NO27G00290.1, NO27G00290.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G00290.1
Unique Name	NO27G00290.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1895
Alignment location	chr27:103499..106853 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:103499..106853 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO27G00290.1 vs.
Match: EWM21068.1 (Reduced growth phenotype protein 1, partial [Nannochloropsis gaditana])

HSP 1 Score: 222.6 bits (566), Expect = 2.800e-54
Identity = 109/183 (59.56%), Postives = 141/183 (77.05%), Query Frame = 0

Query:  346 QISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEEDALREAALIEEEKQARIEELRDLLLSSTSDNETETEDDTLILEETEVVDEDEGGEGQPRKSGCPETVTALHTSKLRWTFPIRVIPPNDTDPTDLFLDYHVARCSMEM 529
            Q+SAC++REEW YH QP+ RKLL RTV DTFH+LTAS L+CAV LK+PIDA+P+F TPFT LEWKVCFEFVT++EEDAL EAA + +E++AR+E +   LL+S        E+  ++ EE E  +E+  G G   +SGCPETVT   TSKLRW++P+RV+PP D+DPTDLF+D HV RC++EM
Sbjct:   10 QVSACLIREEWRYHPQPSHRKLLDRTVLDTFHDLTASSLTCAVSLKIPIDATPSFVTPFTSLEWKVCFEFVTNQEEDALDEAAAVADEEKARLERINARLLASWGKG---GEEVGVVWEEEEEGEEEGLGVGTGIESGCPETVTPARTSKLRWSYPVRVLPPTDSDPTDLFMDSHVERCAIEM 189

The following BLAST results are available for this feature:

BLAST of NO27G00290.1 vs.

BLAST of NO27G00290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21068.1	2.800e-54	59.56	Reduced growth phenotype protein 1, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G00290	NO27G00290	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00290.1	NO27G00290.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00290.1.cds1	NO27G00290.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00290.1.cds2	NO27G00290.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00290.1.cds3	NO27G00290.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00290.1.cds4	NO27G00290.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00290.1.cds5	NO27G00290.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00290.1.cds6	NO27G00290.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00290.1.cds7	NO27G00290.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00290.1.cds8	NO27G00290.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00290.1.cds9	NO27G00290.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:103499..106853+
coding sequence from alignment at chr27:103499..106853+

mRNA sequence

>NO27G00290.1 ID=NO27G00290.1|Name=NO27G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1895bp
CTTTAAACCCCTCCCTCCCTTCCTTCCTCTTTCCCCCCTGTCCTAACCCT
GCACCAGCGGACCAGCCCGCAGAGCGTGTCTCCATCCGTGTGCACGGCCA
TGCACGTATCGATCACCGCTGGCTCCCCGACGTCAGTCTCGCCCGTCCTC
CTCCTCTCCCTCCCTCCCTCTCTCCCTCCCACCCTCCTCCGCCTTCGTCT
TCGGTACCGCCGGTGCCTGGGCATGAAGAAGGTGGAGAAGGAGAAAGAGG
AGGGGGCGGTATTGCATCCTCTTTGTACCGGTTTAGCGTCTCTTTGCTCG
GCATGGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAGAACGAGGAA
GGGAGAGAGGAAAGGGGGAAGCAGCATTCTTCCCCTCCCTTGAACAAGAG
GGTGACGGATCCGCTGCTGCTGCCGGCGTCAAACCCCTATTTTGGGAGCA
CCGAGTCTCTCCTTCCATCCTACCCGGATTTACGCAAGCAAGCTGGCCTG
GCCTGCGTCTACACCACGCCTCCTCTCGTCTTGACACGGGCTCGGACCCC
TTTCGCGCCTTGCCAGCAGCTGACGTACCGCTTTCGATTGGCCCTACCTG
CGCACCTCCTTCCCTCCTACAATCGAGGCACAGGCGCCCGTTTCTTCTAC
ATGTGTACGGTGGCCGTCGGCGGGCAAGGGCAAGAACGGCCCATGCGCTA
CATCCACATTCCCTTTACTGTCCTCTCCTCGGGCTTCATGGACCTCCCCA
TGCCCCCTTCAAATTACGTGGCTGTGGGTTTCCTCGAGGGGGAAGAAGTT
CACTCCCGGCTAATCGGAGAAGAAGAAAGGAGAGAGATTTACGGGGAAGG
CGGTAACGACCAGGACGAAGGCGAGCGTGGATTTTGCTGGAGGCGCTTCT
CAGCCAAGGTACGAAAAATATCCCTACCCTCCTTCCCTCCCTTCCTCCTT
CCTTCCTTGCCATTTTTCCCTCCCTCCATTCCTCCCGGCTTTGCACCGAC
TGATCCTCTCTCCCCCCCGCAGTATCTACGGAATGCCAACGAGGAGGTCA
TCCCTCACAACTACCACGATGACTCTGACAATGAGGAGGAGGAGGAATGG
AAGGATGATCGCAACGACGTCTACATGGCGGGGCTGACCTTCCGCCCTTC
CTCCCTCCCACCCTCGTCCTCCCTCCCGTCCTCGCCGGCCAGAAGAGGAG
GCCCTGCATGCACGATTTATGCTATCCGAAACGGGACCGCTAATTTAGGC
AAGTTTGTGACGTACTCACAGGCGTATCGGCCAGGGGCTCCATTTGATGG
AGTCTTCGACTTCTCGGATGGGATCCTGCGGTGTTACCAGATATCTGCAT
GCATGGTCCGCGAAGAGTGGACTTATCACGCTCAACCCGCACAGCGCAAG
TTGTTGGCGCGCACAGTCGAAGATACTTTCCACGAACTCACTGCATCGTG
TTTGTCGTGCGCGGTCTTTCTCAAGGTCCCTATCGATGCCTCTCCTACTT
TTTCCACGCCGTTTACGTGCTTGGAATGGAAAGTGTGCTTCGAGTTTGTC
ACTAGCAAGGAAGAGGACGCTCTGCGCGAAGCAGCGCTCATCGAAGAAGA
GAAGCAGGCAAGGATCGAGGAGCTTCGCGACCTCCTACTTTCTTCCACCT
CTGACAATGAGACGGAAACGGAAGATGATACTTTGATTTTGGAAGAGACG
GAGGTCGTGGACGAAGACGAGGGAGGAGAAGGGCAACCTAGGAAAAGTGG
ATGTCCCGAGACGGTGACTGCTCTCCATACCTCCAAGCTGCGGTGGACAT
TTCCCATTCGCGTGATCCCGCCGAATGACACGGATCCAACTGACTTATTT
TTGGATTATCATGTGGCTCGCTGCTCGATGGAAATGCATATTTAG

protein sequence of NO27G00290.1

>NO27G00290.1-protein ID=NO27G00290.1-protein|Name=NO27G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MGGGGGGGEGGGENEEGREERGKQHSSPPLNKRVTDPLLLPASNPYFGST
ESLLPSYPDLRKQAGLACVYTTPPLVLTRARTPFAPCQQLTYRFRLALPA
HLLPSYNRGTGARFFYMCTVAVGGQGQERPMRYIHIPFTVLSSGFMDLPM
PPSNYVAVGFLEGEEVHSRLIGEEERREIYGEGGNDQDEGERGFCWRRFS
AKVRKISLPSFPPFLLPSLPFFPPSIPPGFAPTDPLSPPQYLRNANEEVI
PHNYHDDSDNEEEEEWKDDRNDVYMAGLTFRPSSLPPSSSLPSSPARRGG
PACTIYAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISAC
MVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTF
STPFTCLEWKVCFEFVTSKEEDALREAALIEEEKQARIEELRDLLLSSTS
DNETETEDDTLILEETEVVDEDEGGEGQPRKSGCPETVTALHTSKLRWTF
PIRVIPPNDTDPTDLFLDYHVARCSMEMHI*

mRNA from alignment at chr27:103499..106853+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G00290.1 ID=NO27G00290.1|Name=NO27G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=3355bp|location=Sequence derived from alignment at chr27:103499..106853+ (Nannochloropsis oceanica)
CTTTAAACCCCTCCCTCCCTTCCTTCCTCTTTCCCCCCTGTCCTAACCCT
GCACCAGCGGACCAGCCCGCAGAGCGTGTCTCCATCCGTGTGCACGGCCA
TGCACGTATCGATCACCGCTGGCTCCCCGACGTCAGTCTCGCCCGTCCTC
CTCCTCTCCCTCCCTCCCTCTCTCCCTCCCACCCTCCTCCGCCTTCGTCT
TCGGTACCGCCGGTGCCTGGGCATGAAGAAGGTGGAGAAGGAGAAAGAGG
AGGGGGCGGTATTGCATCCTCTTTGTACCGGTTTAGCGTCTCTTTGCTCG
GCATGGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAGAACGAGGAA
GGGAGAGAGGAAAGGGGGAAGCAGCATTCTTCCCCTCCCTTGAACAAGAG
GGTGACGGATCCGCTGCTGCTGCCGGCGTCAAACCCCTATTTTGGGAGCA
CCGAGGTAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGCGGGATGGAGG
GAGGGAGGGACGGGTATGAACGGTCCTGGCCTTATTACTTCCTTCCTTCC
TCCTCTCGTCCCTCCTTCCCTCCCTCAGTCTCTCCTTCCATCCTACCCGG
ATTTACGCAAGCAAGCTGGCCTGGCCTGCGTCTACACCACGCCTCCTCTC
GTCTTGACACGGGCTCGGACCCCTTTCGCGCCTTGCCAGCAGCTGACGTA
CCGCTTTCGATTGGCCCTACCTGCGCACCTCCTTCCCTCCTACAATCGAG
GTAGGCGTTGGGTTTGTCATCTGTTTCCAGCTTCTTTTTTCCTTTTTCTC
TTTCTTTTTCTTGTCCTGTTCGTCGTCTCGACGCAGTTTGGCACTAACTT
CCTCCCTCCCTCCCTCCCTTCCCAGGCACAGGCGCCCGTTTCTTCTACAT
GTGTACGGTGGCCGTCGGCGGGCAAGGGCAAGAACGGCCCATGCGCTACA
TCCACATTCCCTTTACTGTCCTCTCCTCGGGCTTCATGGGTACGTCCTCC
CGCCCTCCCGCCCTCCCGTCCTCCCTCCCTCCTTCCTTCCACCCCGTCTC
CGCCTCACCGATATCCATTCCCTCCCTCCCGCCCTCCTTCCCTCTTTCCC
CCCCTCCCTCCCCTCCTCCCTCCAGACCTCCCCATGCCCCCTTCAAATTA
CGTGGCTGTGGGTTTCCTCGAGGGGGAAGAAGTTCACTCCCGGCTAATCG
GAGAAGAAGAAAGGAGAGAGATTTACGGGGAAGGTAGAGAAGGAAGGAGG
GAGAGAGGGGGGGAGGGAGGACCGATAGATTCCGTCCTGTGTCAACTGTA
ATTTTAAATACCCCCCTGATTTCTACCTCCAACGACAATCCGTTAATAAA
CAGGCGGTAACGACCAGGACGAAGGCGAGCGTGGATTTTGCTGGAGGCGC
TTCTCAGCCAAGGTACGAAAAATATCCCTACCCTCCTTCCCTCCCTTCCT
CCTTCCTTCCTTGCCATTTTTCCCTCCCTCCATTCCTCCCGGCTTTGCAC
CGACTGATCCTCTCTCCCCCCCGCAGTATCTACGGAATGCCAACGAGGAG
GTCATCCCTCACAACTACCACGATGACTCTGACAATGAGGAGGAGGAGGA
ATGGAAGGATGATCGGTAAGAAAAGAGGAAGGGAGGGAGGAAGGGAAGAA
GAGAGGGAGGAAAGCCGTGATATCGATAGGAGGGGAGACAGAAGAGGAGA
AGCAGATAGGATAATTCTAATATTTTTTCTTTCTTTTCCTCCCTCCCTCC
CTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCCACTTCTCC
AGCAACGACGTCTACATGGCGGGGCTGACCTTCCGCCCTTCCTCCCTCCC
ACCCTCGTCCTCCCTCCCGTCCTCGCCGGCCAGAAGAGGAGGCCCTGCAT
GCACGATTTATGCTATCCGAAACGGGACCGCTAATTTAGGTTTGGGGGGC
AGGGAAGGAGGGAGGGAGGGACGAGGGGAAAAGGGAGCCAGAAAGGGAGG
AATAGACAGGCTCCTCTCTTGCGTACACTTACTTTCTGCTAACGATATCC
TTTTATGCTTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCTTCCTT
CCCTTCCTCTTGCGCAAGGCAAGTTTGTGACGTACTCACAGGCGTATCGG
CCAGGGGCTCCATTTGATGGAGTCTTCGACTTCTCGGATGGGATCCTGCG
GTGTTACCAGGTAGGGATAACGCGAAGCAGGGAGAGAGTGAGGGAGGGAG
GGAGGGGATGCGGGACGAGAGGCCGATTGGTTCTCTGTCATTCTGCTCTC
TCCTAGGTTTCTGTGCATCGAGCTCGAGAAATATGACTCTATCAAGGATC
TGCTTGTCCAATACAAATTATTGCGTAGCACAAATATTTTCCTTTGTTCC
TCCTCTATGTCTCTTCCTCCTCTTCCCCCCGTCTGATCGCTTATGCGTGT
CAGGTCCACGAGGAGAGGACCTTGTCACACTCGGCCGGCCGTCGCGCACA
CACCTCGGGGAATACACTCTTTTATCACTTCACCCTTCACTCTTTTATCA
CTTCAACCTTCTCACCCCGTTTTCTCCTTGCCCTCATTCATTTTCCAGAT
ATCTGCATGCATGGTCCGCGAAGAGTGGACTTATCACGCTCAACCCGCAC
AGCGCAAGTTGTTGGCGCGCACAGTCGAAGATACTTTCCACGAACTCACT
GCATCGTGTTTGTCGTGCGCGGTCTTTCTCAAGGTACGACCAGGGAGGCT
AACCAAGGTGTAATGGTCATGGATGGGTTTCCAAAGCAGAAACAGAAAGT
AAAGACTGAGGAAATAGTTGTCACAGGGTAGAATAATGAGGGGACGATGG
ATACGCGTGCAATGCATGGGAATAGACCTCGATGTCACCCATTTATCTAC
TGACTCCTCGTTCCCTCCCCCTCTTAATCATACAGGTCCCTATCGATGCC
TCTCCTACTTTTTCCACGCCGTTTACGTGCTTGGAATGGAAAGTGTGCTT
CGAGTTTGTCACTAGCAAGGAAGAGGACGCTCTGCGCGAAGCAGCGCTCA
TCGAAGAAGAGAAGCAGGCAAGGATCGAGGAGCTTCGCGACCTCCTACTT
TCTTCCACCTCTGACAATGAGACGGAAACGGAAGATGATACTTTGATTTT
GGAAGAGACGGAGGTCGTGGACGAAGACGAGGGAGGAGAAGGGCAACCTA
GGAAAAGTGGATGTCCCGAGACGGTGACTGCTCTCCATACCTCCAAGCTG
CGGTGGACATTTCCCATTCGCGTGATCCCGCCGAATGACACGGATCCAAC
TGACTTATTTTTGGATTATCATGTGGCTCGCTGCTCGATGGAAATGCATA
TTTAG

Coding sequence (CDS) from alignment at chr27:103499..106853+

>NO27G00290.1 ID=NO27G00290.1|Name=NO27G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at chr27:103499..106853+ (Nannochloropsis oceanica)
ATGGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAGAACGAGGAAGG
GAGAGAGGAAAGGGGGAAGCAGCATTCTTCCCCTCCCTTGAACAAGAGGG
TGACGGATCCGCTGCTGCTGCCGGCGTCAAACCCCTATTTTGGGAGCACC
GAGTCTCTCCTTCCATCCTACCCGGATTTACGCAAGCAAGCTGGCCTGGC
CTGCGTCTACACCACGCCTCCTCTCGTCTTGACACGGGCTCGGACCCCTT
TCGCGCCTTGCCAGCAGCTGACGTACCGCTTTCGATTGGCCCTACCTGCG
CACCTCCTTCCCTCCTACAATCGAGGCACAGGCGCCCGTTTCTTCTACAT
GTGTACGGTGGCCGTCGGCGGGCAAGGGCAAGAACGGCCCATGCGCTACA
TCCACATTCCCTTTACTGTCCTCTCCTCGGGCTTCATGGACCTCCCCATG
CCCCCTTCAAATTACGTGGCTGTGGGTTTCCTCGAGGGGGAAGAAGTTCA
CTCCCGGCTAATCGGAGAAGAAGAAAGGAGAGAGATTTACGGGGAAGGCG
GTAACGACCAGGACGAAGGCGAGCGTGGATTTTGCTGGAGGCGCTTCTCA
GCCAAGGTACGAAAAATATCCCTACCCTCCTTCCCTCCCTTCCTCCTTCC
TTCCTTGCCATTTTTCCCTCCCTCCATTCCTCCCGGCTTTGCACCGACTG
ATCCTCTCTCCCCCCCGCAGTATCTACGGAATGCCAACGAGGAGGTCATC
CCTCACAACTACCACGATGACTCTGACAATGAGGAGGAGGAGGAATGGAA
GGATGATCGCAACGACGTCTACATGGCGGGGCTGACCTTCCGCCCTTCCT
CCCTCCCACCCTCGTCCTCCCTCCCGTCCTCGCCGGCCAGAAGAGGAGGC
CCTGCATGCACGATTTATGCTATCCGAAACGGGACCGCTAATTTAGGCAA
GTTTGTGACGTACTCACAGGCGTATCGGCCAGGGGCTCCATTTGATGGAG
TCTTCGACTTCTCGGATGGGATCCTGCGGTGTTACCAGATATCTGCATGC
ATGGTCCGCGAAGAGTGGACTTATCACGCTCAACCCGCACAGCGCAAGTT
GTTGGCGCGCACAGTCGAAGATACTTTCCACGAACTCACTGCATCGTGTT
TGTCGTGCGCGGTCTTTCTCAAGGTCCCTATCGATGCCTCTCCTACTTTT
TCCACGCCGTTTACGTGCTTGGAATGGAAAGTGTGCTTCGAGTTTGTCAC
TAGCAAGGAAGAGGACGCTCTGCGCGAAGCAGCGCTCATCGAAGAAGAGA
AGCAGGCAAGGATCGAGGAGCTTCGCGACCTCCTACTTTCTTCCACCTCT
GACAATGAGACGGAAACGGAAGATGATACTTTGATTTTGGAAGAGACGGA
GGTCGTGGACGAAGACGAGGGAGGAGAAGGGCAACCTAGGAAAAGTGGAT
GTCCCGAGACGGTGACTGCTCTCCATACCTCCAAGCTGCGGTGGACATTT
CCCATTCGCGTGATCCCGCCGAATGACACGGATCCAACTGACTTATTTTT
GGATTATCATGTGGCTCGCTGCTCGATGGAAATGCATATTTAG

Synonyms

Publications