NO27G00580.1, NO27G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00580.1
Unique NameNO27G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length991
Alignment locationchr27:213470..214630 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:213470..214630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00580.1 vs.
Match: XP_005855513.1 (hypothetical protein NGA_0639900 [Nannochloropsis gaditana CCMP526]; EKU20852.1 hypothetical protein NGA_0639900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 218.8 bits (556), Expect = 2.100e-53
Identity = 143/261 (54.79%), Postives = 170/261 (65.13%), Query Frame = 0 
Query:    6 QAAASRPSPSLSTSFLLAVLAVAFTPSS---AAFLLLPS--SSSPSSLSCTSSLLISRPPSRFQSLFRRRPFSPVFRPLQHSFSGSSSSSPFSLLHLQANKNNIDEAENEEEEQGELRKLLTKDTKEKPLLVYLAFVTLSLLALGIGTYKAGGPLLGLGFSDDRNFYFDSAPSYALLLVYPPLFLFFPEARSLLLKTLVVSFLATCLIFFVPFQSLGWEPTNENVLITAAIPILSYVTFFSWRATRVYLEIAEEDRLEREE 262
            +A  S P   LS  F L +LA+A    S    A    PS  SSS S+ S        RP    ++     P   +  PL  SF   +++          NK      +N   E GELRKLLT DTKEKPLLVYL  ++++LLALG+GTY+ GGPLLGLGFSDD NFYFD+APSYALLLVYPPLFLFFPEAR+LLLKTLVVSFL T  I+F P+  LGWEPTNE+VLIT A+PILSY+TFFSWRAT  Y+EI EE+  E +E
Sbjct:   16 RAFFSPPRRLLSLHFHLLLLALAILFCSHNVVARRPCPSFISSSLSNKSLLKHRFTLRPLCFVKTRISSSPLPKL--PLTSSFPLFAATDQ--------NKKESPAEKNTGNEAGELRKLLTNDTKEKPLLVYLTLISIALLALGVGTYEFGGPLLGLGFSDDSNFYFDAAPSYALLLVYPPLFLFFPEARNLLLKTLVVSFLITLPIYFFPYHVLGWEPTNEHVLITVAVPILSYLTFFSWRATAAYMEIVEEEGKEGKE 266
The following BLAST results are available for this feature:
BLAST of NO27G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855513.12.100e-5354.79hypothetical protein NGA_0639900 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00580NO27G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00580.1NO27G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00580.1.cds1NO27G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00580.1.cds2NO27G00580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00580.1 ID=NO27G00580.1|Name=NO27G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=991bp
TAAAAACCCGCCACAATCACTCACACCTTTGACATGTAAATACAACGCAG
CAGCCACACGAGTGGCTATGGGTGTCAGACAACAAGCAGCAGCGTCGCGG
CCAAGCCCCTCACTTTCAACCTCCTTCCTCCTTGCAGTACTTGCCGTTGC
CTTCACTCCATCCAGTGCTGCCTTTCTCCTCCTGCCTTCATCCTCCTCTC
CCAGCTCCCTTTCCTGCACCTCATCGTTACTCATTAGCCGGCCACCATCG
CGCTTCCAGTCTCTGTTTCGAAGACGGCCCTTTTCCCCCGTCTTCCGCCC
CCTCCAGCACAGCTTCTCCGGCTCCTCCTCTTCCTCCCCCTTCTCCCTTC
TCCACCTTCAAGCAAATAAGAACAACATCGACGAGGCTGAAAATGAGGAG
GAGGAGCAAGGCGAGCTTCGCAAACTTCTCACGAAGGACACGAAAGAAAA
ACCCTTGCTCGTTTACCTTGCATTCGTGACGCTTTCCCTCTTGGCCCTGG
GCATCGGTACCTACAAAGCCGGAGGTCCTCTACTCGGATTAGGATTCAGC
GACGATCGGAATTTCTACTTTGACTCGGCACCGTCCTATGCCCTCCTTCT
CGTGTACCCGCCCCTCTTCCTCTTTTTCCCGGAGGCGCGGTCCCTCTTGT
TGAAGACTCTAGTTGTCTCGTTCTTGGCGACGTGTTTAATTTTCTTTGTC
CCCTTTCAGTCCTTGGGCTGGGAACCTACGAATGAAAATGTTTTGATCAC
TGCAGCTATCCCTATCCTGTCATATGTGACATTTTTCTCGTGGAGGGCAA
CCCGGGTGTATCTGGAAATCGCCGAGGAGGACAGGCTGGAGAGGGAGGAA
CGGGAGGGAGGGGAGGAGGACGTGATGAAATGAAGCCACAAATAAATGCA
ATTATAAATGAATAATGACAGTGTGTGGATTGCGCCTTTCTGTGTGTCCT
TGCCCTTGAAGGGATTGTCACGTCGTCATCCAAGGGGGCAA
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protein sequence of NO27G00580.1

>NO27G00580.1-protein ID=NO27G00580.1-protein|Name=NO27G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MGVRQQAAASRPSPSLSTSFLLAVLAVAFTPSSAAFLLLPSSSSPSSLSC
TSSLLISRPPSRFQSLFRRRPFSPVFRPLQHSFSGSSSSSPFSLLHLQAN
KNNIDEAENEEEEQGELRKLLTKDTKEKPLLVYLAFVTLSLLALGIGTYK
AGGPLLGLGFSDDRNFYFDSAPSYALLLVYPPLFLFFPEARSLLLKTLVV
SFLATCLIFFVPFQSLGWEPTNENVLITAAIPILSYVTFFSWRATRVYLE
IAEEDRLEREEREGGEEDVMK*
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mRNA from alignment at chr27:213470..214630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00580.1 ID=NO27G00580.1|Name=NO27G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp|location=Sequence derived from alignment at chr27:213470..214630+ (Nannochloropsis oceanica)
TAAAAACCCGCCACAATCACTCACACCTTTGACATGTAAATACAACGCAG
CAGCCACACGAGTGGCTATGGGTGTCAGACAACAAGCAGCAGCGTCGCGG
CCAAGCCCCTCACTTTCAACCTCCTTCCTCCTTGCAGTACTTGCCGTTGC
CTTCACTCCATCCAGTGCTGCCTTTCTCCTCCTGCCTTCATCCTCCTCTC
CCAGCTCCCTTTCCTGCACCTCATCGTTACTCATTAGCCGGCCACCATCG
CGCTTCCAGTCTCTGTTTCGAAGACGGCCCTTTTCCCCCGTCTTCCGCCC
CCTCCAGCACAGCTTCTCCGGCTCCTCCTCTTCCTCCCCCTTCTCCCTTC
TCCACCTTCAAGCAAATAAGAACAACATCGACGAGGCTGAAAATGAGGAG
GAGGAGCAAGGCGAGCTTCGCAAACTTCTCACGAAGGACACGAAAGAAAA
ACCCTTGCTCGTTTACCTTGCATTCGTGACGCTTTCCCTCTTGGCCCTGG
GTACGTGATATAGTCATTTTATCCCCTCCATCCACCCCACCCTTCTTCAT
TTCTCTTCATACCCCTTTCCATACAACGTGGCTGGAACTCTGCCCTTTCT
GGTATGCTTTTACCTTGTCCATTGATATTCACCCTCCCTTCCTCCCTCCC
TCCCTCTATCCACGATTCAGGCATCGGTACCTACAAAGCCGGAGGTCCTC
TACTCGGATTAGGATTCAGCGACGATCGGAATTTCTACTTTGACTCGGCA
CCGTCCTATGCCCTCCTTCTCGTGTACCCGCCCCTCTTCCTCTTTTTCCC
GGAGGCGCGGTCCCTCTTGTTGAAGACTCTAGTTGTCTCGTTCTTGGCGA
CGTGTTTAATTTTCTTTGTCCCCTTTCAGTCCTTGGGCTGGGAACCTACG
AATGAAAATGTTTTGATCACTGCAGCTATCCCTATCCTGTCATATGTGAC
ATTTTTCTCGTGGAGGGCAACCCGGGTGTATCTGGAAATCGCCGAGGAGG
ACAGGCTGGAGAGGGAGGAACGGGAGGGAGGGGAGGAGGACGTGATGAAA
TGAAGCCACAAATAAATGCAATTATAAATGAATAATGACAGTGTGTGGAT
TGCGCCTTTCTGTGTGTCCTTGCCCTTGAAGGGATTGTCACGTCGTCATC
CAAGGGGGCAA
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Coding sequence (CDS) from alignment at chr27:213470..214630+

>NO27G00580.1 ID=NO27G00580.1|Name=NO27G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at chr27:213470..214630+ (Nannochloropsis oceanica)
ATGGGTGTCAGACAACAAGCAGCAGCGTCGCGGCCAAGCCCCTCACTTTC
AACCTCCTTCCTCCTTGCAGTACTTGCCGTTGCCTTCACTCCATCCAGTG
CTGCCTTTCTCCTCCTGCCTTCATCCTCCTCTCCCAGCTCCCTTTCCTGC
ACCTCATCGTTACTCATTAGCCGGCCACCATCGCGCTTCCAGTCTCTGTT
TCGAAGACGGCCCTTTTCCCCCGTCTTCCGCCCCCTCCAGCACAGCTTCT
CCGGCTCCTCCTCTTCCTCCCCCTTCTCCCTTCTCCACCTTCAAGCAAAT
AAGAACAACATCGACGAGGCTGAAAATGAGGAGGAGGAGCAAGGCGAGCT
TCGCAAACTTCTCACGAAGGACACGAAAGAAAAACCCTTGCTCGTTTACC
TTGCATTCGTGACGCTTTCCCTCTTGGCCCTGGGCATCGGTACCTACAAA
GCCGGAGGTCCTCTACTCGGATTAGGATTCAGCGACGATCGGAATTTCTA
CTTTGACTCGGCACCGTCCTATGCCCTCCTTCTCGTGTACCCGCCCCTCT
TCCTCTTTTTCCCGGAGGCGCGGTCCCTCTTGTTGAAGACTCTAGTTGTC
TCGTTCTTGGCGACGTGTTTAATTTTCTTTGTCCCCTTTCAGTCCTTGGG
CTGGGAACCTACGAATGAAAATGTTTTGATCACTGCAGCTATCCCTATCC
TGTCATATGTGACATTTTTCTCGTGGAGGGCAACCCGGGTGTATCTGGAA
ATCGCCGAGGAGGACAGGCTGGAGAGGGAGGAACGGGAGGGAGGGGAGGA
GGACGTGATGAAATGA
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Synonyms
Publications