NO27G00290, NO27G00290 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G00290 vs. NCBI_GenBank
Match: EWM21068.1 (Reduced growth phenotype protein 1, partial [Nannochloropsis gaditana]) HSP 1 Score: 216.9 bits (551), Expect = 1.600e-52 Identity = 106/183 (57.92%), Postives = 136/183 (74.32%), Query Frame = 0 Query: 346 QISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEEDALREAALIEEEKQARIEELRDLLLSSTSDNETETEDDTLILEETEVVDEDEGGEGQPRKSGCPETVTALHTSKLRWTFPIRVIPPNDTDPTDLFLDYHVARCSMEM 529 Q+SAC++REEW YH QP+ RKLL RTV DTFH+LTAS L+CAV LK+PIDA+P+F TPFT LEWKVCFEFVT++EEDAL EAA + +E++AR+E + LL+S E+ ++ EE E +SGCPETVT TSKLRW++P+RV+PP D+DPTDLF+D HV RC++EM Sbjct: 10 QVSACLIREEWRYHPQPSHRKLLDRTVLDTFHDLTASSLTCAVSLKIPIDATPSFVTPFTSLEWKVCFEFVTNQEEDALDEAAAVADEEKARLERINARLLASWGKG---GEEVGVVWEEEEXXXXXXXXXXXXXESGCPETVTPARTSKLRWSYPVRVLPPTDSDPTDLFMDSHVERCAIEM 189
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_021346063.1 (RAB6A-GEF complex partner protein 2-like [Mizuhopecten yessoensis] >OWF54079.1 Retrograde Golgi transport protein RGP1-like [Mizuhopecten yessoensis]) HSP 1 Score: 75.1 bits (183), Expect = 7.300e-10 Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 0 Query: 306 YAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCL---SCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTS 419 Y I N + KF+ + QAY+ G G FDF+DG + C Q S + EE ++ +RK T +F + CL + + VP+ A+P F T CL W++ FEFVTS Sbjct: 214 YNITNAKGKVAKFILFKQAYKLGEDIVGAFDFTDGTVSCVQFSVTLQNEEQI--SEECRRKPSQGTAVTSFVKHQEMCLHTEKTHINIPVPLTATPAFITDIVCLRWRLHFEFVTS 327
BLAST of NO27G00290 vs. NCBI_GenBank
Match: GAY06342.1 (Hypothetical protein PINS_014143 [Pythium insidiosum]) HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9 Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 0 Query: 304 TIYAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEEDA 424 +IY I A+L +F+ Q + PG GVFDFS+G + C+ ISA + +E K++ V + HELTA + + VP DA P+ T C +W + FEF TS DA Sbjct: 487 SIYTIGKDDAHLVRFLLTKQFFHPGDVLLGVFDFSNGKIPCHAISASLCVDETLAAMSLQPGKVVQSKVIASTHELTALAVHTNIRFCVPHDAIPSIQTDLVCFQWLLRFEFTTSVTADA 606
BLAST of NO27G00290 vs. NCBI_GenBank
Match: GAY04821.1 (choline-phosphate cytidylyltransferase B [Pythium insidiosum]) HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9 Identity = 54/171 (31.58%), Postives = 76/171 (44.44%), Query Frame = 0 Query: 268 DDRNDVYMAGLTFRPSSLP---------PSSSLPS------SPARRGGPACTIYAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEEDA 424 DDRND+ + S++P P PS R +IY I A+L +F+ Q + PG GVFDFS+G + C+ ISA + +E K++ V + HELTA + + VP DA P+ T C +W + FEF TS DA Sbjct: 436 DDRNDMLRRARSVSVSAVPVGVRNGSEVPFEVRPSLMHGRVETERLQRTQTSIYTIGKDDAHLVRFLLTKQFFHPGDVLLGVFDFSNGKIPCHAISASLCVDETLAAMSLQPGKVVQSKVIASTHELTALAVHTNIRFCVPHDAIPSIQTDLVCFQWLLRFEFTTSVTADA 606
BLAST of NO27G00290 vs. NCBI_GenBank
Match: GAX99200.1 (choline-phosphate cytidylyltransferase B [Pythium insidiosum]) HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9 Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 0 Query: 304 TIYAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEEDA 424 +IY I A+L +F+ Q + PG GVFDFS+G + C+ ISA + +E K++ V + HELTA + + VP DA P+ T C +W + FEF TS DA Sbjct: 487 SIYTIGKDDAHLVRFLLTKQFFHPGDVLLGVFDFSNGKIPCHAISASLCVDETLAAMSLQPGKVVQSKVIASTHELTALAVHTNIRFCVPHDAIPSIQTDLVCFQWLLRFEFTTSVTADA 606
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_019926006.1 (PREDICTED: RAB6A-GEF complex partner protein 2-like [Crassostrea gigas]) HSP 1 Score: 73.6 bits (179), Expect = 2.100e-9 Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 0 Query: 306 YAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCL---SCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTS 419 Y I N + KF+ + QAY+ G GVFDFS+G + C Q S + EE A+ +RK+ + ++ + CL V + VP+ A+P F T CL W++ FEFVTS Sbjct: 23 YNITNAKGKVAKFILFKQAYKLGEDIVGVFDFSEGTVPCVQFSVTLQSEEQI--AEECRRKVGHGSSYTSYVKHQDMCLHTEKTHVNIPVPLSATPGFMTDIVCLRWRLHFEFVTS 136
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_022331569.1 (RAB6A-GEF complex partner protein 2-like [Crassostrea virginica] >XP_022333511.1 RAB6A-GEF complex partner protein 2-like [Crassostrea virginica]) HSP 1 Score: 72.4 bits (176), Expect = 4.800e-9 Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 0 Query: 306 YAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCL---SCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTS 419 Y I N + KF+ + QAY+ G GVFDFS+G + C Q S + EE A+ +RK+ + ++ + CL + + +P+ A+P F T CL W++ FEFVTS Sbjct: 212 YNITNAKGKVAKFILFKQAYKLGEDIVGVFDFSEGTVPCVQFSVTLQSEEQI--AEECRRKVGHGSSYTSYVKHQDMCLHTEKTHINVPIPLSATPGFMTEIVCLRWRLHFEFVTS 325
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_013081032.1 (PREDICTED: RAB6A-GEF complex partner protein 2-like isoform X1 [Biomphalaria glabrata] >XP_013081033.1 PREDICTED: RAB6A-GEF complex partner protein 2-like isoform X1 [Biomphalaria glabrata]) HSP 1 Score: 70.5 bits (171), Expect = 1.800e-8 Identity = 39/119 (32.77%), Postives = 61/119 (51.26%), Query Frame = 0 Query: 306 YAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCA---VFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEE 422 Y I N + KF+ + QAY+ G G+FDFS G + C Q S + EE ++ +R+L T ++ + CL + + +P+ A+P F T C W++ FEFVTS +E Sbjct: 222 YNITNARGRVAKFLLFKQAYKLGEDIVGMFDFSVGTVTCVQYSVTLQSEEQV--SEECRRRLSQGTAVTSYVKHQEMCLHTVRTHMNIPIPLTATPGFMTDIVCQRWRLHFEFVTSLDE 338
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_013081034.1 (PREDICTED: RAB6A-GEF complex partner protein 2-like isoform X2 [Biomphalaria glabrata]) HSP 1 Score: 70.5 bits (171), Expect = 1.800e-8 Identity = 39/119 (32.77%), Postives = 61/119 (51.26%), Query Frame = 0 Query: 306 YAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCA---VFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEE 422 Y I N + KF+ + QAY+ G G+FDFS G + C Q S + EE ++ +R+L T ++ + CL + + +P+ A+P F T C W++ FEFVTS +E Sbjct: 212 YNITNARGRVAKFLLFKQAYKLGEDIVGMFDFSVGTVTCVQYSVTLQSEEQV--SEECRRRLSQGTAVTSYVKHQEMCLHTVRTHMNIPIPLTATPGFMTDIVCQRWRLHFEFVTSLDE 328
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_024054001.1 (RAB6A-GEF complex partner protein 2 [Terrapene mexicana triunguis]) HSP 1 Score: 70.1 bits (170), Expect = 2.400e-8 Identity = 41/122 (33.61%), Postives = 58/122 (47.54%), Query Frame = 0 Query: 305 IYAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREE------WTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKE 421 +Y I N +GKF + Y+ G G F+FS+G + C Q S + EE H QP AR E H +S L VP+ ++P F+T L+W++ FEFVTS+E Sbjct: 186 VYNISNSRGKVGKFGIFKTVYKIGEDILGTFNFSEGDIPCLQYSVSLQTEESIQEEFQRRHGQPVSYSTHARHQESCLHTARSS-----FSLPVPLSSTPGFTTNIVSLKWRLHFEFVTSRE 302 The following BLAST results are available for this feature:
BLAST of NO27G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G00290 ID=NO27G00290|Name=NO27G00290|organism=Nannochloropsis oceanica|type=gene|length=3355bpback to top protein sequence of NO27G00290.1 >NO27G00290.1-protein ID=NO27G00290.1-protein|Name=NO27G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bpback to top Synonyms
Publications
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