NO27G00870.1, NO27G00870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00870.1
Unique NameNO27G00870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1359
Alignment locationchr27:297890..299749 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:297890..299749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00870.1 vs.
Match: EWM20999.1 (protein of unknown function DUF1214 [Nannochloropsis gaditana])

HSP 1 Score: 533.5 bits (1373), Expect = 6.400e-148
Identity = 258/448 (57.59%), Postives = 324/448 (72.32%), Query Frame = 0 
Query:    2 MLMCPTVDVPLRGEVVGLGLVVGIGAIFIFFPLLLRFLPGLRRALPMHYTPLSDIPGCPEHYDEALICALCTLPDPNNFLTVYSYLPLDDGVSFRHPKMPKCRYFSISLYAGLYDPVQDKVPPSSCDHELAYNEDGSFDVAICDEEDRPADIPKSNWLPRQGVRDGLFVVRRYGTLPGQRIDMPSFWTMHANKPRQIKPTYRSFSGAQYAEKAPGHRYNRLLTLLKYFGVVYAILLFVGRWTVAEVNVVILVAAALPAGLLQVLYVKGLNRAKKMCDKQTQGKLHEFLDPTSLLTYDAESAKAHPEHRYYCCIYDANQGDIVITGHFFPGQQKMWTFVVYAENGLPHHHNFNDETI-TSTSTDTIFPSSKNGQIG----RGGGGDGSLTALSYRVVLTKDPLRMPQGRENVVDVSKLPRGAVILRLIYPNTKEIFDQSKPDVKVVSVQ 445
            M M P    PL+ E V +G+V+G+GA  IFFPLLLRF P LR+   +H TPLSD+PGCPEHYDEA   AL TLPDPNN+L+VYSYLPLD+G+ FRHP+MP CRYFS+SLYAGL+DPVQD+VPPS CD +L YN DGSFDVAICDEE+RPADI  +NWLPR GVRD L VVRRYGTLPGQR+DMPSF +M    P+++KP + SFSG  YAEKAP HR+ RLL LL Y G V   LL  GRW+ AE+  ++LVA A+PA LL++LY +G  +AK++   +   K++EF DP     YDA+S KAHP H+YY C +DA QGD++I G  FPG+Q+MWTFVVY E GLP + +F DET+ TS    +  P ++  + G    R          L+YR+VLT D  R     ENVVDVS++P+G V+LRLIYP T+E+F++SKP V V+  +
Sbjct:    1 MTMTPLCLFPLKEETVFMGVVIGVGATIIFFPLLLRFPPILRKLRTLHTTPLSDVPGCPEHYDEAFTSALFTLPDPNNYLSVYSYLPLDEGIRFRHPRMPVCRYFSLSLYAGLFDPVQDQVPPSLCDMDLVYNLDGSFDVAICDEEERPADISPANWLPRHGVRDALLVVRRYGTLPGQRLDMPSFHSMGPGTPKELKPAHHSFSGPHYAEKAPSHRFQRLLRLLAYLGAVACALLLAGRWSAAEITAMLLVAGAMPAILLRLLYARGRRKAKRVLSDRAY-KVNEFTDPPEARVYDADSPKAHPNHKYYSCPFDARQGDLLIIGRIFPGKQRMWTFVVYDECGLPQYQHFTDETLRTSPGAKSHLPGARRRREGTEEPRALDAGREQAGLAYRLVLTTDMRRHSGREENVVDVSRIPQGLVLLRLIYPETREVFERSKPSVTVLCTE 447
The following BLAST results are available for this feature:
BLAST of NO27G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20999.16.400e-14857.59protein of unknown function DUF1214 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00870NO27G00870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00870.1NO27G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00870.1.cds1NO27G00870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00870.1.cds2NO27G00870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00870.1.cds3NO27G00870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00870.1 ID=NO27G00870.1|Name=NO27G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
ATGATGCTCATGTGTCCTACAGTCGATGTTCCCCTACGCGGCGAAGTCGT
AGGCTTAGGGTTGGTCGTGGGCATCGGGGCCATCTTCATCTTCTTCCCCT
TGCTTCTTCGCTTCCTTCCCGGCTTGCGGCGGGCGCTACCAATGCATTAC
ACACCCCTCTCGGACATTCCCGGCTGCCCAGAGCACTACGACGAGGCCTT
GATCTGCGCGCTCTGCACCCTGCCGGATCCCAACAACTTCTTGACGGTCT
ACAGCTATCTCCCCCTCGATGACGGCGTCAGCTTCCGACACCCAAAAATG
CCCAAATGTCGCTATTTCTCCATATCTCTTTATGCCGGCCTCTACGATCC
CGTCCAAGACAAAGTCCCTCCCAGCTCTTGTGACCACGAGCTTGCCTACA
ACGAGGACGGCAGCTTTGACGTTGCCATCTGCGATGAAGAGGACAGGCCT
GCTGACATCCCGAAAAGTAACTGGCTGCCTCGACAAGGTGTACGAGATGG
CTTGTTTGTCGTGCGACGCTATGGCACGCTTCCGGGGCAACGAATCGATA
TGCCTTCTTTCTGGACCATGCACGCTAACAAACCTCGGCAGATCAAGCCT
ACCTACAGAAGCTTTTCCGGGGCACAGTACGCGGAAAAGGCCCCGGGGCA
TCGATATAATCGCTTACTTACTCTATTAAAGTATTTTGGGGTAGTTTACG
CTATCCTGCTCTTCGTCGGGCGCTGGACCGTGGCGGAGGTGAACGTTGTG
ATTCTGGTCGCGGCGGCCTTGCCCGCGGGGCTCCTTCAAGTGTTGTATGT
CAAGGGCTTGAACAGGGCGAAGAAAATGTGTGACAAACAGACGCAAGGCA
AGCTCCACGAATTTTTGGACCCGACCTCCCTCCTCACCTATGACGCCGAG
TCCGCCAAAGCCCACCCCGAGCACAGATATTACTGCTGCATCTATGATGC
AAATCAAGGCGACATTGTCATCACGGGTCACTTTTTCCCGGGGCAGCAGA
AGATGTGGACTTTTGTGGTGTATGCCGAGAACGGTCTTCCGCACCACCAC
AACTTCAATGACGAGACCATCACCAGCACATCCACCGATACCATCTTTCC
TTCGAGCAAAAATGGACAGATCGGGAGGGGGGGCGGGGGAGACGGAAGTT
TGACGGCTCTGTCGTACAGGGTGGTGTTGACCAAGGACCCATTACGCATG
CCCCAGGGACGGGAGAATGTGGTTGATGTGTCGAAGCTGCCGCGGGGGGC
GGTGATTCTCCGTCTCATTTATCCGAATACGAAGGAAATTTTTGACCAGA
GCAAGCCTGATGTGAAAGTGGTGTCGGTGCAGAAGGGAAGTTGCAAGAAG
GAGGCCTAA
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protein sequence of NO27G00870.1

>NO27G00870.1-protein ID=NO27G00870.1-protein|Name=NO27G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MMLMCPTVDVPLRGEVVGLGLVVGIGAIFIFFPLLLRFLPGLRRALPMHY
TPLSDIPGCPEHYDEALICALCTLPDPNNFLTVYSYLPLDDGVSFRHPKM
PKCRYFSISLYAGLYDPVQDKVPPSSCDHELAYNEDGSFDVAICDEEDRP
ADIPKSNWLPRQGVRDGLFVVRRYGTLPGQRIDMPSFWTMHANKPRQIKP
TYRSFSGAQYAEKAPGHRYNRLLTLLKYFGVVYAILLFVGRWTVAEVNVV
ILVAAALPAGLLQVLYVKGLNRAKKMCDKQTQGKLHEFLDPTSLLTYDAE
SAKAHPEHRYYCCIYDANQGDIVITGHFFPGQQKMWTFVVYAENGLPHHH
NFNDETITSTSTDTIFPSSKNGQIGRGGGGDGSLTALSYRVVLTKDPLRM
PQGRENVVDVSKLPRGAVILRLIYPNTKEIFDQSKPDVKVVSVQKGSCKK
EA*
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mRNA from alignment at chr27:297890..299749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00870.1 ID=NO27G00870.1|Name=NO27G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1860bp|location=Sequence derived from alignment at chr27:297890..299749- (Nannochloropsis oceanica)
ATGATGCTCATGTGTCCTACAGTCGATGTTCCCCTACGCGGCGAAGTCGT
AGGCTTAGGGTTGGTCGTGGGCATCGGGGCCATCTTCATCTTCTTCCCCT
TGCTTCTTCGCTTCCTTCCCGGCTTGCGGCGGGCGCTACCAATGCATTAC
ACACCCCTCTCGGACATTCCCGGCTGCCCAGAGCACTACGACGAGGCCTT
GATCTGCGCGCTCTGCACCCTGCCGGATCCCAACAACTTCTTGACGGTCT
ACAGCTATCTCCCCCTCGATGACGGCGTCAGCTTCCGACACCCAAAAATG
CCCAAATGTCGCTATTTCTCCATATCTCTTTATGCCGGCCTCTACGATCC
CGTCCAAGACAAAGTCCCTCCCAGCTCTTGTGACCACGAGCTTGCCTACA
ACGAGGACGGCAGCTTTGACGTTGCCATCTGCGATGAAGAGGACAGGCCT
GCTGACATCCCGAAAAGTAACTGGCTGCCTCGACAAGGTGTACGAGATGG
CTTGTTTGTCGTGCGACGCTATGGCACGCTTCCGGGGCAACGAATCGATA
TGCCTTCTTTCTGGACCATGCACGCTAACAAACCTCGGCAGATCAAGCCT
ACCTACAGAAGCTTTTCCGGGGCACAGTACGCGGAAAAGGCCCCGGGGCA
TCGATATAATCGCTTACTTACTCTATTAAAGTATTTTGGGGTAGTTTACG
CTATCCTGCTCTTCGTCGGGCGCTGGACCGTGGCGGAGGTGAACGTTGTG
ATTCTGGTCGCGGCGGCCTTGCCCGCGGGGCTCCTTCAAGTGTTGTATGT
CAAGGGCTTGAACAGGGCGAAGAAAATGTGTGACAAACAGACGCAAGGCA
AGGTAAGTTAAAAGTGATCCATGCACCGCCTGATTTCTGTCCCCCACCCT
GCCTCCCTCGATCGGAGGTATTGTTCATCTAAATTAGGTCCATTACCCAT
CACCACTTCTCTCCTTGCTCCACTCAATCCTTAATATGAACTCATCAACG
CTCTCCTTCCATACCTCTGTCCTTCTCCCCCTTCTTCACTCGTCCAGCTC
CACGAATTTTTGGACCCGACCTCCCTCCTCACCTATGACGCCGAGTCCGC
CAAAGCCCACCCCGAGCACAGATATTACTGCTGCATCTATGATGCAAATC
AAGGTACGTATAAGAGCAAGCACCATGCCGGCTTCCATTGGTTGTCCTCC
CTTTATCCCGTTTTCCCTTCACCATTCCTCGAACAAATGCAATCGCTGTG
TCGAGTATGTAAGCCAACTAAGTTTCGTGTTGAGTAGAGAAGCTGCGTGC
GTGTACCGGATCCTCCTCTACTCCTTTCCCTCTGTTCCTGTCAGTCAAGT
TAACCTTTGAACCCCCCCCCTCCCTTCTTTCCTCCCTCCCTCTCGCCCTC
CCTCTCGCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTCCCTTCCTCCC
TCCTTTAAGGCGACATTGTCATCACGGGTCACTTTTTCCCGGGGCAGCAG
AAGATGTGGACTTTTGTGGTGTATGCCGAGAACGGTCTTCCGCACCACCA
CAACTTCAATGACGAGACCATCACCAGCACATCCACCGATACCATCTTTC
CTTCGAGCAAAAATGGACAGATCGGGAGGGGGGGCGGGGGAGACGGAAGT
TTGACGGCTCTGTCGTACAGGGTGGTGTTGACCAAGGACCCATTACGCAT
GCCCCAGGGACGGGAGAATGTGGTTGATGTGTCGAAGCTGCCGCGGGGGG
CGGTGATTCTCCGTCTCATTTATCCGAATACGAAGGAAATTTTTGACCAG
AGCAAGCCTGATGTGAAAGTGGTGTCGGTGCAGAAGGGAAGTTGCAAGAA
GGAGGCCTAA
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Coding sequence (CDS) from alignment at chr27:297890..299749-

>NO27G00870.1 ID=NO27G00870.1|Name=NO27G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at chr27:297890..299749- (Nannochloropsis oceanica)
ATGATGCTCATGTGTCCTACAGTCGATGTTCCCCTACGCGGCGAAGTCGT
AGGCTTAGGGTTGGTCGTGGGCATCGGGGCCATCTTCATCTTCTTCCCCT
TGCTTCTTCGCTTCCTTCCCGGCTTGCGGCGGGCGCTACCAATGCATTAC
ACACCCCTCTCGGACATTCCCGGCTGCCCAGAGCACTACGACGAGGCCTT
GATCTGCGCGCTCTGCACCCTGCCGGATCCCAACAACTTCTTGACGGTCT
ACAGCTATCTCCCCCTCGATGACGGCGTCAGCTTCCGACACCCAAAAATG
CCCAAATGTCGCTATTTCTCCATATCTCTTTATGCCGGCCTCTACGATCC
CGTCCAAGACAAAGTCCCTCCCAGCTCTTGTGACCACGAGCTTGCCTACA
ACGAGGACGGCAGCTTTGACGTTGCCATCTGCGATGAAGAGGACAGGCCT
GCTGACATCCCGAAAAGTAACTGGCTGCCTCGACAAGGTGTACGAGATGG
CTTGTTTGTCGTGCGACGCTATGGCACGCTTCCGGGGCAACGAATCGATA
TGCCTTCTTTCTGGACCATGCACGCTAACAAACCTCGGCAGATCAAGCCT
ACCTACAGAAGCTTTTCCGGGGCACAGTACGCGGAAAAGGCCCCGGGGCA
TCGATATAATCGCTTACTTACTCTATTAAAGTATTTTGGGGTAGTTTACG
CTATCCTGCTCTTCGTCGGGCGCTGGACCGTGGCGGAGGTGAACGTTGTG
ATTCTGGTCGCGGCGGCCTTGCCCGCGGGGCTCCTTCAAGTGTTGTATGT
CAAGGGCTTGAACAGGGCGAAGAAAATGTGTGACAAACAGACGCAAGGCA
AGCTCCACGAATTTTTGGACCCGACCTCCCTCCTCACCTATGACGCCGAG
TCCGCCAAAGCCCACCCCGAGCACAGATATTACTGCTGCATCTATGATGC
AAATCAAGGCGACATTGTCATCACGGGTCACTTTTTCCCGGGGCAGCAGA
AGATGTGGACTTTTGTGGTGTATGCCGAGAACGGTCTTCCGCACCACCAC
AACTTCAATGACGAGACCATCACCAGCACATCCACCGATACCATCTTTCC
TTCGAGCAAAAATGGACAGATCGGGAGGGGGGGCGGGGGAGACGGAAGTT
TGACGGCTCTGTCGTACAGGGTGGTGTTGACCAAGGACCCATTACGCATG
CCCCAGGGACGGGAGAATGTGGTTGATGTGTCGAAGCTGCCGCGGGGGGC
GGTGATTCTCCGTCTCATTTATCCGAATACGAAGGAAATTTTTGACCAGA
GCAAGCCTGATGTGAAAGTGGTGTCGGTGCAGAAGGGAAGTTGCAAGAAG
GAGGCCTAA
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Synonyms
Publications