NO27G00980, NO27G00980 (gene) Nannochloropsis oceanica

Overview
NameNO27G00980
Unique NameNO27G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1488
Alignment locationchr27:323561..325048 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:323561..325048 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018971DUF1997
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO27G00980 vs. NCBI_GenBank
Match: EWM21006.1 (Protein of unknown function DUF1997 [Nannochloropsis gaditana])

HSP 1 Score: 399.1 bits (1024), Expect = 2.100e-107
Identity = 264/456 (57.89%), Postives = 307/456 (67.32%), Query Frame = 0 
Query:   29 GPLKALRQAAALLNSVLQLVFSSGDVFGTYSSLPSDTPTPDLGRRRGGASRSXXXXPRWGRGRIDGQGEENGGDDDKAEGYMGAEGGGEETEAGIERLSDMVSQRDLNSWEAWQGGSPRKXXXXXXXXXXXXXXXXXXMTFSTRYSCAVSVANASRLDEYMALPFDQYSLLDQSFISRVE-GKENEQGNVFRFMVPANELVGLQTVPIVDLRVDVDARKRQLSITSISSRFVARASDGTILGTQSMSLLTNNSLAFSTRIIWDSKVARQGGKLGSVPYAGTPSATGAAADEWARDVPAEGGGNGP----------------GANLARLRWRIFRRGGNAIKAAEMELPLNDKLTAGSDSPPELVNLDVASQRLRKLSCRANLEVGVVVPPPFSLLPGLILRQGASLILSTLVGTLVNRFLELLIEDYHKWQDQASREAIAGALLGYDPERFDEREI 468
            GPLK++RQA  +LNSVL ++FS+GDVFG YSS  +    P    +RGGASR+     RW  GR   +  E+    D +E  +  E   EE       +   VSQRDLNSW+ WQG     XXXXXXXXXXXXXXXXXX   STRY+C VSVANASRL+EYM LPFDQYSLLDQSFISRVE GKEN QGNVFRFMVPANELVGL TVPIVD+RVDVD  KRQL+ITSISSRFV+RA+DGTILGTQ++++LTNNSLAFSTRI W+     +  K       G P      AD   RDVP    G+ P                G N ARLR RIF R     +  + ++  N       D+  +L + D   Q  +KLSCRA++E+ V VPPPFSLLPGLILRQGASLILSTLVGTLVNRF+ELLIEDY  WQDQ SR A AG L+GY+P+RFDER I
Sbjct:  101 GPLKSVRQAVRVLNSVLHIMFSAGDVFGMYSSPSASVLAPTFKNKRGGASRA---DSRWALGRPGRRALESREHRDTSEKSVAKEDIAEEG----SEIQKFVSQRDLNSWDVWQGVDQNXXXXXXXXXXXXXXXXXXXXXLSTRYTCGVSVANASRLEEYMGLPFDQYSLLDQSFISRVEKGKENPQGNVFRFMVPANELVGLHTVPIVDVRVDVDMSKRQLAITSISSRFVSRATDGTILGTQAVNVLTNNSLAFSTRIKWNRPATTK--KYSERVQKGMP-----IADNLPRDVPYFPLGSPPYIEEESIATDEISRVSGGNFARLRKRIFSRA----RLVDDQVVQNATRFQSRDANTQLTDQDAEVQ--QKLSCRAHVEISVEVPPPFSLLPGLILRQGASLILSTLVGTLVNRFMELLIEDYQSWQDQESRVASAGGLIGYNPQRFDERTI 536
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BLAST of NO27G00980 vs. NCBI_GenBank
Match: XP_005825262.1 (hypothetical protein GUITHDRAFT_154764 [Guillardia theta CCMP2712] >EKX38282.1 hypothetical protein GUITHDRAFT_154764 [Guillardia theta CCMP2712])

HSP 1 Score: 73.9 bits (180), Expect = 1.500e-9
Identity = 66/278 (23.74%), Postives = 107/278 (38.49%), Query Frame = 0 
Query:  179 VANASRLDEYMALPFDQYSLLDQSFISRVEGKENEQGNVFRFMVPANELVGLQTVPIVDLRVDVDARKRQLSITSISSRFVARASDGTILGTQSMSLLTNNSLAFSTRIIWDSKVARQGGKLGSVPYAGTPSATGAAADEWARDVPAEGGGNGPGANLARLRWRIFRRGGNAIKAAEMELPLND--KLTAGSDSPPELVNLDVASQRLRKLSCRANLEVGVVVPPPFSLLPGLILRQGASLILSTLVGTLVNRFLELLIEDYHKWQDQASREAIAGAL 455
            VA    L  YM LP +Q+  LD ++I R++   N     +RF +P   ++ L      D+ V VD +K+QL + +  +R  A                                                     + A+E A   PA        AN++     I      +I+ A++++      K   G D+  +            +L   A ++V +  PPP SLLPG +LRQ   L+L     T++ RF +L+ EDY +W     R  + G+L
Sbjct:  136 VAENVTLGTYMTLPAEQWITLDDNYIQRLDDGSNPDDVKYRFTLPLKPMMQLPLTATCDVSVHVDKKKQQLRLEACGARLRA-----------------------------------------------------STAEEDASPAPAN------AANMSMAPPNIPPNFTESIEKADLQMGFKTLIKWKEGKDASSQ-----------GQLDLSAEVDVAITFPPPLSLLPGFLLRQACGLVLKAASSTILPRFGQLVAEDYRRWSRNEPR--VGGSL 341
The following BLAST results are available for this feature:
BLAST of NO27G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21006.12.100e-10757.89Protein of unknown function DUF1997 [Nannochlorops... [more]
XP_005825262.11.500e-923.74hypothetical protein GUITHDRAFT_154764 [Guillardia... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005109NSK005109Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00980.1NO27G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603602gene_8685Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100081g27gene9429Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00980.1NO27G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00980 ID=NO27G00980|Name=NO27G00980|organism=Nannochloropsis oceanica|type=gene|length=1488bp
ATGCTCGGCGGCAGACGTTCCGGGAATGACAATCACCACCACCAGCAACA
AACCCTTCAGCACTTTAGAGACAAGGACAAAGCGGGGCCCCTCAAAGCCC
TCCGGCAAGCCGCTGCTCTCCTAAATAGCGTTCTCCAGCTAGTCTTCTCC
TCAGGTGATGTCTTTGGTACCTATTCTTCCCTCCCTTCTGACACTCCCAC
GCCAGATCTGGGGCGACGGCGGGGGGGGGCGAGCAGAAGCGGCGGTGGCG
GCCCTCGGTGGGGACGTGGCCGCATTGATGGGCAGGGGGAAGAAAATGGT
GGTGATGACGATAAAGCAGAAGGTTATATGGGAGCGGAGGGGGGAGGAGA
GGAGACAGAGGCAGGGATTGAGAGGTTAAGTGATATGGTAAGCCAGCGGG
ATCTAAACTCGTGGGAAGCCTGGCAAGGAGGCAGCCCTCGAAAGCAACAA
GTGGCTGAGGAACAGCGGGCGCAACGCAAGCAACGACGACGGAAAAAGAT
GACGTTTTCGACCCGATATTCGTGTGCGGTGAGCGTGGCGAATGCATCGC
GGTTGGATGAGTACATGGCTTTGCCCTTTGATCAATATTCCCTGTTGGAC
CAATCTTTTATATCTCGCGTGGAGGGGAAAGAGAACGAGCAAGGCAATGT
GTTTCGGTTCATGGTCCCAGCAAATGAGTTGGTTGGCTTGCAGACTGTGC
CCATTGTCGATTTGCGCGTGGATGTGGATGCGCGGAAACGCCAACTGTCC
ATCACCTCCATCTCGTCGCGTTTCGTCGCTCGGGCTTCCGATGGCACCAT
TCTAGGGACACAGTCCATGAGCCTCCTGACTAATAACTCGCTTGCTTTCT
CTACGCGAATCATTTGGGACAGCAAGGTCGCTAGACAAGGTGGTAAGCTG
GGCTCTGTGCCTTATGCGGGCACCCCGTCTGCTACAGGTGCTGCTGCTGA
CGAATGGGCTCGAGATGTACCAGCAGAGGGTGGCGGAAACGGACCAGGGG
CCAACTTGGCGCGTTTGCGATGGCGTATCTTCCGTCGAGGCGGTAATGCA
ATCAAGGCGGCGGAGATGGAGCTGCCGTTGAATGACAAATTAACGGCGGG
ATCAGATTCTCCCCCCGAGCTGGTTAATCTGGACGTGGCCTCCCAACGAC
TGCGTAAGCTCTCGTGCCGGGCAAATTTGGAGGTGGGTGTGGTAGTTCCG
CCACCCTTTTCTTTGCTTCCTGGACTGATCCTACGACAGGGCGCCTCTCT
CATCCTCTCAACGTTGGTGGGCACGCTGGTGAATCGCTTTTTGGAACTCT
TGATCGAAGATTACCACAAATGGCAAGACCAAGCGAGTCGGGAAGCGATT
GCTGGGGCTTTACTGGGTTATGACCCTGAGCGGTTCGACGAGCGAGAGAT
TGAAGTGTCGGAGGCGGATGAAGATGAAGATGATCCGCCGCCTCCGCCGT
GCATGGATCCACTTCTAGAACCCGAGTACATTATTTAG
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protein sequence of NO27G00980.1

>NO27G00980.1-protein ID=NO27G00980.1-protein|Name=NO27G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MLGGRRSGNDNHHHQQQTLQHFRDKDKAGPLKALRQAAALLNSVLQLVFS
SGDVFGTYSSLPSDTPTPDLGRRRGGASRSGGGGPRWGRGRIDGQGEENG
GDDDKAEGYMGAEGGGEETEAGIERLSDMVSQRDLNSWEAWQGGSPRKQQ
VAEEQRAQRKQRRRKKMTFSTRYSCAVSVANASRLDEYMALPFDQYSLLD
QSFISRVEGKENEQGNVFRFMVPANELVGLQTVPIVDLRVDVDARKRQLS
ITSISSRFVARASDGTILGTQSMSLLTNNSLAFSTRIIWDSKVARQGGKL
GSVPYAGTPSATGAAADEWARDVPAEGGGNGPGANLARLRWRIFRRGGNA
IKAAEMELPLNDKLTAGSDSPPELVNLDVASQRLRKLSCRANLEVGVVVP
PPFSLLPGLILRQGASLILSTLVGTLVNRFLELLIEDYHKWQDQASREAI
AGALLGYDPERFDEREIEVSEADEDEDDPPPPPCMDPLLEPEYII*
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Synonyms
Publications