NO27G00290, NO27G00290 (gene) Nannochloropsis oceanica

Overview
NameNO27G00290
Unique NameNO27G00290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3355
Alignment locationchr27:103499..106853 +

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Properties
Property NameValue
DescriptionReduced growth phenotype protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:103499..106853 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014848Rgp1
Homology
BLAST of NO27G00290 vs. NCBI_GenBank
Match: EWM21068.1 (Reduced growth phenotype protein 1, partial [Nannochloropsis gaditana])

HSP 1 Score: 216.9 bits (551), Expect = 1.600e-52
Identity = 106/183 (57.92%), Postives = 136/183 (74.32%), Query Frame = 0
Query:  346 QISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEEDALREAALIEEEKQARIEELRDLLLSSTSDNETETEDDTLILEETEVVDEDEGGEGQPRKSGCPETVTALHTSKLRWTFPIRVIPPNDTDPTDLFLDYHVARCSMEM 529
            Q+SAC++REEW YH QP+ RKLL RTV DTFH+LTAS L+CAV LK+PIDA+P+F TPFT LEWKVCFEFVT++EEDAL EAA + +E++AR+E +   LL+S        E+  ++ EE E             +SGCPETVT   TSKLRW++P+RV+PP D+DPTDLF+D HV RC++EM
Sbjct:   10 QVSACLIREEWRYHPQPSHRKLLDRTVLDTFHDLTASSLTCAVSLKIPIDATPSFVTPFTSLEWKVCFEFVTNQEEDALDEAAAVADEEKARLERINARLLASWGKG---GEEVGVVWEEEEXXXXXXXXXXXXXESGCPETVTPARTSKLRWSYPVRVLPPTDSDPTDLFMDSHVERCAIEM 189          
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_021346063.1 (RAB6A-GEF complex partner protein 2-like [Mizuhopecten yessoensis] >OWF54079.1 Retrograde Golgi transport protein RGP1-like [Mizuhopecten yessoensis])

HSP 1 Score: 75.1 bits (183), Expect = 7.300e-10
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 0
Query:  306 YAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCL---SCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTS 419
            Y I N    + KF+ + QAY+ G    G FDF+DG + C Q S  +  EE    ++  +RK    T   +F +    CL      + + VP+ A+P F T   CL W++ FEFVTS
Sbjct:  214 YNITNAKGKVAKFILFKQAYKLGEDIVGAFDFTDGTVSCVQFSVTLQNEEQI--SEECRRKPSQGTAVTSFVKHQEMCLHTEKTHINIPVPLTATPAFITDIVCLRWRLHFEFVTS 327          
BLAST of NO27G00290 vs. NCBI_GenBank
Match: GAY06342.1 (Hypothetical protein PINS_014143 [Pythium insidiosum])

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9
Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 0
Query:  304 TIYAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEEDA 424
            +IY I    A+L +F+   Q + PG    GVFDFS+G + C+ ISA +  +E          K++   V  + HELTA  +   +   VP DA P+  T   C +W + FEF TS   DA
Sbjct:  487 SIYTIGKDDAHLVRFLLTKQFFHPGDVLLGVFDFSNGKIPCHAISASLCVDETLAAMSLQPGKVVQSKVIASTHELTALAVHTNIRFCVPHDAIPSIQTDLVCFQWLLRFEFTTSVTADA 606          
BLAST of NO27G00290 vs. NCBI_GenBank
Match: GAY04821.1 (choline-phosphate cytidylyltransferase B [Pythium insidiosum])

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9
Identity = 54/171 (31.58%), Postives = 76/171 (44.44%), Query Frame = 0
Query:  268 DDRNDVYMAGLTFRPSSLP---------PSSSLPS------SPARRGGPACTIYAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEEDA 424
            DDRND+     +   S++P         P    PS         R      +IY I    A+L +F+   Q + PG    GVFDFS+G + C+ ISA +  +E          K++   V  + HELTA  +   +   VP DA P+  T   C +W + FEF TS   DA
Sbjct:  436 DDRNDMLRRARSVSVSAVPVGVRNGSEVPFEVRPSLMHGRVETERLQRTQTSIYTIGKDDAHLVRFLLTKQFFHPGDVLLGVFDFSNGKIPCHAISASLCVDETLAAMSLQPGKVVQSKVIASTHELTALAVHTNIRFCVPHDAIPSIQTDLVCFQWLLRFEFTTSVTADA 606          
BLAST of NO27G00290 vs. NCBI_GenBank
Match: GAX99200.1 (choline-phosphate cytidylyltransferase B [Pythium insidiosum])

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9
Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 0
Query:  304 TIYAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEEDA 424
            +IY I    A+L +F+   Q + PG    GVFDFS+G + C+ ISA +  +E          K++   V  + HELTA  +   +   VP DA P+  T   C +W + FEF TS   DA
Sbjct:  487 SIYTIGKDDAHLVRFLLTKQFFHPGDVLLGVFDFSNGKIPCHAISASLCVDETLAAMSLQPGKVVQSKVIASTHELTALAVHTNIRFCVPHDAIPSIQTDLVCFQWLLRFEFTTSVTADA 606          
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_019926006.1 (PREDICTED: RAB6A-GEF complex partner protein 2-like [Crassostrea gigas])

HSP 1 Score: 73.6 bits (179), Expect = 2.100e-9
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 0
Query:  306 YAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCL---SCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTS 419
            Y I N    + KF+ + QAY+ G    GVFDFS+G + C Q S  +  EE    A+  +RK+   +   ++ +    CL      V + VP+ A+P F T   CL W++ FEFVTS
Sbjct:   23 YNITNAKGKVAKFILFKQAYKLGEDIVGVFDFSEGTVPCVQFSVTLQSEEQI--AEECRRKVGHGSSYTSYVKHQDMCLHTEKTHVNIPVPLSATPGFMTDIVCLRWRLHFEFVTS 136          
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_022331569.1 (RAB6A-GEF complex partner protein 2-like [Crassostrea virginica] >XP_022333511.1 RAB6A-GEF complex partner protein 2-like [Crassostrea virginica])

HSP 1 Score: 72.4 bits (176), Expect = 4.800e-9
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 0
Query:  306 YAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCL---SCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTS 419
            Y I N    + KF+ + QAY+ G    GVFDFS+G + C Q S  +  EE    A+  +RK+   +   ++ +    CL      + + +P+ A+P F T   CL W++ FEFVTS
Sbjct:  212 YNITNAKGKVAKFILFKQAYKLGEDIVGVFDFSEGTVPCVQFSVTLQSEEQI--AEECRRKVGHGSSYTSYVKHQDMCLHTEKTHINVPIPLSATPGFMTEIVCLRWRLHFEFVTS 325          
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_013081032.1 (PREDICTED: RAB6A-GEF complex partner protein 2-like isoform X1 [Biomphalaria glabrata] >XP_013081033.1 PREDICTED: RAB6A-GEF complex partner protein 2-like isoform X1 [Biomphalaria glabrata])

HSP 1 Score: 70.5 bits (171), Expect = 1.800e-8
Identity = 39/119 (32.77%), Postives = 61/119 (51.26%), Query Frame = 0
Query:  306 YAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCA---VFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEE 422
            Y I N    + KF+ + QAY+ G    G+FDFS G + C Q S  +  EE    ++  +R+L   T   ++ +    CL      + + +P+ A+P F T   C  W++ FEFVTS +E
Sbjct:  222 YNITNARGRVAKFLLFKQAYKLGEDIVGMFDFSVGTVTCVQYSVTLQSEEQV--SEECRRRLSQGTAVTSYVKHQEMCLHTVRTHMNIPIPLTATPGFMTDIVCQRWRLHFEFVTSLDE 338          
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_013081034.1 (PREDICTED: RAB6A-GEF complex partner protein 2-like isoform X2 [Biomphalaria glabrata])

HSP 1 Score: 70.5 bits (171), Expect = 1.800e-8
Identity = 39/119 (32.77%), Postives = 61/119 (51.26%), Query Frame = 0
Query:  306 YAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCA---VFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKEE 422
            Y I N    + KF+ + QAY+ G    G+FDFS G + C Q S  +  EE    ++  +R+L   T   ++ +    CL      + + +P+ A+P F T   C  W++ FEFVTS +E
Sbjct:  212 YNITNARGRVAKFLLFKQAYKLGEDIVGMFDFSVGTVTCVQYSVTLQSEEQV--SEECRRRLSQGTAVTSYVKHQEMCLHTVRTHMNIPIPLTATPGFMTDIVCQRWRLHFEFVTSLDE 328          
BLAST of NO27G00290 vs. NCBI_GenBank
Match: XP_024054001.1 (RAB6A-GEF complex partner protein 2 [Terrapene mexicana triunguis])

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-8
Identity = 41/122 (33.61%), Postives = 58/122 (47.54%), Query Frame = 0
Query:  305 IYAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISACMVREE------WTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTFSTPFTCLEWKVCFEFVTSKE 421
            +Y I N    +GKF  +   Y+ G    G F+FS+G + C Q S  +  EE         H QP      AR  E   H   +S       L VP+ ++P F+T    L+W++ FEFVTS+E
Sbjct:  186 VYNISNSRGKVGKFGIFKTVYKIGEDILGTFNFSEGDIPCLQYSVSLQTEESIQEEFQRRHGQPVSYSTHARHQESCLHTARSS-----FSLPVPLSSTPGFTTNIVSLKWRLHFEFVTSRE 302          
The following BLAST results are available for this feature:
BLAST of NO27G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21068.11.600e-5257.92Reduced growth phenotype protein 1, partial [Nanno... [more]
XP_021346063.17.300e-1035.34RAB6A-GEF complex partner protein 2-like [Mizuhope... [more]
GAY06342.11.300e-935.83Hypothetical protein PINS_014143 [Pythium insidios... [more]
GAY04821.11.300e-931.58choline-phosphate cytidylyltransferase B [Pythium ... [more]
GAX99200.11.300e-935.83choline-phosphate cytidylyltransferase B [Pythium ... [more]
XP_019926006.12.100e-936.21PREDICTED: RAB6A-GEF complex partner protein 2-lik... [more]
XP_022331569.14.800e-934.48RAB6A-GEF complex partner protein 2-like [Crassost... [more]
XP_013081032.11.800e-832.77PREDICTED: RAB6A-GEF complex partner protein 2-lik... [more]
XP_013081034.11.800e-832.77PREDICTED: RAB6A-GEF complex partner protein 2-lik... [more]
XP_024054001.12.400e-833.61RAB6A-GEF complex partner protein 2 [Terrapene mex... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00290.1NO27G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101000g1gene9355Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00290.1NO27G00290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00290 ID=NO27G00290|Name=NO27G00290|organism=Nannochloropsis oceanica|type=gene|length=3355bp
CTTTAAACCCCTCCCTCCCTTCCTTCCTCTTTCCCCCCTGTCCTAACCCT
GCACCAGCGGACCAGCCCGCAGAGCGTGTCTCCATCCGTGTGCACGGCCA
TGCACGTATCGATCACCGCTGGCTCCCCGACGTCAGTCTCGCCCGTCCTC
CTCCTCTCCCTCCCTCCCTCTCTCCCTCCCACCCTCCTCCGCCTTCGTCT
TCGGTACCGCCGGTGCCTGGGCATGAAGAAGGTGGAGAAGGAGAAAGAGG
AGGGGGCGGTATTGCATCCTCTTTGTACCGGTTTAGCGTCTCTTTGCTCG
GCATGGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAGAACGAGGAA
GGGAGAGAGGAAAGGGGGAAGCAGCATTCTTCCCCTCCCTTGAACAAGAG
GGTGACGGATCCGCTGCTGCTGCCGGCGTCAAACCCCTATTTTGGGAGCA
CCGAGgtagggagggagggagggagggagggaaggagggcgggatggagg
gagggagggacgggtatgaacggtcctggccttattacttccttccttcc
tcctctcgtccctccttccctccctcagTCTCTCCTTCCATCCTACCCGG
ATTTACGCAAGCAAGCTGGCCTGGCCTGCGTCTACACCACGCCTCCTCTC
GTCTTGACACGGGCTCGGACCCCTTTCGCGCCTTGCCAGCAGCTGACGTA
CCGCTTTCGATTGGCCCTACCTGCGCACCTCCTTCCCTCCTACAATCGAG
gtaggcgttgggtttgtcatctgtttccagcttcttttttcctttttctc
tttctttttcttgtcctgttcgtcgtctcgacgcagtttggcactaactt
cctccctccctccctcccttcccagGCACAGGCGCCCGTTTCTTCTACAT
GTGTACGGTGGCCGTCGGCGGGCAAGGGCAAGAACGGCCCATGCGCTACA
TCCACATTCCCTTTACTGTCCTCTCCTCGGGCTTCATGGgtacgtcctcc
cgccctcccgccctcccgtcctccctccctccttccttccaccccgtctc
cgcctcaccgatatccattccctccctcccgccctccttccctctttccc
cccctccctcccctcctccctccagACCTCCCCATGCCCCCTTCAAATTA
CGTGGCTGTGGGTTTCCTCGAGGGGGAAGAAGTTCACTCCCGGCTAATCG
GAGAAGAAGAAAGGAGAGAGATTTACGGGGAAGgtagagaaggaaggagg
gagagagggggggagggaggaccgatagattccgtcctgtgtcaactgta
attttaaatacccccctgatttctacctccaacgacaatccgttaataaa
cagGCGGTAACGACCAGGACGAAGGCGAGCGTGGATTTTGCTGGAGGCGC
TTCTCAGCCAAGGTACGAAAAATATCCCTACCCTCCTTCCCTCCCTTCCT
CCTTCCTTCCTTGCCATTTTTCCCTCCCTCCATTCCTCCCGGCTTTGCAC
CGACTGATCCTCTCTCCCCCCCGCAGTATCTACGGAATGCCAACGAGGAG
GTCATCCCTCACAACTACCACGATGACTCTGACAATGAGGAGGAGGAGGA
ATGGAAGGATGATCGgtaagaaaagaggaagggagggaggaagggaagaa
gagagggaggaaagccgtgatatcgataggaggggagacagaagaggaga
agcagataggataattctaatattttttctttcttttcctccctccctcc
ctccctcccttcctccctccctccctccctccctctctccccacttctcc
agCAACGACGTCTACATGGCGGGGCTGACCTTCCGCCCTTCCTCCCTCCC
ACCCTCGTCCTCCCTCCCGTCCTCGCCGGCCAGAAGAGGAGGCCCTGCAT
GCACGATTTATGCTATCCGAAACGGGACCGCTAATTTAGgtttggggggc
agggaaggagggagggagggacgaggggaaaagggagccagaaagggagg
aatagacaggctcctctcttgcgtacacttactttctgctaacgatatcc
ttttatgcttccctccctccctcccttcctccctccctccctccttcctt
cccttcctcttgcgcaagGCAAGTTTGTGACGTACTCACAGGCGTATCGG
CCAGGGGCTCCATTTGATGGAGTCTTCGACTTCTCGGATGGGATCCTGCG
GTGTTACCAGgtagggataacgcgaagcagggagagagtgagggagggag
ggaggggatgcgggacgagaggccgattggttctctgtcattctgctctc
tcctaggtttctgtgcatcgagctcgagaaatatgactctatcaaggatc
tgcttgtccaatacaaattattgcgtagcacaaatattttcctttgttcc
tcctctatgtctcttcctcctcttccccccgtctgatcgcttatgcgtgt
caggtccacgaggagaggaccttgtcacactcggccggccgtcgcgcaca
cacctcggggaatacactcttttatcacttcacccttcactcttttatca
cttcaaccttctcaccccgttttctccttgccctcattcattttccagAT
ATCTGCATGCATGGTCCGCGAAGAGTGGACTTATCACGCTCAACCCGCAC
AGCGCAAGTTGTTGGCGCGCACAGTCGAAGATACTTTCCACGAACTCACT
GCATCGTGTTTGTCGTGCGCGGTCTTTCTCAAGgtacgaccagggaggct
aaccaaggtgtaatggtcatggatgggtttccaaagcagaaacagaaagt
aaagactgaggaaatagttgtcacagggtagaataatgaggggacgatgg
atacgcgtgcaatgcatgggaatagacctcgatgtcacccatttatctac
tgactcctcgttccctccccctcttaatcatacagGTCCCTATCGATGCC
TCTCCTACTTTTTCCACGCCGTTTACGTGCTTGGAATGGAAAGTGTGCTT
CGAGTTTGTCACTAGCAAGGAAGAGGACGCTCTGCGCGAAGCAGCGCTCA
TCGAAGAAGAGAAGCAGGCAAGGATCGAGGAGCTTCGCGACCTCCTACTT
TCTTCCACCTCTGACAATGAGACGGAAACGGAAGATGATACTTTGATTTT
GGAAGAGACGGAGGTCGTGGACGAAGACGAGGGAGGAGAAGGGCAACCTA
GGAAAAGTGGATGTCCCGAGACGGTGACTGCTCTCCATACCTCCAAGCTG
CGGTGGACATTTCCCATTCGCGTGATCCCGCCGAATGACACGGATCCAAC
TGACTTATTTTTGGATTATCATGTGGCTCGCTGCTCGATGGAAATGCATA
TTTAG
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protein sequence of NO27G00290.1

>NO27G00290.1-protein ID=NO27G00290.1-protein|Name=NO27G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MGGGGGGGEGGGENEEGREERGKQHSSPPLNKRVTDPLLLPASNPYFGST
ESLLPSYPDLRKQAGLACVYTTPPLVLTRARTPFAPCQQLTYRFRLALPA
HLLPSYNRGTGARFFYMCTVAVGGQGQERPMRYIHIPFTVLSSGFMDLPM
PPSNYVAVGFLEGEEVHSRLIGEEERREIYGEGGNDQDEGERGFCWRRFS
AKVRKISLPSFPPFLLPSLPFFPPSIPPGFAPTDPLSPPQYLRNANEEVI
PHNYHDDSDNEEEEEWKDDRNDVYMAGLTFRPSSLPPSSSLPSSPARRGG
PACTIYAIRNGTANLGKFVTYSQAYRPGAPFDGVFDFSDGILRCYQISAC
MVREEWTYHAQPAQRKLLARTVEDTFHELTASCLSCAVFLKVPIDASPTF
STPFTCLEWKVCFEFVTSKEEDALREAALIEEEKQARIEELRDLLLSSTS
DNETETEDDTLILEETEVVDEDEGGEGQPRKSGCPETVTALHTSKLRWTF
PIRVIPPNDTDPTDLFLDYHVARCSMEMHI*
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Synonyms
Publications