVAEG
DADSGVLGFAMHSDGTGQGDLNLQFAKDESQSPPEINAVTPYKGKYNNIA
MNGKEVYKFATRKVPTVIEEALANAGLGVEQVDWLLLHQANIRIMDVVAD
RLGLSKDKILTNLSDYGNTSAGSIPLALDEAVKSGKVKKGDIIACAGFGA
GLSWGSAIIRWQG*
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mRNA from alignment at chr28:161296..163746+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00420.1 ID=NO28G00420.1|Name=NO28G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2451bp|location=Sequence derived from alignment at chr28:161296..163746+ (Nannochloropsis oceanica)
ATGCCTTCACGGTACGTTCGTCACGGGGTATTTTTTCCCCCATTACCACC
ACCACCCTCCATCTCCATCCCTAACCCTCTCCCTTCCTTCTCCCTCCTTC
ACTTCCCTTGTCCCAATAATAGCACACCAACAGCTTTCTCCTTCGTCTTC
CTACCCTCTCTCGTCCTCTCGTTCGTCTTCCTACAATGTTGCACACTTTT
TCCCTCGACCGCCGCCTTCCTCCTTCCTTCCTCCTCCCTCCCTTCCACCT
CCTCTGACTACTATTCCTCATCCTCCTTGCGACGACGTGTCGCCCTCCAA
ATGCAAGGAGAAGGCTCTGGCACCGGCAAATCCGTGGCAGGTCGTTCTTT
TCTGAGGTCCAAGCCTATTGGTGTGGGCAGTGCGGCCCCTGCTGACGTGA
TAAAGAACACGGACCTTGAGAGCGTGGTGGAGACTTCGGATGAATGGATT
TTCACCCGGACAGGTACAATGGGAGAGAGGGGAAGGCGAGAAGGGGATGG
GAGGGAGGGATAAATGAAGGGAAGGATGAAGATTACATGCGTGGTTATCT
TGCGGACGGTCCAAGACGTGCGTGTGTCCTTCCTCACTCACGGCTCGCAA
TCTCCCCTCCATATACATCACGTCTTTCCTCCCTCCTCATTCTTTCCCCC
CTTCCCAGGTATCTCTCAACGCCGCATCCTTCCCTCGGGCGGGCAAATTC
GGGGCTTGGCCGCCACGGCCGCTGCCCGTGCTCTAGAAAACGCAGGGCTG
GAAGGAAAGGACATTGATGTGGTGATTCTCGCCACGTCTTCCCCGGACGA
TCTCTTCGGGGATGCCACGAGCGTGGCGGCGGCCGTTGGTGCAACGGGCG
CCGTGGCGTTTGATTTAACGGCCGCCTGCTCGGGCTTTCTCTTCGGCGTG
GTAACGGCGTCGCAGTTCCTCCACTCGGGGTGCTACCGCCACGCACTGGT
GGTGGGCGCTGACGCCTTGTCCAGATGGGTTGACTGGGAGGATCGGAACT
CGTGTATTCTGTTCGGAGATGGCGCGGGCGCGGTGGTGCTGACGGTGGCA
GAAGGAGATGCCGATTCGGGTGTCTTGGGCTTTGCCATGCACAGCGATGG
GACAGGTGAGAGGGGGAGAGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAG
GGGCGGATGTAGCAGCCTTCACTTCGTCTTTCTTTGAAGGTCTCTCTCCT
CATCGAGCCTATATCATTCAGACACCCATACCACCATTCCAGCAAATCAA
GTGATTCTCAATTTTCCCTTCCTTCCTCCCTCCCTCCCTCTCTTCCCACC
TACCTAGGTCAAGGCGACTTGAACCTCCAGTTCGCGAAGGACGAGTCTCA
GAGCCCCCCCGAGATCAATGCCGTCACGCCCTACAAGGGAAAGTACAACA
ACATTGCCATGAACGGAAAGGAGGTGTACAAATTTGCCACGCGCAAGGTA
CGTATGTCCCTTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCC
TGCCCTCCTTCCTTCCCTTTCCATCTTCTCCCTGATGTCCGCCTCGCGCC
ATCAATTTCTGAAATCAGTCCTCCCTCTCCTCCCCCTATCTTCCCTCCCT
CTCTTCCCTCCCTCTCTCCCTTTGTAGGTGCCCACCGTCATCGAAGAGGC
CTTGGCTAACGCGGGGCTGGGGGTAGAGCAGGTTGATTGGTTGTTGCTGC
ATCAGGCCAACATTCGCATCATGGACGTAGTGGCCGACCGGCTAGGTATG
TGAAACCCTCCCCTCCCGCCCGCCCTCCCTTAGGAGATATGATGGGTATT
GGTTTTTTTGAAATATGATGTGATGGGTGTAATACAAATATATTGGAATT
ATGATGTGATGGGTGTAATACAAATATATAAGAATGGCGATGTGATGGGT
AAAGTACAAATATATTGGAATTATGATGTGATAGGTGTTGGTATATTCGA
CGGGCTGCGGGGGATGAAAGCTCTAGGAGAGGCCATGATGACTGAAACCA
CATATTCACCCCCCCTTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCAGGTCTGTCGAAGGACAAGATCCTGACTA
ACCTCTCCGACTATGGCAATACCTCCGCTGGCTCAATTCCCCTTGCTCTC
GACGAGGCCGTCAAGGTACGCCCTCCCTCCCCCCCTCCCTCCATCCCTCC
CTCCCTTCCCTCCTCCATTCACTGGCACAACGTCTGCCCTCCAATCACGT
CGTTCTGACGCCAATATCGCCCCCCCTCTAAAATATTGAACGACAAAAAA
AAAACATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCAGTCCGGGAAGGTCAAGAAAGGCGACATCATTGCGTGCGCTGGA
TTCGGAGCCGGTCTATCGTGGGGCAGCGCTATTATTAGATGGCAGGGCTA
G
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Coding sequence (CDS) from alignment at chr28:161296..163746+

>NO28G00420.1 ID=NO28G00420.1|Name=NO28G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr28:161296..163746+ (Nannochloropsis oceanica)
ATGCCTTCACGCACACCAACAGCTTTCTCCTTCGTCTTCCTACCCTCTCT
CGTCCTCTCGTTCGTCTTCCTACAATGTTGCACACTTTTTCCCTCGACCG
CCGCCTTCCTCCTTCCTTCCTCCTCCCTCCCTTCCACCTCCTCTGACTAC
TATTCCTCATCCTCCTTGCGACGACGTGTCGCCCTCCAAATGCAAGGAGA
AGGCTCTGGCACCGGCAAATCCGTGGCAGGTCGTTCTTTTCTGAGGTCCA
AGCCTATTGGTGTGGGCAGTGCGGCCCCTGCTGACGTGATAAAGAACACG
GACCTTGAGAGCGTGGTGGAGACTTCGGATGAATGGATTTTCACCCGGAC
AGGTATCTCTCAACGCCGCATCCTTCCCTCGGGCGGGCAAATTCGGGGCT
TGGCCGCCACGGCCGCTGCCCGTGCTCTAGAAAACGCAGGGCTGGAAGGA
AAGGACATTGATGTGGTGATTCTCGCCACGTCTTCCCCGGACGATCTCTT
CGGGGATGCCACGAGCGTGGCGGCGGCCGTTGGTGCAACGGGCGCCGTGG
CGTTTGATTTAACGGCCGCCTGCTCGGGCTTTCTCTTCGGCGTGGTAACG
GCGTCGCAGTTCCTCCACTCGGGGTGCTACCGCCACGCACTGGTGGTGGG
CGCTGACGCCTTGTCCAGATGGGTTGACTGGGAGGATCGGAACTCGTGTA
TTCTGTTCGGAGATGGCGCGGGCGCGGTGGTGCTGACGGTGGCAGAAGGA
GATGCCGATTCGGGTGTCTTGGGCTTTGCCATGCACAGCGATGGGACAGG
TCAAGGCGACTTGAACCTCCAGTTCGCGAAGGACGAGTCTCAGAGCCCCC
CCGAGATCAATGCCGTCACGCCCTACAAGGGAAAGTACAACAACATTGCC
ATGAACGGAAAGGAGGTGTACAAATTTGCCACGCGCAAGGTGCCCACCGT
CATCGAAGAGGCCTTGGCTAACGCGGGGCTGGGGGTAGAGCAGGTTGATT
GGTTGTTGCTGCATCAGGCCAACATTCGCATCATGGACGTAGTGGCCGAC
CGGCTAGGTCTGTCGAAGGACAAGATCCTGACTAACCTCTCCGACTATGG
CAATACCTCCGCTGGCTCAATTCCCCTTGCTCTCGACGAGGCCGTCAAGT
CCGGGAAGGTCAAGAAAGGCGACATCATTGCGTGCGCTGGATTCGGAGCC
GGTCTATCGTGGGGCAGCGCTATTATTAGATGGCAGGGCTAG
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Synonyms
Publications