NO27G01340, NO27G01340 (gene) Nannochloropsis oceanica

Overview
NameNO27G01340
Unique NameNO27G01340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2269
Alignment locationchr27:431818..434086 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:431818..434086 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016181Acyl_CoA_acyltransferase
Homology
The following BLAST results are available for this feature:
BLAST of NO27G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01340.1NO27G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01340.1NO27G01340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01340 ID=NO27G01340|Name=NO27G01340|organism=Nannochloropsis oceanica|type=gene|length=2269bp
ATGCTGCTTCCAAGAAGGAGGAGAAGAAGAAGAATCTCAGGGTCGGCGTC
CTCCCCGCTCCTCGACCTTCCCATCTCCCTCCTCCTCGCCCTCATCCTCA
CCCCAGGGGCCGTTTCCTTCCTCCTCGCCCCTACGCCTAACCCTTCTCCT
TCCTCCACCTCCGCATCACACTTGAGCCATGCTGCTACTTTAGGACATAA
AAGATTAGGAGTAGATGGAGGGAGGAGAGGCAGCGACGATGTACAGTGGG
CGCGGCAGCCCCGAGGGCTATCCCAACGgttggtgtggctgctagtgagg
ggatgggccatgtgggtgtgggttatgcgcgtgtagtggtgtgtatgctt
ggtacttttatgtgtgtgtttcgatgcatgtagacaaataataacgccat
taagaggacttgccaattcctccattggtccctcccttcccctatccttc
cctctcttcattccgacgtctacagACATGCAGCATCCCCCACGGCCGCT
GGCACAGCCACTCTGGTGCGACCCACTGAGGAGGAGGGAGAGAGGGAGAA
GGATCACGGGAAGGTTGGAGGAGGAAAGGGAAGACAGGCCGTTGCTGCGA
AGGGCAGTCCAGTCGTTCTGGAGATTCGGGAGgtatgtggattatatccc
cctctctcacgacacagacgtctaccactccctctctcacgacacaaccg
cgcctccttcccttgtgcttctgtcccttacgccccctcattatttctgt
ctctcgtaatctaaaactcaccccttctcttccactcacccttcctccct
ccctccttccctccctccccagGCGACCATGGCAGACACGCGGGCCCTCG
TGGAGTTTGTGCTCAAGTGCGAAGGGGAGTGGCTCGGCGCCGGGCACGTC
AAAAAgtacgagtctcattccccccccctcccctcccctcccttcctccc
tttctccgttcctcccttcctcctccctcgttcggtcagtcaagccgcct
tggtctcgtcctgactcctttcctctctccctccctcccttcctccccgt
ccctccagAGAGGGACTAAACGCCCGTCTCCAATTCCACCTCTCCAACGG
CGTCCTCGTGTACATGGCCTTCGATGCGGCCTCGCCTGAGATGCTTGTTG
gtaaggcctccatcccatccctcccttccccctcccctccctcctttcac
ccccttccttcctccctccctccctttctccctagccatgtaatgttttt
agacccagcacgcctcttgacgctgcttgccctcctccctccctcccccc
ctctatcagGGATCTACGCCTCTACGGCCATCGACCACATGACCATCCCC
CGCCTCCCCCTCGACCCGTCGGCCCCTCCTTCCCCCCCGCCCTCCTCCCG
CAGGTCAGAAGAAAATGAGGAGGAGGAGGAGCAAGGCGAGGACGAGGGCG
GGAGGGAGGGAGGGCATTTCTTCCCTTCTGTGAGCCAGACCTGCCCCAGG
CGGTTCCTGAGCGATGTCAAGgtagggaaggaggaagggaaggaggggga
ggggaagggaaagggatgaagattgaaatgaagctgagtcacataccaaa
ttttctaaccaaggaggttgcgtgtaagggagggcgaaagtggtggagag
aaggaagggagagagggaggctagtccgtgttgtggctttaattaagact
gacttatctcccatccgtactttttgcggtttccccctcgtcttctcacg
gcctcgtccagGTGATCGATAGCTACAAGCGCAGGGGCGTGGCCACCTCG
ATGCTGCTACACTTCCAAGCCACAGAGCAAGCCCTGGACGTGGGCCACGA
GGGCGgtgcgtgccctccccctctccctccctcctattccctcttccctc
ctgcacgctttttactcgtctctcctgaatgaagcaccgtctctcgtatc
tcacccaaactacacgcatgaaagtcaccttttctgtccccctccctcac
acactccctccctcacacactccctctcagTCCTCGCCTGCCTGTTCGTC
ACCAAGGATAACCCCGCCGGACTACGCTTGTACGAGAAAGCAGGCTACCT
GCCCGTCCAAGGCGATCTGAAACGGAAACGATTTCGTCCTTTGTTGGAAG
CGGGAGCTATTCACGAAGACGACTTGAAGGGGGTCGTCTTTATGTGCAAA
TACATCAAGCCGCTTTTGCGAAGATCGGGAGGAGGGAGGGAAGAAAGGAG
ACAGGGGGAGGGGAAGTAA
back to top

protein sequence of NO27G01340.1

>NO27G01340.1-protein ID=NO27G01340.1-protein|Name=NO27G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MLLPRRRRRRRISGSASSPLLDLPISLLLALILTPGAVSFLLAPTPNPSP
SSTSASHLSHAATLGHKRLGVDGGRRGSDDVQWARQPRGLSQRHAASPTA
AGTATLVRPTEEEGEREKDHGKVGGGKGRQAVAAKGSPVVLEIREATMAD
TRALVEFVLKCEGEWLGAGHVKKEGLNARLQFHLSNGVLVYMAFDAASPE
MLVGIYASTAIDHMTIPRLPLDPSAPPSPPPSSRRSEENEEEEEQGEDEG
GREGGHFFPSVSQTCPRRFLSDVKVIDSYKRRGVATSMLLHFQATEQALD
VGHEGVLACLFVTKDNPAGLRLYEKAGYLPVQGDLKRKRFRPLLEAGAIH
EDDLKGVVFMCKYIKPLLRRSGGGREERRQGEGK*
back to top
Synonyms
Publications