NO27G01340.1, NO27G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01340.1
Unique NameNO27G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1155
Alignment locationchr27:431818..434086 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:431818..434086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01340NO27G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01340.1NO27G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01340.1.cds1NO27G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01340.1.cds2NO27G01340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01340.1.cds3NO27G01340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01340.1.cds4NO27G01340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01340.1.cds5NO27G01340.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01340.1.cds6NO27G01340.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01340.1.cds7NO27G01340.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01340.1 ID=NO27G01340.1|Name=NO27G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp
ATGCTGCTTCCAAGAAGGAGGAGAAGAAGAAGAATCTCAGGGTCGGCGTC
CTCCCCGCTCCTCGACCTTCCCATCTCCCTCCTCCTCGCCCTCATCCTCA
CCCCAGGGGCCGTTTCCTTCCTCCTCGCCCCTACGCCTAACCCTTCTCCT
TCCTCCACCTCCGCATCACACTTGAGCCATGCTGCTACTTTAGGACATAA
AAGATTAGGAGTAGATGGAGGGAGGAGAGGCAGCGACGATGTACAGTGGG
CGCGGCAGCCCCGAGGGCTATCCCAACGACATGCAGCATCCCCCACGGCC
GCTGGCACAGCCACTCTGGTGCGACCCACTGAGGAGGAGGGAGAGAGGGA
GAAGGATCACGGGAAGGTTGGAGGAGGAAAGGGAAGACAGGCCGTTGCTG
CGAAGGGCAGTCCAGTCGTTCTGGAGATTCGGGAGGCGACCATGGCAGAC
ACGCGGGCCCTCGTGGAGTTTGTGCTCAAGTGCGAAGGGGAGTGGCTCGG
CGCCGGGCACGTCAAAAAAGAGGGACTAAACGCCCGTCTCCAATTCCACC
TCTCCAACGGCGTCCTCGTGTACATGGCCTTCGATGCGGCCTCGCCTGAG
ATGCTTGTTGGGATCTACGCCTCTACGGCCATCGACCACATGACCATCCC
CCGCCTCCCCCTCGACCCGTCGGCCCCTCCTTCCCCCCCGCCCTCCTCCC
GCAGGTCAGAAGAAAATGAGGAGGAGGAGGAGCAAGGCGAGGACGAGGGC
GGGAGGGAGGGAGGGCATTTCTTCCCTTCTGTGAGCCAGACCTGCCCCAG
GCGGTTCCTGAGCGATGTCAAGGTGATCGATAGCTACAAGCGCAGGGGCG
TGGCCACCTCGATGCTGCTACACTTCCAAGCCACAGAGCAAGCCCTGGAC
GTGGGCCACGAGGGCGTCCTCGCCTGCCTGTTCGTCACCAAGGATAACCC
CGCCGGACTACGCTTGTACGAGAAAGCAGGCTACCTGCCCGTCCAAGGCG
ATCTGAAACGGAAACGATTTCGTCCTTTGTTGGAAGCGGGAGCTATTCAC
GAAGACGACTTGAAGGGGGTCGTCTTTATGTGCAAATACATCAAGCCGCT
TTTGCGAAGATCGGGAGGAGGGAGGGAAGAAAGGAGACAGGGGGAGGGGA
AGTAA
back to top

protein sequence of NO27G01340.1

>NO27G01340.1-protein ID=NO27G01340.1-protein|Name=NO27G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MLLPRRRRRRRISGSASSPLLDLPISLLLALILTPGAVSFLLAPTPNPSP
SSTSASHLSHAATLGHKRLGVDGGRRGSDDVQWARQPRGLSQRHAASPTA
AGTATLVRPTEEEGEREKDHGKVGGGKGRQAVAAKGSPVVLEIREATMAD
TRALVEFVLKCEGEWLGAGHVKKEGLNARLQFHLSNGVLVYMAFDAASPE
MLVGIYASTAIDHMTIPRLPLDPSAPPSPPPSSRRSEENEEEEEQGEDEG
GREGGHFFPSVSQTCPRRFLSDVKVIDSYKRRGVATSMLLHFQATEQALD
VGHEGVLACLFVTKDNPAGLRLYEKAGYLPVQGDLKRKRFRPLLEAGAIH
EDDLKGVVFMCKYIKPLLRRSGGGREERRQGEGK*
back to top

mRNA from alignment at chr27:431818..434086+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01340.1 ID=NO27G01340.1|Name=NO27G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2269bp|location=Sequence derived from alignment at chr27:431818..434086+ (Nannochloropsis oceanica)
ATGCTGCTTCCAAGAAGGAGGAGAAGAAGAAGAATCTCAGGGTCGGCGTC
CTCCCCGCTCCTCGACCTTCCCATCTCCCTCCTCCTCGCCCTCATCCTCA
CCCCAGGGGCCGTTTCCTTCCTCCTCGCCCCTACGCCTAACCCTTCTCCT
TCCTCCACCTCCGCATCACACTTGAGCCATGCTGCTACTTTAGGACATAA
AAGATTAGGAGTAGATGGAGGGAGGAGAGGCAGCGACGATGTACAGTGGG
CGCGGCAGCCCCGAGGGCTATCCCAACGGTTGGTGTGGCTGCTAGTGAGG
GGATGGGCCATGTGGGTGTGGGTTATGCGCGTGTAGTGGTGTGTATGCTT
GGTACTTTTATGTGTGTGTTTCGATGCATGTAGACAAATAATAACGCCAT
TAAGAGGACTTGCCAATTCCTCCATTGGTCCCTCCCTTCCCCTATCCTTC
CCTCTCTTCATTCCGACGTCTACAGACATGCAGCATCCCCCACGGCCGCT
GGCACAGCCACTCTGGTGCGACCCACTGAGGAGGAGGGAGAGAGGGAGAA
GGATCACGGGAAGGTTGGAGGAGGAAAGGGAAGACAGGCCGTTGCTGCGA
AGGGCAGTCCAGTCGTTCTGGAGATTCGGGAGGTATGTGGATTATATCCC
CCTCTCTCACGACACAGACGTCTACCACTCCCTCTCTCACGACACAACCG
CGCCTCCTTCCCTTGTGCTTCTGTCCCTTACGCCCCCTCATTATTTCTGT
CTCTCGTAATCTAAAACTCACCCCTTCTCTTCCACTCACCCTTCCTCCCT
CCCTCCTTCCCTCCCTCCCCAGGCGACCATGGCAGACACGCGGGCCCTCG
TGGAGTTTGTGCTCAAGTGCGAAGGGGAGTGGCTCGGCGCCGGGCACGTC
AAAAAGTACGAGTCTCATTCCCCCCCCCTCCCCTCCCCTCCCTTCCTCCC
TTTCTCCGTTCCTCCCTTCCTCCTCCCTCGTTCGGTCAGTCAAGCCGCCT
TGGTCTCGTCCTGACTCCTTTCCTCTCTCCCTCCCTCCCTTCCTCCCCGT
CCCTCCAGAGAGGGACTAAACGCCCGTCTCCAATTCCACCTCTCCAACGG
CGTCCTCGTGTACATGGCCTTCGATGCGGCCTCGCCTGAGATGCTTGTTG
GTAAGGCCTCCATCCCATCCCTCCCTTCCCCCTCCCCTCCCTCCTTTCAC
CCCCTTCCTTCCTCCCTCCCTCCCTTTCTCCCTAGCCATGTAATGTTTTT
AGACCCAGCACGCCTCTTGACGCTGCTTGCCCTCCTCCCTCCCTCCCCCC
CTCTATCAGGGATCTACGCCTCTACGGCCATCGACCACATGACCATCCCC
CGCCTCCCCCTCGACCCGTCGGCCCCTCCTTCCCCCCCGCCCTCCTCCCG
CAGGTCAGAAGAAAATGAGGAGGAGGAGGAGCAAGGCGAGGACGAGGGCG
GGAGGGAGGGAGGGCATTTCTTCCCTTCTGTGAGCCAGACCTGCCCCAGG
CGGTTCCTGAGCGATGTCAAGGTAGGGAAGGAGGAAGGGAAGGAGGGGGA
GGGGAAGGGAAAGGGATGAAGATTGAAATGAAGCTGAGTCACATACCAAA
TTTTCTAACCAAGGAGGTTGCGTGTAAGGGAGGGCGAAAGTGGTGGAGAG
AAGGAAGGGAGAGAGGGAGGCTAGTCCGTGTTGTGGCTTTAATTAAGACT
GACTTATCTCCCATCCGTACTTTTTGCGGTTTCCCCCTCGTCTTCTCACG
GCCTCGTCCAGGTGATCGATAGCTACAAGCGCAGGGGCGTGGCCACCTCG
ATGCTGCTACACTTCCAAGCCACAGAGCAAGCCCTGGACGTGGGCCACGA
GGGCGGTGCGTGCCCTCCCCCTCTCCCTCCCTCCTATTCCCTCTTCCCTC
CTGCACGCTTTTTACTCGTCTCTCCTGAATGAAGCACCGTCTCTCGTATC
TCACCCAAACTACACGCATGAAAGTCACCTTTTCTGTCCCCCTCCCTCAC
ACACTCCCTCCCTCACACACTCCCTCTCAGTCCTCGCCTGCCTGTTCGTC
ACCAAGGATAACCCCGCCGGACTACGCTTGTACGAGAAAGCAGGCTACCT
GCCCGTCCAAGGCGATCTGAAACGGAAACGATTTCGTCCTTTGTTGGAAG
CGGGAGCTATTCACGAAGACGACTTGAAGGGGGTCGTCTTTATGTGCAAA
TACATCAAGCCGCTTTTGCGAAGATCGGGAGGAGGGAGGGAAGAAAGGAG
ACAGGGGGAGGGGAAGTAA
back to top

Coding sequence (CDS) from alignment at chr27:431818..434086+

>NO27G01340.1 ID=NO27G01340.1|Name=NO27G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at chr27:431818..434086+ (Nannochloropsis oceanica)
ATGCTGCTTCCAAGAAGGAGGAGAAGAAGAAGAATCTCAGGGTCGGCGTC
CTCCCCGCTCCTCGACCTTCCCATCTCCCTCCTCCTCGCCCTCATCCTCA
CCCCAGGGGCCGTTTCCTTCCTCCTCGCCCCTACGCCTAACCCTTCTCCT
TCCTCCACCTCCGCATCACACTTGAGCCATGCTGCTACTTTAGGACATAA
AAGATTAGGAGTAGATGGAGGGAGGAGAGGCAGCGACGATGTACAGTGGG
CGCGGCAGCCCCGAGGGCTATCCCAACGACATGCAGCATCCCCCACGGCC
GCTGGCACAGCCACTCTGGTGCGACCCACTGAGGAGGAGGGAGAGAGGGA
GAAGGATCACGGGAAGGTTGGAGGAGGAAAGGGAAGACAGGCCGTTGCTG
CGAAGGGCAGTCCAGTCGTTCTGGAGATTCGGGAGGCGACCATGGCAGAC
ACGCGGGCCCTCGTGGAGTTTGTGCTCAAGTGCGAAGGGGAGTGGCTCGG
CGCCGGGCACGTCAAAAAAGAGGGACTAAACGCCCGTCTCCAATTCCACC
TCTCCAACGGCGTCCTCGTGTACATGGCCTTCGATGCGGCCTCGCCTGAG
ATGCTTGTTGGGATCTACGCCTCTACGGCCATCGACCACATGACCATCCC
CCGCCTCCCCCTCGACCCGTCGGCCCCTCCTTCCCCCCCGCCCTCCTCCC
GCAGGTCAGAAGAAAATGAGGAGGAGGAGGAGCAAGGCGAGGACGAGGGC
GGGAGGGAGGGAGGGCATTTCTTCCCTTCTGTGAGCCAGACCTGCCCCAG
GCGGTTCCTGAGCGATGTCAAGGTGATCGATAGCTACAAGCGCAGGGGCG
TGGCCACCTCGATGCTGCTACACTTCCAAGCCACAGAGCAAGCCCTGGAC
GTGGGCCACGAGGGCGTCCTCGCCTGCCTGTTCGTCACCAAGGATAACCC
CGCCGGACTACGCTTGTACGAGAAAGCAGGCTACCTGCCCGTCCAAGGCG
ATCTGAAACGGAAACGATTTCGTCCTTTGTTGGAAGCGGGAGCTATTCAC
GAAGACGACTTGAAGGGGGTCGTCTTTATGTGCAAATACATCAAGCCGCT
TTTGCGAAGATCGGGAGGAGGGAGGGAAGAAAGGAGACAGGGGGAGGGGA
AGTAA
back to top
Synonyms
Publications