NO27G00030, NO27G00030 (gene) Nannochloropsis oceanica

Overview
NameNO27G00030
Unique NameNO27G00030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3084
Alignment locationchr27:6928..10011 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:6928..10011 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037519LITAF_fam
IPR006629LITAF
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR116ngnoR116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00030.1NO27G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G00030.2NO27G00030.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00030.1NO27G00030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G00030.2NO27G00030.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00030 ID=NO27G00030|Name=NO27G00030|organism=Nannochloropsis oceanica|type=gene|length=3084bp
TCAAGTAACTCTTTTGGACTGCCCACACAAGCCCTGGGAACAGCGGTGCA
CCTGCACAACAATGTCATAATTCACCGTGCCTACTGTTCAAAATGCTCAA
ACTTTTCTATCATTCCACTTTTTGGTGCCCCGATTATGGAAACGAAAGAC
AACTGCCCAATCTTCCGAAAAGGGAGTCGTGCGCGAATAACGCCTGGCGG
CCGGGCAATCCCATTATTTGCCAAGAATGCAGGGCCTTGCGCGCTACCTA
AGCTTATTTGTCTAATGCGCGTTAGCGGTCTTTTTGCGATGGCTCTTTTC
AAGGCCCTCAGTCACATATCCACCCTCACGTACCCACCACAAATCCCCAA
TGTCGATCATCAAGAGCATCAGAGAACATAAAGATGATGCCGGTCCTCGC
GCCAACTCGCCCCTCACCTGCTACTCCTCCGCGCTTGTAGCACCCTCCAT
TACGCCAACAAATCTCAGAAACATTCCTTCTTATCATGCATACAGACATG
GAGGGCAGGCTGCTTTTTCCATGTCTCCCAGCGCACGGCTCACTCTTCTC
CCATACATCATCTTGTCCCTCCACCCCCTCTCCTCCCCTACCCATCCTAT
TCCTCAGACCCTCCTCTCTTCTCCACTACTTCCGCCTTCATCAACATAAA
ATCATGCCTGGCGGCGGTGGTGGACCCTATCCACCTCCCAAAGTGGCCGT
TGCCCACGCGGTCGCCGAGCCCGTGCAAGCCTCCTACGACAACAACTACG
ACGAGCCCTCATTCCAACAGCACCAACGACCGTATGAgtaagcgctttgg
aagtaggcataaagtgaaggattgaatagaggaaagagaagaaaatgcct
gctttcggagaccggatgaggagactctggtcgtcagcagagggttgtgc
caaaaagcgtctttttaagagatggaaaacctattctcgtcccccctttc
ctcgtcttcctcacatgtacctcttcctctacccctccctttgacgacag
TCAGCAAGGAGGGGCCCCCATCACAGCCGAGCCGGTACCGTATGGGCAGC
AGCACTACCAACAGGGCAGGCCACAGCAGgtagggtggtagggtgggaga
taggggggagggaggatgggaggagccatgtgcttgtctgtgtctgcatg
ggcatgcccgtcggtggcattgatgtgcggcagtccttcctccctaccga
tacctcttggccttccatccctcctttcctcgtcttcctcactcctccat
gcactcacgcccccccttgtccccttcagGTCCTGGTGGCGGCTGTCAAT
CCCCGACTACCCATGCACATCCAGTGCCCTCGCTGCGGCCAGGCCGTCAC
CACCATCGTCCGCTCCCAGGTCAACGGTTGCACTTTTCTCGGgtgcgtcg
tatcgaacttttggttcatttcctcttctgacccatactgaacttgaact
ttgcttctgagagtcgttatttatctgtttgccctgattgttttctttcg
ctcgctttgctcgctgtctctctcttttttttgtgccttctagccttccc
taatatcttcgtcaagtgcattttcccatatcaattacctcgactctctc
ttttcttccctcacactgccttccccctgtctccctgtctccaaccctgc
ctcccgctcttcactgcagCTGCTTCTGCTTCCTCATGTTGGGAATGTTG
CCATGTGCTTTGCTCCCTTTCTGTATACCGTCCTGTCAGGGCGTGGTCCA
CATCTGCCCTGCTTGTAGGTACGCGATAGCCGCTAGCTAGCTCGCTACCT
GGCTCTACTCGTTTCATGCTTCGCTGGTTCCTTCCCTCCAGTGTGTGGGG
GGGGATGATCAGAAGGAGGAAGGAGGGGGGGCCGAAGATGAAGAGGAAGG
AGAAGAAGGAGAGAGAAGAGAATGGATTCAAAAGGGGGAAAGGCCAGAGA
GAGGGAAAGAGGAAAGAATTGAGGGGGGAGAGGAAGCTATATTTGCATCG
GACTGACAGTGATTAAAAAGACTCCTGAGATAATAAGAGAAAGTAAAAGA
AAAAGAAAAGAAAAAGTGGATGAACCAGAAGAAAAAGGAAGATACTTGTA
AGAGGAAAAGAGGATGGATGATGGGACTTCTTGCCCTATCTACTCGCACA
CAAGAAAGAAACTTCTTACACCTATTCCGTCCCCGTGTCTAATTTCTTCA
CAATTTCCGCTCTCTTCCACACTATATGGACCTTGCTCTTCTCGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCAACTACCACTGCTCCTTCTTCG
CTCTTGTTTATATGCTCTCGCATTTCCCGCAACGAATTAAAGGCAAAGGG
AGCACACACGGAGGAGAAGATTGTGCCCGAGCCGTCACCTCCGCCAATTG
TCTCGTCTGAGCTGATCACTTGAAACTACGCCAACCACCCGAAACATGCC
CGAACCCCCGGGCTCGAGGACAAGCTCGGACGTGCACCCTCGCTTTCACA
CAACAACCCACGAGACGACGCGCAAGACACTTGACACTTGCACGCGCCCT
TTTCCTCCTGTACAGCACCCACCCTCTCTCTCTCGTCGTGTCCACATATC
CCACACATTTAGTGTTACCTGTCGACCTTCGACCAGCTCCGCTTCCTCTT
TCTTGCTTTCCCTCCATTCTCCTCCTCCTTCTCTCCCTTCGTCCCGTCTA
GTCATACAAGTCAACTCCCCACTCCCTCACTCTCCCTTCGTCGTTCCTTT
CCTCGCTCCCTCCCTCCCTCTCGCGCCTCTATCTTAGCTTGAAGTCGTAG
AAGGGCAGGAGCTGTCGTTGTATCGTTCGAGACACCTTGGCCAGCCTTCG
ACCCACTGCAATGTGGGGCTCGTCCGCCTCGATGGGAAGGATGGTGGCGC
TGAGGGAGGGAGACAGGGAGGGAGGGAAGATTGTGAGTGCTGCAACGGAT
AGGGACTACAAAGAACGGAATGAAGTGCGCCGAGTGAGGGAAAGGGAGGA
AAGATTACGAAAAAGGAAGAAGGAAGGAAGGAGGGAGGGAGGTAAGCAGG
GAGGGAGGGAGGCAGGGAGGCAGGGAAGCAGGAA
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protein sequence of NO27G00030.1

>NO27G00030.1-protein ID=NO27G00030.1-protein|Name=NO27G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MHTDMEGRLLFPCLPAHGSLFSHTSSCPSTPSPPLPILFLRPSSLLHYFR
LHQHKIMPGGGGGPYPPPKVAVAHAVAEPVQASYDNNYDEPSFQQHQRPY
DQQGGAPITAEPVPYGQQHYQQGRPQQVLVAAVNPRLPMHIQCPRCGQAV
TTIVRSQVNGCTFLGCFCFLMLGMLPCALLPFCIPSCQGVVHICPACRYA
IAAS*
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protein sequence of NO27G00030.2

>NO27G00030.2-protein ID=NO27G00030.2-protein|Name=NO27G00030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MHTDMEGRLLFPCLPAHGSLFSHTSSCPSTPSPPLPILFLRPSSLLHYFR
LHQHKIMPGGGGGPYPPPKVAVAHAVAEPVQASYDNNYDEPSFQQHQRPY
DQQGGAPITAEPVPYGQQHYQQGRPQQVLVAAVNPRLPMHIQCPRCGQAV
TTIVRSQVNGCTFLGCVVSNFWFISSSDPY*
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Synonyms
Publications