NO27G00980.1, NO27G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00980.1
Unique NameNO27G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1488
Alignment locationchr27:323561..325048 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:323561..325048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00980.1 vs.
Match: EWM21006.1 (Protein of unknown function DUF1997 [Nannochloropsis gaditana])

HSP 1 Score: 430.6 bits (1106), Expect = 6.400e-117
Identity = 276/509 (54.22%), Postives = 334/509 (65.62%), Query Frame = 0 
Query:    4 GRRSGNDNHHHQQQTLQHFRDKDKAGPLKALRQAAALLNSVLQLVFSSGDVFGTYSSLPSDTPTPDLGRRRGGASRSGGGGPRWGRGRIDGQGEENGGDDDKAEGYMGAEGGGEETEAGIERLSDMVSQRDLNSWEAWQGGSPRKQQVAEEQRAQRKQRRRKKMTFSTRYSCAVSVANASRLDEYMALPFDQYSLLDQSFISRVE-GKENEQGNVFRFMVPANELVGLQTVPIVDLRVDVDARKRQLSITSISSRFVARASDGTILGTQSMSLLTNNSLAFSTRIIWDSKVARQGGKLGSVPYAGTPSATGAAADEWARDVPAEGGGNGP----------------GANLARLRWRIFRRGGNAIKAAEMELPLNDKLTAGSDSPPELVNLDVASQRLRKLSCRANLEVGVVVPPPFSLLPGLILRQGASLILSTLVGTLVNRFLELLIEDYHKWQDQASREAIAGALLGYDPERFDEREIEVSEADEDEDDPPPPPCMDPLLEPEYII 496
            G     +N+  QQ   QH    D+ GPLK++RQA  +LNSVL ++FS+GDVFG YSS  +    P    +RGGASR+     RW  GR   +  E+    D +E  +  E   EE       +   VSQRDLNSW+ WQG    + + +E++R +R+QRRRKKMT STRY+C VSVANASRL+EYM LPFDQYSLLDQSFISRVE GKEN QGNVFRFMVPANELVGL TVPIVD+RVDVD  KRQL+ITSISSRFV+RA+DGTILGTQ++++LTNNSLAFSTRI W+     +  K       G P      AD   RDVP    G+ P                G N ARLR RIF R     +  + ++  N       D+  +L + D   Q+  KLSCRA++E+ V VPPPFSLLPGLILRQGASLILSTLVGTLVNRF+ELLIEDY  WQDQ SR A AG L+GY+P+RFDER IEVSE+D+D++     P      EPEY+I
Sbjct:   79 GAAGATENNDVQQN--QHCPITDE-GPLKSVRQAVRVLNSVLHIMFSAGDVFGMYSSPSASVLAPTFKNKRGGASRADS---RWALGRPGRRALESREHRDTSEKSVAKEDIAEEGS----EIQKFVSQRDLNSWDVWQGVDQNRHRHSEDERQRRQQRRRKKMTLSTRYTCGVSVANASRLEEYMGLPFDQYSLLDQSFISRVEKGKENPQGNVFRFMVPANELVGLHTVPIVDVRVDVDMSKRQLAITSISSRFVSRATDGTILGTQAVNVLTNNSLAFSTRIKWNRPATTK--KYSERVQKGMP-----IADNLPRDVPYFPLGSPPYIEEESIATDEISRVSGGNFARLRKRIFSRA----RLVDDQVVQNATRFQSRDANTQLTDQDAEVQQ--KLSCRAHVEISVEVPPPFSLLPGLILRQGASLILSTLVGTLVNRFMELLIEDYQSWQDQESRVASAGGLIGYNPQRFDERTIEVSESDDDDNGSALLP------EPEYMI 558
The following BLAST results are available for this feature:
BLAST of NO27G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21006.16.400e-11754.22Protein of unknown function DUF1997 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00980NO27G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00980.1NO27G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00980.1.cds1NO27G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00980.1 ID=NO27G00980.1|Name=NO27G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp
ATGCTCGGCGGCAGACGTTCCGGGAATGACAATCACCACCACCAGCAACA
AACCCTTCAGCACTTTAGAGACAAGGACAAAGCGGGGCCCCTCAAAGCCC
TCCGGCAAGCCGCTGCTCTCCTAAATAGCGTTCTCCAGCTAGTCTTCTCC
TCAGGTGATGTCTTTGGTACCTATTCTTCCCTCCCTTCTGACACTCCCAC
GCCAGATCTGGGGCGACGGCGGGGGGGGGCGAGCAGAAGCGGCGGTGGCG
GCCCTCGGTGGGGACGTGGCCGCATTGATGGGCAGGGGGAAGAAAATGGT
GGTGATGACGATAAAGCAGAAGGTTATATGGGAGCGGAGGGGGGAGGAGA
GGAGACAGAGGCAGGGATTGAGAGGTTAAGTGATATGGTAAGCCAGCGGG
ATCTAAACTCGTGGGAAGCCTGGCAAGGAGGCAGCCCTCGAAAGCAACAA
GTGGCTGAGGAACAGCGGGCGCAACGCAAGCAACGACGACGGAAAAAGAT
GACGTTTTCGACCCGATATTCGTGTGCGGTGAGCGTGGCGAATGCATCGC
GGTTGGATGAGTACATGGCTTTGCCCTTTGATCAATATTCCCTGTTGGAC
CAATCTTTTATATCTCGCGTGGAGGGGAAAGAGAACGAGCAAGGCAATGT
GTTTCGGTTCATGGTCCCAGCAAATGAGTTGGTTGGCTTGCAGACTGTGC
CCATTGTCGATTTGCGCGTGGATGTGGATGCGCGGAAACGCCAACTGTCC
ATCACCTCCATCTCGTCGCGTTTCGTCGCTCGGGCTTCCGATGGCACCAT
TCTAGGGACACAGTCCATGAGCCTCCTGACTAATAACTCGCTTGCTTTCT
CTACGCGAATCATTTGGGACAGCAAGGTCGCTAGACAAGGTGGTAAGCTG
GGCTCTGTGCCTTATGCGGGCACCCCGTCTGCTACAGGTGCTGCTGCTGA
CGAATGGGCTCGAGATGTACCAGCAGAGGGTGGCGGAAACGGACCAGGGG
CCAACTTGGCGCGTTTGCGATGGCGTATCTTCCGTCGAGGCGGTAATGCA
ATCAAGGCGGCGGAGATGGAGCTGCCGTTGAATGACAAATTAACGGCGGG
ATCAGATTCTCCCCCCGAGCTGGTTAATCTGGACGTGGCCTCCCAACGAC
TGCGTAAGCTCTCGTGCCGGGCAAATTTGGAGGTGGGTGTGGTAGTTCCG
CCACCCTTTTCTTTGCTTCCTGGACTGATCCTACGACAGGGCGCCTCTCT
CATCCTCTCAACGTTGGTGGGCACGCTGGTGAATCGCTTTTTGGAACTCT
TGATCGAAGATTACCACAAATGGCAAGACCAAGCGAGTCGGGAAGCGATT
GCTGGGGCTTTACTGGGTTATGACCCTGAGCGGTTCGACGAGCGAGAGAT
TGAAGTGTCGGAGGCGGATGAAGATGAAGATGATCCGCCGCCTCCGCCGT
GCATGGATCCACTTCTAGAACCCGAGTACATTATTTAG
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protein sequence of NO27G00980.1

>NO27G00980.1-protein ID=NO27G00980.1-protein|Name=NO27G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MLGGRRSGNDNHHHQQQTLQHFRDKDKAGPLKALRQAAALLNSVLQLVFS
SGDVFGTYSSLPSDTPTPDLGRRRGGASRSGGGGPRWGRGRIDGQGEENG
GDDDKAEGYMGAEGGGEETEAGIERLSDMVSQRDLNSWEAWQGGSPRKQQ
VAEEQRAQRKQRRRKKMTFSTRYSCAVSVANASRLDEYMALPFDQYSLLD
QSFISRVEGKENEQGNVFRFMVPANELVGLQTVPIVDLRVDVDARKRQLS
ITSISSRFVARASDGTILGTQSMSLLTNNSLAFSTRIIWDSKVARQGGKL
GSVPYAGTPSATGAAADEWARDVPAEGGGNGPGANLARLRWRIFRRGGNA
IKAAEMELPLNDKLTAGSDSPPELVNLDVASQRLRKLSCRANLEVGVVVP
PPFSLLPGLILRQGASLILSTLVGTLVNRFLELLIEDYHKWQDQASREAI
AGALLGYDPERFDEREIEVSEADEDEDDPPPPPCMDPLLEPEYII*
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mRNA from alignment at chr27:323561..325048-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00980.1 ID=NO27G00980.1|Name=NO27G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp|location=Sequence derived from alignment at chr27:323561..325048- (Nannochloropsis oceanica)
ATGCTCGGCGGCAGACGTTCCGGGAATGACAATCACCACCACCAGCAACA
AACCCTTCAGCACTTTAGAGACAAGGACAAAGCGGGGCCCCTCAAAGCCC
TCCGGCAAGCCGCTGCTCTCCTAAATAGCGTTCTCCAGCTAGTCTTCTCC
TCAGGTGATGTCTTTGGTACCTATTCTTCCCTCCCTTCTGACACTCCCAC
GCCAGATCTGGGGCGACGGCGGGGGGGGGCGAGCAGAAGCGGCGGTGGCG
GCCCTCGGTGGGGACGTGGCCGCATTGATGGGCAGGGGGAAGAAAATGGT
GGTGATGACGATAAAGCAGAAGGTTATATGGGAGCGGAGGGGGGAGGAGA
GGAGACAGAGGCAGGGATTGAGAGGTTAAGTGATATGGTAAGCCAGCGGG
ATCTAAACTCGTGGGAAGCCTGGCAAGGAGGCAGCCCTCGAAAGCAACAA
GTGGCTGAGGAACAGCGGGCGCAACGCAAGCAACGACGACGGAAAAAGAT
GACGTTTTCGACCCGATATTCGTGTGCGGTGAGCGTGGCGAATGCATCGC
GGTTGGATGAGTACATGGCTTTGCCCTTTGATCAATATTCCCTGTTGGAC
CAATCTTTTATATCTCGCGTGGAGGGGAAAGAGAACGAGCAAGGCAATGT
GTTTCGGTTCATGGTCCCAGCAAATGAGTTGGTTGGCTTGCAGACTGTGC
CCATTGTCGATTTGCGCGTGGATGTGGATGCGCGGAAACGCCAACTGTCC
ATCACCTCCATCTCGTCGCGTTTCGTCGCTCGGGCTTCCGATGGCACCAT
TCTAGGGACACAGTCCATGAGCCTCCTGACTAATAACTCGCTTGCTTTCT
CTACGCGAATCATTTGGGACAGCAAGGTCGCTAGACAAGGTGGTAAGCTG
GGCTCTGTGCCTTATGCGGGCACCCCGTCTGCTACAGGTGCTGCTGCTGA
CGAATGGGCTCGAGATGTACCAGCAGAGGGTGGCGGAAACGGACCAGGGG
CCAACTTGGCGCGTTTGCGATGGCGTATCTTCCGTCGAGGCGGTAATGCA
ATCAAGGCGGCGGAGATGGAGCTGCCGTTGAATGACAAATTAACGGCGGG
ATCAGATTCTCCCCCCGAGCTGGTTAATCTGGACGTGGCCTCCCAACGAC
TGCGTAAGCTCTCGTGCCGGGCAAATTTGGAGGTGGGTGTGGTAGTTCCG
CCACCCTTTTCTTTGCTTCCTGGACTGATCCTACGACAGGGCGCCTCTCT
CATCCTCTCAACGTTGGTGGGCACGCTGGTGAATCGCTTTTTGGAACTCT
TGATCGAAGATTACCACAAATGGCAAGACCAAGCGAGTCGGGAAGCGATT
GCTGGGGCTTTACTGGGTTATGACCCTGAGCGGTTCGACGAGCGAGAGAT
TGAAGTGTCGGAGGCGGATGAAGATGAAGATGATCCGCCGCCTCCGCCGT
GCATGGATCCACTTCTAGAACCCGAGTACATTATTTAG
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Coding sequence (CDS) from alignment at chr27:323561..325048-

>NO27G00980.1 ID=NO27G00980.1|Name=NO27G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr27:323561..325048- (Nannochloropsis oceanica)
ATGCTCGGCGGCAGACGTTCCGGGAATGACAATCACCACCACCAGCAACA
AACCCTTCAGCACTTTAGAGACAAGGACAAAGCGGGGCCCCTCAAAGCCC
TCCGGCAAGCCGCTGCTCTCCTAAATAGCGTTCTCCAGCTAGTCTTCTCC
TCAGGTGATGTCTTTGGTACCTATTCTTCCCTCCCTTCTGACACTCCCAC
GCCAGATCTGGGGCGACGGCGGGGGGGGGCGAGCAGAAGCGGCGGTGGCG
GCCCTCGGTGGGGACGTGGCCGCATTGATGGGCAGGGGGAAGAAAATGGT
GGTGATGACGATAAAGCAGAAGGTTATATGGGAGCGGAGGGGGGAGGAGA
GGAGACAGAGGCAGGGATTGAGAGGTTAAGTGATATGGTAAGCCAGCGGG
ATCTAAACTCGTGGGAAGCCTGGCAAGGAGGCAGCCCTCGAAAGCAACAA
GTGGCTGAGGAACAGCGGGCGCAACGCAAGCAACGACGACGGAAAAAGAT
GACGTTTTCGACCCGATATTCGTGTGCGGTGAGCGTGGCGAATGCATCGC
GGTTGGATGAGTACATGGCTTTGCCCTTTGATCAATATTCCCTGTTGGAC
CAATCTTTTATATCTCGCGTGGAGGGGAAAGAGAACGAGCAAGGCAATGT
GTTTCGGTTCATGGTCCCAGCAAATGAGTTGGTTGGCTTGCAGACTGTGC
CCATTGTCGATTTGCGCGTGGATGTGGATGCGCGGAAACGCCAACTGTCC
ATCACCTCCATCTCGTCGCGTTTCGTCGCTCGGGCTTCCGATGGCACCAT
TCTAGGGACACAGTCCATGAGCCTCCTGACTAATAACTCGCTTGCTTTCT
CTACGCGAATCATTTGGGACAGCAAGGTCGCTAGACAAGGTGGTAAGCTG
GGCTCTGTGCCTTATGCGGGCACCCCGTCTGCTACAGGTGCTGCTGCTGA
CGAATGGGCTCGAGATGTACCAGCAGAGGGTGGCGGAAACGGACCAGGGG
CCAACTTGGCGCGTTTGCGATGGCGTATCTTCCGTCGAGGCGGTAATGCA
ATCAAGGCGGCGGAGATGGAGCTGCCGTTGAATGACAAATTAACGGCGGG
ATCAGATTCTCCCCCCGAGCTGGTTAATCTGGACGTGGCCTCCCAACGAC
TGCGTAAGCTCTCGTGCCGGGCAAATTTGGAGGTGGGTGTGGTAGTTCCG
CCACCCTTTTCTTTGCTTCCTGGACTGATCCTACGACAGGGCGCCTCTCT
CATCCTCTCAACGTTGGTGGGCACGCTGGTGAATCGCTTTTTGGAACTCT
TGATCGAAGATTACCACAAATGGCAAGACCAAGCGAGTCGGGAAGCGATT
GCTGGGGCTTTACTGGGTTATGACCCTGAGCGGTTCGACGAGCGAGAGAT
TGAAGTGTCGGAGGCGGATGAAGATGAAGATGATCCGCCGCCTCCGCCGT
GCATGGATCCACTTCTAGAACCCGAGTACATTATTTAG
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Synonyms
Publications