NO27G00580, NO27G00580 (gene) Nannochloropsis oceanica

Overview
NameNO27G00580
Unique NameNO27G00580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1161
Alignment locationchr27:213470..214630 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:213470..214630 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO27G00580 vs. NCBI_GenBank
Match: XP_005855513.1 (hypothetical protein NGA_0639900 [Nannochloropsis gaditana CCMP526] >EKU20852.1 hypothetical protein NGA_0639900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 226.1 bits (575), Expect = 1.300e-55
Identity = 143/275 (52.00%), Postives = 171/275 (62.18%), Query Frame = 0 
Query:    6 QAAASRPSPSLSTSFLLAVLAVAFTPSSAXXXXXXXXXXXXXLSCTSSLLISRP-PSRFQSLFRRRPFSPVFRPLQHSFS--------GSSSSSPFSLLHLQA----------NKNNIDEAENEEEEQGELRKLLTKDTKEKPLLVYLAFVTLSLLALGIGTYKAGGPLLGLGFSDDRNFYFDSAPSYALLLVYPPLFLFFPEARSLLLKTLVVSFLATCLIFFVPFQSLGWEPTNENVLITAAIPILSYVTFFSWRATRVYLEIAEEDRLEREE 262
            +A  S P   LS  F L +LA+A                   L C+ +++  RP PS   S    +        L+H F+           SSSP   L L +          NK      +N   E GELRKLLT DTKEKPLLVYL  ++++LLALG+GTY+ GGPLLGLGFSDD NFYFD+APSYALLLVYPPLFLFFPEAR+LLLKTLVVSFL T  I+F P+  LGWEPTNE+VLIT A+PILSY+TFFSWRAT  Y+EI EE+  E +E
Sbjct:   16 RAFFSPPRRLLSLHFHLLLLALAI------------------LFCSHNVVARRPCPSFISSSLSNKSL------LKHRFTLRPLCFVKTRISSSPLPKLPLTSSFPLFAATDQNKKESPAEKNTGNEAGELRKLLTNDTKEKPLLVYLTLISIALLALGVGTYEFGGPLLGLGFSDDSNFYFDAAPSYALLLVYPPLFLFFPEARNLLLKTLVVSFLITLPIYFFPYHVLGWEPTNEHVLITVAVPILSYLTFFSWRATAAYMEIVEEEGKEGKE 266
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BLAST of NO27G00580 vs. NCBI_GenBank
Match: EWM21035.1 (hypothetical protein Naga_100422g1 [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 1.700e-18
Identity = 79/189 (41.80%), Postives = 98/189 (51.85%), Query Frame = 0 
Query:    6 QAAASRPSPSLSTSFLLAVLAVAFTPSSAXXXXXXXXXXXXXLSCTSSLLISRP-PSRFQSLFRRRPFSPVFRPLQHSFS--------GSSSSSPFSLLHLQA----------NKNNIDEAENEEEEQGELRKLLTKDTKEKPLLVYLAFVTLSLLALGIGTYKAGGPLLGLGFSDDRNFYFDSAPSYA 176
            +A  S P   LS  F L +LA+A                   L C+ +++  RP PS   S    +        L+H F+           SSSP   L L +          NK      +N   E GELRKLLT DTKEKPLLVYL  ++++LLALG+GTY+ GGPLLGLGFSDD NFYFD+APSYA
Sbjct:   16 RAFFSPPRRLLSLHFHLLLLALAI------------------LFCSHNVVARRPCPSFISSSLSNKSL------LKHRFTLRPLCFVKTRISSSPLPKLPLTSSFPLFAATDQNKKESPAEKNTGNEAGELRKLLTNDTKEKPLLVYLTLISIALLALGVGTYEFGGPLLGLGFSDDSNFYFDAAPSYA 180
[Close]
BLAST of NO27G00580 vs. NCBI_GenBank
Match: XP_005706010.1 (hypothetical protein Gasu_31300 [Galdieria sulphuraria] >EME29490.1 hypothetical protein Gasu_31300 [Galdieria sulphuraria])

HSP 1 Score: 81.3 bits (199), Expect = 5.200e-12
Identity = 51/147 (34.69%), Postives = 86/147 (58.50%), Query Frame = 0 
Query:  106 EAENEEEEQGELRKLLTKDTKE--KPLLVYLAFVTLSLLALGIGTYKAGGPLLGLGFSDDRNFYFDSAPSYALLLVYPPLFLFFPEARSLLLKTLVVSFLATCLIFFVPFQSLGWEPTNENVLITAAIPILSYVTFFSWRATRVYLE 251
            ++  E EE    ++L+    K+  +P++++L   T+ L +L   T K  GPLLGLGFS+ +  YFDSAP  + + ++    LFFPE  + + + LV  F+ + +I+ +   S+   P++E  L+  +IP L Y TFFSWR  + +L+
Sbjct:    5 KSSTETEEHPSHQRLVADLAKKVPRPVVLFLVLSTVFLGSLFPLTLKLQGPLLGLGFSESKVLYFDSAPGVSFVTLWLLTILFFPEKATYIFRILVAIFVVSSIIYGLVQYSV-IAPSDEAALVIVSIPTLLYTTFFSWRLRQYHLQ 150
The following BLAST results are available for this feature:
BLAST of NO27G00580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005855513.11.300e-5552.00hypothetical protein NGA_0639900 [Nannochloropsis ... [more]
EWM21035.11.700e-1841.80hypothetical protein Naga_100422g1 [Nannochloropsi... [more]
XP_005706010.15.200e-1234.69hypothetical protein Gasu_31300 [Galdieria sulphur... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL058nonsL058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005056NSK005056Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00580.1NO27G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603459gene_8648Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00580.1NO27G00580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00580 ID=NO27G00580|Name=NO27G00580|organism=Nannochloropsis oceanica|type=gene|length=1161bp
TAAAAACCCGCCACAATCACTCACACCTTTGACATGTAAATACAACGCAG
CAGCCACACGAGTGGCTATGGGTGTCAGACAACAAGCAGCAGCGTCGCGG
CCAAGCCCCTCACTTTCAACCTCCTTCCTCCTTGCAGTACTTGCCGTTGC
CTTCACTCCATCCAGTGCTGCCTTTCTCCTCCTGCCTTCATCCTCCTCTC
CCAGCTCCCTTTCCTGCACCTCATCGTTACTCATTAGCCGGCCACCATCG
CGCTTCCAGTCTCTGTTTCGAAGACGGCCCTTTTCCCCCGTCTTCCGCCC
CCTCCAGCACAGCTTCTCCGGCTCCTCCTCTTCCTCCCCCTTCTCCCTTC
TCCACCTTCAAGCAAATAAGAACAACATCGACGAGGCTGAAAATGAGGAG
GAGGAGCAAGGCGAGCTTCGCAAACTTCTCACGAAGGACACGAAAGAAAA
ACCCTTGCTCGTTTACCTTGCATTCGTGACGCTTTCCCTCTTGGCCCTGG
gtacgtgatatagtcattttatcccctccatccaccccacccttcttcat
ttctcttcatacccctttccatacaacgtggctggaactctgccctttct
ggtatgcttttaccttgtccattgatattcaccctcccttcctccctccc
tccctctatccacgattcagGCATCGGTACCTACAAAGCCGGAGGTCCTC
TACTCGGATTAGGATTCAGCGACGATCGGAATTTCTACTTTGACTCGGCA
CCGTCCTATGCCCTCCTTCTCGTGTACCCGCCCCTCTTCCTCTTTTTCCC
GGAGGCGCGGTCCCTCTTGTTGAAGACTCTAGTTGTCTCGTTCTTGGCGA
CGTGTTTAATTTTCTTTGTCCCCTTTCAGTCCTTGGGCTGGGAACCTACG
AATGAAAATGTTTTGATCACTGCAGCTATCCCTATCCTGTCATATGTGAC
ATTTTTCTCGTGGAGGGCAACCCGGGTGTATCTGGAAATCGCCGAGGAGG
ACAGGCTGGAGAGGGAGGAACGGGAGGGAGGGGAGGAGGACGTGATGAAA
TGAAGCCACAAATAAATGCAATTATAAATGAATAATGACAGTGTGTGGAT
TGCGCCTTTCTGTGTGTCCTTGCCCTTGAAGGGATTGTCACGTCGTCATC
CAAGGGGGCAA
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protein sequence of NO27G00580.1

>NO27G00580.1-protein ID=NO27G00580.1-protein|Name=NO27G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MGVRQQAAASRPSPSLSTSFLLAVLAVAFTPSSAAFLLLPSSSSPSSLSC
TSSLLISRPPSRFQSLFRRRPFSPVFRPLQHSFSGSSSSSPFSLLHLQAN
KNNIDEAENEEEEQGELRKLLTKDTKEKPLLVYLAFVTLSLLALGIGTYK
AGGPLLGLGFSDDRNFYFDSAPSYALLLVYPPLFLFFPEARSLLLKTLVV
SFLATCLIFFVPFQSLGWEPTNENVLITAAIPILSYVTFFSWRATRVYLE
IAEEDRLEREEREGGEEDVMK*
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Synonyms
Publications