NO27G00870, NO27G00870 (gene) Nannochloropsis oceanica

Overview
NameNO27G00870
Unique NameNO27G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1860
Alignment locationchr27:297890..299749 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:297890..299749 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010621DUF1214
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO27G00870 vs. NCBI_GenBank
Match: EWM20999.1 (protein of unknown function DUF1214 [Nannochloropsis gaditana])

HSP 1 Score: 533.5 bits (1373), Expect = 6.400e-148
Identity = 258/448 (57.59%), Postives = 324/448 (72.32%), Query Frame = 0 
Query:    2 MLMCPTVDVPLRGEVVGLGLVVGIGAIFIFFPLLLRFLPGLRRALPMHYTPLSDIPGCPEHYDEALICALCTLPDPNNFLTVYSYLPLDDGVSFRHPKMPKCRYFSISLYAGLYDPVQDKVPPSSCDHELAYNEDGSFDVAICDEEDRPADIPKSNWLPRQGVRDGLFVVRRYGTLPGQRIDMPSFWTMHANKPRQIKPTYRSFSGAQYAEKAPGHRYNRLLTLLKYFGVVYAILLFVGRWTVAEVNVVILVAAALPAGLLQVLYVKGLNRAKKMCDKQTQGKLHEFLDPTSLLTYDAESAKAHPEHRYYCCIYDANQGDIVITGHFFPGQQKMWTFVVYAENGLPHHHNFNDETI-TSTSTDTIFPSSKNGQIG----RGGGGDGSLTALSYRVVLTKDPLRMPQGRENVVDVSKLPRGAVILRLIYPNTKEIFDQSKPDVKVVSVQ 445
            M M P    PL+ E V +G+V+G+GA  IFFPLLLRF P LR+   +H TPLSD+PGCPEHYDEA   AL TLPDPNN+L+VYSYLPLD+G+ FRHP+MP CRYFS+SLYAGL+DPVQD+VPPS CD +L YN DGSFDVAICDEE+RPADI  +NWLPR GVRD L VVRRYGTLPGQR+DMPSF +M    P+++KP + SFSG  YAEKAP HR+ RLL LL Y G V   LL  GRW+ AE+  ++LVA A+PA LL++LY +G  +AK++   +   K++EF DP     YDA+S KAHP H+YY C +DA QGD++I G  FPG+Q+MWTFVVY E GLP + +F DET+ TS    +  P ++  + G    R          L+YR+VLT D  R     ENVVDVS++P+G V+LRLIYP T+E+F++SKP V V+  +
Sbjct:    1 MTMTPLCLFPLKEETVFMGVVIGVGATIIFFPLLLRFPPILRKLRTLHTTPLSDVPGCPEHYDEAFTSALFTLPDPNNYLSVYSYLPLDEGIRFRHPRMPVCRYFSLSLYAGLFDPVQDQVPPSLCDMDLVYNLDGSFDVAICDEEERPADISPANWLPRHGVRDALLVVRRYGTLPGQRLDMPSFHSMGPGTPKELKPAHHSFSGPHYAEKAPSHRFQRLLRLLAYLGAVACALLLAGRWSAAEITAMLLVAGAMPAILLRLLYARGRRKAKRVLSDRAY-KVNEFTDPPEARVYDADSPKAHPNHKYYSCPFDARQGDLLIIGRIFPGKQRMWTFVVYDECGLPQYQHFTDETLRTSPGAKSHLPGARRRREGTEEPRALDAGREQAGLAYRLVLTTDMRRHSGREENVVDVSRIPQGLVLLRLIYPETREVFERSKPSVTVLCTE 447
The following BLAST results are available for this feature:
BLAST of NO27G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20999.16.400e-14857.59protein of unknown function DUF1214 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005092NSK005092Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00870.1NO27G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100081g11gene9415Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00870.1NO27G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00870 ID=NO27G00870|Name=NO27G00870|organism=Nannochloropsis oceanica|type=gene|length=1860bp
ATGATGCTCATGTGTCCTACAGTCGATGTTCCCCTACGCGGCGAAGTCGT
AGGCTTAGGGTTGGTCGTGGGCATCGGGGCCATCTTCATCTTCTTCCCCT
TGCTTCTTCGCTTCCTTCCCGGCTTGCGGCGGGCGCTACCAATGCATTAC
ACACCCCTCTCGGACATTCCCGGCTGCCCAGAGCACTACGACGAGGCCTT
GATCTGCGCGCTCTGCACCCTGCCGGATCCCAACAACTTCTTGACGGTCT
ACAGCTATCTCCCCCTCGATGACGGCGTCAGCTTCCGACACCCAAAAATG
CCCAAATGTCGCTATTTCTCCATATCTCTTTATGCCGGCCTCTACGATCC
CGTCCAAGACAAAGTCCCTCCCAGCTCTTGTGACCACGAGCTTGCCTACA
ACGAGGACGGCAGCTTTGACGTTGCCATCTGCGATGAAGAGGACAGGCCT
GCTGACATCCCGAAAAGTAACTGGCTGCCTCGACAAGGTGTACGAGATGG
CTTGTTTGTCGTGCGACGCTATGGCACGCTTCCGGGGCAACGAATCGATA
TGCCTTCTTTCTGGACCATGCACGCTAACAAACCTCGGCAGATCAAGCCT
ACCTACAGAAGCTTTTCCGGGGCACAGTACGCGGAAAAGGCCCCGGGGCA
TCGATATAATCGCTTACTTACTCTATTAAAGTATTTTGGGGTAGTTTACG
CTATCCTGCTCTTCGTCGGGCGCTGGACCGTGGCGGAGGTGAACGTTGTG
ATTCTGGTCGCGGCGGCCTTGCCCGCGGGGCTCCTTCAAGTGTTGTATGT
CAAGGGCTTGAACAGGGCGAAGAAAATGTGTGACAAACAGACGCAAGGCA
AGgtaagttaaaagtgatccatgcaccgcctgatttctgtcccccaccct
gcctccctcgatcggaggtattgttcatctaaattaggtccattacccat
caccacttctctccttgctccactcaatccttaatatgaactcatcaacg
ctctccttccatacctctgtccttctcccccttcttcactcgtccagCTC
CACGAATTTTTGGACCCGACCTCCCTCCTCACCTATGACGCCGAGTCCGC
CAAAGCCCACCCCGAGCACAGATATTACTGCTGCATCTATGATGCAAATC
AAGgtacgtataagagcaagcaccatgccggcttccattggttgtcctcc
ctttatcccgttttcccttcaccattcctcgaacaaatgcaatcgctgtg
tcgagtatgtaagccaactaagtttcgtgttgagtagagaagctgcgtgc
gtgtaccggatcctcctctactcctttccctctgttcctgtcagtcaagt
taacctttgaaccccccccctcccttctttcctccctccctctcgccctc
cctctcgccctccctccctccctcccttccttccttcctcccttcctccc
tcctttaagGCGACATTGTCATCACGGGTCACTTTTTCCCGGGGCAGCAG
AAGATGTGGACTTTTGTGGTGTATGCCGAGAACGGTCTTCCGCACCACCA
CAACTTCAATGACGAGACCATCACCAGCACATCCACCGATACCATCTTTC
CTTCGAGCAAAAATGGACAGATCGGGAGGGGGGGCGGGGGAGACGGAAGT
TTGACGGCTCTGTCGTACAGGGTGGTGTTGACCAAGGACCCATTACGCAT
GCCCCAGGGACGGGAGAATGTGGTTGATGTGTCGAAGCTGCCGCGGGGGG
CGGTGATTCTCCGTCTCATTTATCCGAATACGAAGGAAATTTTTGACCAG
AGCAAGCCTGATGTGAAAGTGGTGTCGGTGCAGAAGGGAAGTTGCAAGAA
GGAGGCCTAA
back to top

protein sequence of NO27G00870.1

>NO27G00870.1-protein ID=NO27G00870.1-protein|Name=NO27G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MMLMCPTVDVPLRGEVVGLGLVVGIGAIFIFFPLLLRFLPGLRRALPMHY
TPLSDIPGCPEHYDEALICALCTLPDPNNFLTVYSYLPLDDGVSFRHPKM
PKCRYFSISLYAGLYDPVQDKVPPSSCDHELAYNEDGSFDVAICDEEDRP
ADIPKSNWLPRQGVRDGLFVVRRYGTLPGQRIDMPSFWTMHANKPRQIKP
TYRSFSGAQYAEKAPGHRYNRLLTLLKYFGVVYAILLFVGRWTVAEVNVV
ILVAAALPAGLLQVLYVKGLNRAKKMCDKQTQGKLHEFLDPTSLLTYDAE
SAKAHPEHRYYCCIYDANQGDIVITGHFFPGQQKMWTFVVYAENGLPHHH
NFNDETITSTSTDTIFPSSKNGQIGRGGGGDGSLTALSYRVVLTKDPLRM
PQGRENVVDVSKLPRGAVILRLIYPNTKEIFDQSKPDVKVVSVQKGSCKK
EA*
back to top
Synonyms
Publications