NO27G00030.2, NO27G00030.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00030.2
Unique NameNO27G00030.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2671
Alignment locationchr27:6928..10011 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:6928..10011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00030.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00030NO27G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00030.2NO27G00030.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00030.2.cds1NO27G00030.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00030.2.cds2NO27G00030.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00030.2.cds3NO27G00030.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00030.2 ID=NO27G00030.2|Name=NO27G00030.2|organism=Nannochloropsis oceanica|type=mRNA|length=2671bp
TCAAGTAACTCTTTTGGACTGCCCACACAAGCCCTGGGAACAGCGGTGCA
CCTGCACAACAATGTCATAATTCACCGTGCCTACTGTTCAAAATGCTCAA
ACTTTTCTATCATTCCACTTTTTGGTGCCCCGATTATGGAAACGAAAGAC
AACTGCCCAATCTTCCGAAAAGGGAGTCGTGCGCGAATAACGCCTGGCGG
CCGGGCAATCCCATTATTTGCCAAGAATGCAGGGCCTTGCGCGCTACCTA
AGCTTATTTGTCTAATGCGCGTTAGCGGTCTTTTTGCGATGGCTCTTTTC
AAGGCCCTCAGTCACATATCCACCCTCACGTACCCACCACAAATCCCCAA
TGTCGATCATCAAGAGCATCAGAGAACATAAAGATGATGCCGGTCCTCGC
GCCAACTCGCCCCTCACCTGCTACTCCTCCGCGCTTGTAGCACCCTCCAT
TACGCCAACAAATCTCAGAAACATTCCTTCTTATCATGCATACAGACATG
GAGGGCAGGCTGCTTTTTCCATGTCTCCCAGCGCACGGCTCACTCTTCTC
CCATACATCATCTTGTCCCTCCACCCCCTCTCCTCCCCTACCCATCCTAT
TCCTCAGACCCTCCTCTCTTCTCCACTACTTCCGCCTTCATCAACATAAA
ATCATGCCTGGCGGCGGTGGTGGACCCTATCCACCTCCCAAAGTGGCCGT
TGCCCACGCGGTCGCCGAGCCCGTGCAAGCCTCCTACGACAACAACTACG
ACGAGCCCTCATTCCAACAGCACCAACGACCGTATGATCAGCAAGGAGGG
GCCCCCATCACAGCCGAGCCGGTACCGTATGGGCAGCAGCACTACCAACA
GGGCAGGCCACAGCAGGTCCTGGTGGCGGCTGTCAATCCCCGACTACCCA
TGCACATCCAGTGCCCTCGCTGCGGCCAGGCCGTCACCACCATCGTCCGC
TCCCAGGTCAACGGTTGCACTTTTCTCGGGTGCGTCGTATCGAACTTTTG
GTTCATTTCCTCTTCTGACCCATACTGAACTTGAACTTTGCTTCTGAGAG
TCGTTATTTATCTGTTTGCCCTGATTGTTTTCTTTCGCTCGCTTTGCTCG
CTGTCTCTCTCTTTTTTTTGTGCCTTCTAGCCTTCCCTAATATCTTCGTC
AAGTGCATTTTCCCATATCAATTACCTCGACTCTCTCTTTTCTTCCCTCA
CACTGCCTTCCCCCTGTCTCCCTGTCTCCAACCCTGCCTCCCGCTCTTCA
CTGCAGCTGCTTCTGCTTCCTCATGTTGGGAATGTTGCCATGTGCTTTGC
TCCCTTTCTGTATACCGTCCTGTCAGGGCGTGGTCCACATCTGCCCTGCT
TGTAGGTACGCGATAGCCGCTAGCTAGCTCGCTACCTGGCTCTACTCGTT
TCATGCTTCGCTGGTTCCTTCCCTCCAGTGTGTGGGGGGGGATGATCAGA
AGGAGGAAGGAGGGGGGGCCGAAGATGAAGAGGAAGGAGAAGAAGGAGAG
AGAAGAGAATGGATTCAAAAGGGGGAAAGGCCAGAGAGAGGGAAAGAGGA
AAGAATTGAGGGGGGAGAGGAAGCTATATTTGCATCGGACTGACAGTGAT
TAAAAAGACTCCTGAGATAATAAGAGAAAGTAAAAGAAAAAGAAAAGAAA
AAGTGGATGAACCAGAAGAAAAAGGAAGATACTTGTAAGAGGAAAAGAGG
ATGGATGATGGGACTTCTTGCCCTATCTACTCGCACACAAGAAAGAAACT
TCTTACACCTATTCCGTCCCCGTGTCTAATTTCTTCACAATTTCCGCTCT
CTTCCACACTATATGGACCTTGCTCTTCTCGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCAACTACCACTGCTCCTTCTTCGCTCTTGTTTATAT
GCTCTCGCATTTCCCGCAACGAATTAAAGGCAAAGGGAGCACACACGGAG
GAGAAGATTGTGCCCGAGCCGTCACCTCCGCCAATTGTCTCGTCTGAGCT
GATCACTTGAAACTACGCCAACCACCCGAAACATGCCCGAACCCCCGGGC
TCGAGGACAAGCTCGGACGTGCACCCTCGCTTTCACACAACAACCCACGA
GACGACGCGCAAGACACTTGACACTTGCACGCGCCCTTTTCCTCCTGTAC
AGCACCCACCCTCTCTCTCTCGTCGTGTCCACATATCCCACACATTTAGT
GTTACCTGTCGACCTTCGACCAGCTCCGCTTCCTCTTTCTTGCTTTCCCT
CCATTCTCCTCCTCCTTCTCTCCCTTCGTCCCGTCTAGTCATACAAGTCA
ACTCCCCACTCCCTCACTCTCCCTTCGTCGTTCCTTTCCTCGCTCCCTCC
CTCCCTCTCGCGCCTCTATCTTAGCTTGAAGTCGTAGAAGGGCAGGAGCT
GTCGTTGTATCGTTCGAGACACCTTGGCCAGCCTTCGACCCACTGCAATG
TGGGGCTCGTCCGCCTCGATGGGAAGGATGGTGGCGCTGAGGGAGGGAGA
CAGGGAGGGAGGGAAGATTGTGAGTGCTGCAACGGATAGGGACTACAAAG
AACGGAATGAAGTGCGCCGAGTGAGGGAAAGGGAGGAAAGATTACGAAAA
AGGAAGAAGGAAGGAAGGAGGGAGGGAGGTAAGCAGGGAGGGAGGGAGGC
AGGGAGGCAGGGAAGCAGGAA
back to top

protein sequence of NO27G00030.2

>NO27G00030.2-protein ID=NO27G00030.2-protein|Name=NO27G00030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MHTDMEGRLLFPCLPAHGSLFSHTSSCPSTPSPPLPILFLRPSSLLHYFR
LHQHKIMPGGGGGPYPPPKVAVAHAVAEPVQASYDNNYDEPSFQQHQRPY
DQQGGAPITAEPVPYGQQHYQQGRPQQVLVAAVNPRLPMHIQCPRCGQAV
TTIVRSQVNGCTFLGCVVSNFWFISSSDPY*
back to top

mRNA from alignment at chr27:6928..10011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00030.2 ID=NO27G00030.2|Name=NO27G00030.2|organism=Nannochloropsis oceanica|type=mRNA|length=3084bp|location=Sequence derived from alignment at chr27:6928..10011+ (Nannochloropsis oceanica)
TCAAGTAACTCTTTTGGACTGCCCACACAAGCCCTGGGAACAGCGGTGCA
CCTGCACAACAATGTCATAATTCACCGTGCCTACTGTTCAAAATGCTCAA
ACTTTTCTATCATTCCACTTTTTGGTGCCCCGATTATGGAAACGAAAGAC
AACTGCCCAATCTTCCGAAAAGGGAGTCGTGCGCGAATAACGCCTGGCGG
CCGGGCAATCCCATTATTTGCCAAGAATGCAGGGCCTTGCGCGCTACCTA
AGCTTATTTGTCTAATGCGCGTTAGCGGTCTTTTTGCGATGGCTCTTTTC
AAGGCCCTCAGTCACATATCCACCCTCACGTACCCACCACAAATCCCCAA
TGTCGATCATCAAGAGCATCAGAGAACATAAAGATGATGCCGGTCCTCGC
GCCAACTCGCCCCTCACCTGCTACTCCTCCGCGCTTGTAGCACCCTCCAT
TACGCCAACAAATCTCAGAAACATTCCTTCTTATCATGCATACAGACATG
GAGGGCAGGCTGCTTTTTCCATGTCTCCCAGCGCACGGCTCACTCTTCTC
CCATACATCATCTTGTCCCTCCACCCCCTCTCCTCCCCTACCCATCCTAT
TCCTCAGACCCTCCTCTCTTCTCCACTACTTCCGCCTTCATCAACATAAA
ATCATGCCTGGCGGCGGTGGTGGACCCTATCCACCTCCCAAAGTGGCCGT
TGCCCACGCGGTCGCCGAGCCCGTGCAAGCCTCCTACGACAACAACTACG
ACGAGCCCTCATTCCAACAGCACCAACGACCGTATGAGTAAGCGCTTTGG
AAGTAGGCATAAAGTGAAGGATTGAATAGAGGAAAGAGAAGAAAATGCCT
GCTTTCGGAGACCGGATGAGGAGACTCTGGTCGTCAGCAGAGGGTTGTGC
CAAAAAGCGTCTTTTTAAGAGATGGAAAACCTATTCTCGTCCCCCCTTTC
CTCGTCTTCCTCACATGTACCTCTTCCTCTACCCCTCCCTTTGACGACAG
TCAGCAAGGAGGGGCCCCCATCACAGCCGAGCCGGTACCGTATGGGCAGC
AGCACTACCAACAGGGCAGGCCACAGCAGGTAGGGTGGTAGGGTGGGAGA
TAGGGGGGAGGGAGGATGGGAGGAGCCATGTGCTTGTCTGTGTCTGCATG
GGCATGCCCGTCGGTGGCATTGATGTGCGGCAGTCCTTCCTCCCTACCGA
TACCTCTTGGCCTTCCATCCCTCCTTTCCTCGTCTTCCTCACTCCTCCAT
GCACTCACGCCCCCCCTTGTCCCCTTCAGGTCCTGGTGGCGGCTGTCAAT
CCCCGACTACCCATGCACATCCAGTGCCCTCGCTGCGGCCAGGCCGTCAC
CACCATCGTCCGCTCCCAGGTCAACGGTTGCACTTTTCTCGGGTGCGTCG
TATCGAACTTTTGGTTCATTTCCTCTTCTGACCCATACTGAACTTGAACT
TTGCTTCTGAGAGTCGTTATTTATCTGTTTGCCCTGATTGTTTTCTTTCG
CTCGCTTTGCTCGCTGTCTCTCTCTTTTTTTTGTGCCTTCTAGCCTTCCC
TAATATCTTCGTCAAGTGCATTTTCCCATATCAATTACCTCGACTCTCTC
TTTTCTTCCCTCACACTGCCTTCCCCCTGTCTCCCTGTCTCCAACCCTGC
CTCCCGCTCTTCACTGCAGCTGCTTCTGCTTCCTCATGTTGGGAATGTTG
CCATGTGCTTTGCTCCCTTTCTGTATACCGTCCTGTCAGGGCGTGGTCCA
CATCTGCCCTGCTTGTAGGTACGCGATAGCCGCTAGCTAGCTCGCTACCT
GGCTCTACTCGTTTCATGCTTCGCTGGTTCCTTCCCTCCAGTGTGTGGGG
GGGGATGATCAGAAGGAGGAAGGAGGGGGGGCCGAAGATGAAGAGGAAGG
AGAAGAAGGAGAGAGAAGAGAATGGATTCAAAAGGGGGAAAGGCCAGAGA
GAGGGAAAGAGGAAAGAATTGAGGGGGGAGAGGAAGCTATATTTGCATCG
GACTGACAGTGATTAAAAAGACTCCTGAGATAATAAGAGAAAGTAAAAGA
AAAAGAAAAGAAAAAGTGGATGAACCAGAAGAAAAAGGAAGATACTTGTA
AGAGGAAAAGAGGATGGATGATGGGACTTCTTGCCCTATCTACTCGCACA
CAAGAAAGAAACTTCTTACACCTATTCCGTCCCCGTGTCTAATTTCTTCA
CAATTTCCGCTCTCTTCCACACTATATGGACCTTGCTCTTCTCGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCAACTACCACTGCTCCTTCTTCG
CTCTTGTTTATATGCTCTCGCATTTCCCGCAACGAATTAAAGGCAAAGGG
AGCACACACGGAGGAGAAGATTGTGCCCGAGCCGTCACCTCCGCCAATTG
TCTCGTCTGAGCTGATCACTTGAAACTACGCCAACCACCCGAAACATGCC
CGAACCCCCGGGCTCGAGGACAAGCTCGGACGTGCACCCTCGCTTTCACA
CAACAACCCACGAGACGACGCGCAAGACACTTGACACTTGCACGCGCCCT
TTTCCTCCTGTACAGCACCCACCCTCTCTCTCTCGTCGTGTCCACATATC
CCACACATTTAGTGTTACCTGTCGACCTTCGACCAGCTCCGCTTCCTCTT
TCTTGCTTTCCCTCCATTCTCCTCCTCCTTCTCTCCCTTCGTCCCGTCTA
GTCATACAAGTCAACTCCCCACTCCCTCACTCTCCCTTCGTCGTTCCTTT
CCTCGCTCCCTCCCTCCCTCTCGCGCCTCTATCTTAGCTTGAAGTCGTAG
AAGGGCAGGAGCTGTCGTTGTATCGTTCGAGACACCTTGGCCAGCCTTCG
ACCCACTGCAATGTGGGGCTCGTCCGCCTCGATGGGAAGGATGGTGGCGC
TGAGGGAGGGAGACAGGGAGGGAGGGAAGATTGTGAGTGCTGCAACGGAT
AGGGACTACAAAGAACGGAATGAAGTGCGCCGAGTGAGGGAAAGGGAGGA
AAGATTACGAAAAAGGAAGAAGGAAGGAAGGAGGGAGGGAGGTAAGCAGG
GAGGGAGGGAGGCAGGGAGGCAGGGAAGCAGGAA
back to top

Coding sequence (CDS) from alignment at chr27:6928..10011+

>NO27G00030.2 ID=NO27G00030.2|Name=NO27G00030.2|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at chr27:6928..10011+ (Nannochloropsis oceanica)
ATGCATACAGACATGGAGGGCAGGCTGCTTTTTCCATGTCTCCCAGCGCA
CGGCTCACTCTTCTCCCATACATCATCTTGTCCCTCCACCCCCTCTCCTC
CCCTACCCATCCTATTCCTCAGACCCTCCTCTCTTCTCCACTACTTCCGC
CTTCATCAACATAAAATCATGCCTGGCGGCGGTGGTGGACCCTATCCACC
TCCCAAAGTGGCCGTTGCCCACGCGGTCGCCGAGCCCGTGCAAGCCTCCT
ACGACAACAACTACGACGAGCCCTCATTCCAACAGCACCAACGACCGTAT
GATCAGCAAGGAGGGGCCCCCATCACAGCCGAGCCGGTACCGTATGGGCA
GCAGCACTACCAACAGGGCAGGCCACAGCAGGTCCTGGTGGCGGCTGTCA
ATCCCCGACTACCCATGCACATCCAGTGCCCTCGCTGCGGCCAGGCCGTC
ACCACCATCGTCCGCTCCCAGGTCAACGGTTGCACTTTTCTCGGGTGCGT
CGTATCGAACTTTTGGTTCATTTCCTCTTCTGACCCATACTGA
back to top
Synonyms
Publications