NO25G01950, NO25G01950 (gene) Nannochloropsis oceanica

Overview
NameNO25G01950
Unique NameNO25G01950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4382
Alignment locationchr25:595273..599654 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:595273..599654 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046872metal ion binding
Homology
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BLAST of NO25G01950 vs. NCBI_GenBank
Match: EWM25735.1 (hypothetical protein Naga_100087g18 [Nannochloropsis gaditana])

HSP 1 Score: 104.0 bits (258), Expect = 1.400e-18
Identity = 70/277 (25.27%), Postives = 132/277 (47.65%), Query Frame = 0 
Query:  246 LALHVPSLEDMRLHYPRGQSTLGFIYADGEGGKYSLCLYPNGDNLSREGQLGVFVKVLALPG-GVNAVKIEGSLRIL-HAGQVVASRSFPVSTFLNASSTG--AATSSTWGFHDFCDVGEVQDSFIIEADITIKDRAKEPS------------------------LQEIPTDYSLERLLDCLKIAHGREVEAALNSRRMLNESQLRTLTLDQLLEMQENITNIIKEKRTQENECSVCQDRLKSMACVPCGHRFCSECSSKISASCPECRQHVTQKIR 495
            + L V SL ++R  +  G    G +++  E G +++ LYP GD LS  G +GV++  L+L    +  +++  +  +L   G ++ SR   ++  L     G         G+ +F       ++F +  D  +++  +E +                              + S++ LL  ++  H RE+E +  + R+L   +L  LT + LL++QEN+   + +K   +  CS+C +R K   CVPCGHR+C  C +++   C ECR+ ++QK++
Sbjct:    2 IRLRVKSLSELREKHQAGDYVSGTVFSTPE-GSFTISLYPTGDKLSNPGFIGVYLTCLSLKNPALRGIRVGATWNLLSEEGVLITSRHEKLTPILLTPDPGDDPQLGKGRGYTNFYRPPPDLETFTLTCDFVVREVVREDAGGGLGPXXXXXXXXXXXXXXXXXXXXXXXXEGSVDGLLATVRRVHERELERSRRA-RVLAVEELVELTQEDLLKLQENLAGALTKKCEMDRHCSICLERQKDHVCVPCGHRYCGPCIAQVD-RCAECRERISQKLK 275
The following BLAST results are available for this feature:
BLAST of NO25G01950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25735.11.400e-1825.27hypothetical protein Naga_100087g18 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL047nonsL047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01950.1NO25G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO25G01950.2NO25G01950.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|220891gene_8812Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01950.1NO25G01950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO25G01950.2NO25G01950.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01950 ID=NO25G01950|Name=NO25G01950|organism=Nannochloropsis oceanica|type=gene|length=4382bp
ACCGAGTGTGGAATCGAAGCCAGACGGCGAGCGGCGCATGAAATTCGGTA
CTCACTCGCTGCCTTCGCTGCACGTGTGGCTTTGAAGCGCTGCGTTTTGT
TCCTTTCAAGTGTTCGTTAGTTGCATGTGTGTCAATGTGTATGTTCGTGT
GACCTACCTCATGTATACGTAAATCCCGTTGTCCACGTGTGTAGACGCCG
CGGACTTTTTCTACCCATATGCAAGGAAACATTCCCCCGTCGTGTACTAC
ACATTGACACAAGGACTCTCAGGGGCGTATCGCCTCGGGGGAAATGCATC
TCCATAGGGCATGGATTATAATGGTGGTGTGCTTGGTCTGCGTCTTGTGA
GTCATAATAGCTGGCAATGGGTGCCTCTAGGGCATCCGCGGCTCTTCTGT
TTCATGACGCGACCCCCAACTTTTAACATGTTGCACATGACGACAACGCA
AAGGCGCCTTGGTAGTTGTGAACGACATGTCATCCTCATGCGTCCCCTAT
TTCGGTGCCTCCCTTCTCACATTGACAGACTCGTGTAGCAAAATTGTGGC
CCCGCCTTTTGCAGAACCCATCTTCTGGGTCTATATACCCTAGCCCGACC
TCATCATCGCCTCGGTCTCACCCTCCCCATCCCCCCATCCCTTCTTCTTC
ACGCCTACCACTGACAGGATTCGTCTCATAGCAATCCTCCATTGACAGCC
TTGTCTTCTAACTCTGCCGGTCCACTACGCCATCATTCACCACCAACACC
ACCACCTGCTGCTGGACCCGACGTGCGACAAAGCAACGCCAGCAAGACGT
AAAGAGGCCTCATAAGAGTGAAGAGTCGAGGAGCAGCAGCAAGGCACGAC
TGCAATCATGATAACCCTCCGTGTGGACCACTTGCCTGCCTTGATGGAGG
AACTGACTTCCAAAGGGCAGCACTGCTTCGGGAGCGTCTTGGCAGACGAG
GCCGGAAAGTGGGTGATTCAGgtgatgaatcaaggggaagcaacgggggg
aaggagagctttgcaaggacattgcatgactataaagtggactcttatgc
ccatccctctgatccccatctatccattcctcctttcctccctcccccag
CTGTACCCTCATGGCGACGCCCACGCCAAACCGGGCTTCTGCTCCATCTT
TATCAAGAACATGGTGCTGGCCAGGGGGATAGCAGCCGTGAAAATCGAAG
gttagtgagaaaatgagagatagggagggatgggggggtgagtgaacgca
ttcgcagctcttggaggtgattctatgtttgtccctgcactactttctcg
ttcaccttttcaactcgtcctcctcatgcatgtttcccactctcccgctt
ttcccttcttctttttctttaccgtgattcaccaaacacagGCAATATAC
GCATTGTCGCTGACTGCTCGGCGTCCTCCATCTCCTCCTCGTATTCCTTG
CCCCCCTCCACCTCCTCCTCCTCCCCCTCCTCCCTGTACGCTCCCACCCC
TTCCTCCCTCCCCGCTATCTCCGCTCCCTTCCCCTGCCCTCCCGCCGGTG
CTTCTGGGGCGAACAGACAAAGCCTTCCCTCCCTACCATCCTCTCCTCCT
CCTCCTCTCTCACCCGCCTCCACTACCACCTCTGTCGCCGCCGCCTCCTC
CTCGACCATCCTCCCTCCCTCCCTCTCTCCTGCCCGTCCTCCCTCCCTCC
TTCCCTCCCCCTCCCCCTCCACCTCTTCCTTCCCGAGCCTGAAAGTGACC
AAGGCCTTCGCCAAGAGTACCTGCTACATTAATCCCAACGCCGACGGACT
CGCCTCTTCCTCCTCCTGGGGCTTCCATGACTTCTGCCTGgtacgacaaa
cacctcccttcttctctccctccctcccttcctccctccctcatgtcctc
ggctacctcgactacttgccgtacccctagccctgttgccctgtaggaag
tgtcattcgaattttcacgctaactttcccccccgtcccgtccctccttg
tgcagCTCTCGGAGTTACCTTCTTCCTTCACCATCGAGGCCGAAATCACC
GTCAAGGAGGTGGCGCGTGATGACGCCCTCGCCCTGCACGTGCCCTCCCT
CGAGGACATGCGCCTGCACTACCCGCGgtacgtcgtttatccctccctcc
ctccctccctccttccttctcaccttccctccctccctcctttcagGGGC
CAGTCGACCTTGGGTTTCATCTACGCGGATGGGGAGGGAGGCAAATATTC
CCTATGCCTATATCCCAATGGCGATAATCTCTCCAGGGAAGGGCAGCTCG
GAGTCTTCGTCAAGgtacgtcccctccctccctccctccctccctccctc
cctccctccctcgccatgggacacggcctcagtcacgactgagagaaagc
tgtccgtgctttccactcaacccccgccctcccgccctccctccctccct
ccttcagGTCCTGGCCTTGCCCGGTGGTGTGAATGCCGTCAAGATCGAAG
GGAGTCTGCGGATTCTCCATGCGGGCCAAGTGGTGGCCTCCAGgtagggc
gggagggcggaagggcgggagggagggagggcgggagggagggagggagg
ggtgtgcgatgcaagacgtcaatttcaagaaaagagatgatacaccatgt
tcacttatccgtccctccctccctccctccctccctcagGTCCTTCCCCG
TTTCCACCTTTCTGAACGCCTCGAGCACAGGCGCTGCCACCAGCAGTACG
TGGGGCTTTCACGATTTCTGTGATGTGGGCGAGGTGCAGgtagggagcga
aggcgggagggagggaggggggagaaagggagggagggagggagggaagg
gtagtacagcgatttttgccctgcaaaagaatcgacgcttatccatttcc
ttcttcccccctctccttcctcctttccctttctccttccctccctcctt
ccctttctccttccctccctcccccgctagGATTCCTTTATCATCGAGGC
CGATATCACTATCAAAGATCGAGCGAAAGAGCCGAGCCTTCAGgtacctt
cccctccgtccctccttccctccctcccttccttcctcgctgttgtccac
acactcggacttttcaacttccctcttgctttaagcttcctttcttttcc
cctccctccgtccctctctccccttccccctccctcagGAGATCCCAACG
GATTATTCGCTCGAGCGATTGTTGGACTGCCTGAAGATTGCACACGGCCG
CGAGgtaggggaagggagggagggagggagggcatggatgtagttaggaa
gtgggttgaatccccgatttccccgcagccctttcgcctcgcggccagcc
tgccccgcatctccgctctttatgattctattggtcgaaaattcatattc
atcgttatcttaatcatcatattattgttgtaatcctcgacgtaatttgt
ccagtaattattttaagtcgacctacccgtcgtcattcaaggcatttcca
tgcttgtctttttcacacacccctccctccctccctccctccctccctcc
ctccctcccttcccagGTGGAAGCCGCCCTAAACTCTCGGCGGATGCTCA
ACGAAAGCCAGCTCCGCACCCTCACCCTCGACCAGCTCCTGGAGATGCAA
GAGAACATCACCAACATCATCAAGgtccctcctctatccctccctccctc
cctccctcccttccctcgcttccgtctctctaccctatttcctgtccaac
cgtacaacatcaggaccaaccgtccctccctccccttcattcctccctcc
cctcagGAGAAACGCACCCAAGAGAACGAGTGCAGTGTGTGTCAAGACCG
ACTCAAAAGCATGGCTTGTGTGCCCTGTGGCCACCGCTTCTGCTCCGAGg
tacgtcttctcccttccctccctcccttcttccctccctcccgcttttcc
tcctctcctttttcgccgcttcgccctcatcatttagctattgcattcga
ttccttcaacccctcctccctccctttctcagTGCTCGTCCAAAATCTCT
GCTTCTTGCCCCGAGTGCCGGCAGCATGTCACTCAGAAAATTCGTCTCTT
CTAGATGGAGAGCCCCTCCCTCCCTCCCTCCCTCCCTCGATCCCTCCCTT
CCTCCTTTTCCCCATACTTCCGTTCCAGGGATCGAGGAGGAAGGGAGGGA
GGGAGGGAGGGAGAGCGGGATTAAGTCGAGGGAAGATGTATGGTGTGTGT
ATGTAGGCGGAGAAAGAGGGGAAAGGAGGGGAAAGGAGGGAGAAAGAGCT
GGCGTCAAGTGAGCGATCGAAAAACCAAATGCCACCATTACAGAGAGCAT
CAACAATAAGGAACCAGAAACTGCATCATAAT
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protein sequence of NO25G01950.1

>NO25G01950.1-protein ID=NO25G01950.1-protein|Name=NO25G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MITLRVDHLPALMEELTSKGQHCFGSVLADEAGKWVIQLYPHGDAHAKPG
FCSIFIKNMVLARGIAAVKIEGNIRIVADCSASSISSSYSLPPSTSSSSP
SSLYAPTPSSLPAISAPFPCPPAGASGANRQSLPSLPSSPPPPLSPASTT
TSVAAASSSTILPPSLSPARPPSLLPSPSPSTSSFPSLKVTKAFAKSTCY
INPNADGLASSSSWGFHDFCLLSELPSSFTIEAEITVKEVARDDALALHV
PSLEDMRLHYPRGQSTLGFIYADGEGGKYSLCLYPNGDNLSREGQLGVFV
KVLALPGGVNAVKIEGSLRILHAGQVVASRSFPVSTFLNASSTGAATSST
WGFHDFCDVGEVQDSFIIEADITIKDRAKEPSLQEIPTDYSLERLLDCLK
IAHGREVEAALNSRRMLNESQLRTLTLDQLLEMQENITNIIKEKRTQENE
CSVCQDRLKSMACVPCGHRFCSECSSKISASCPECRQHVTQKIRLF*
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protein sequence of NO25G01950.2

>NO25G01950.2-protein ID=NO25G01950.2-protein|Name=NO25G01950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MITLRVDHLPALMEELTSKGQHCFGSVLADEAGKWVIQLYPHGDAHAKPG
FCSIFIKNMVLARGIAAVKIEGNIRIVADCSASSISSSYSLPPSTSSSSP
SSLYAPTPSSLPAISAPFPCPPAGASGANRQSLPSLPSSPPPPLSPASTT
TSVAAASSSTILPPSLSPARPPSLLPSPSPSTSSFPSLKVTKAFAKSTCY
INPNADGLASSSSWGFHDFCLLSELPSSFTIEAEITVKEVARDDALALHV
PSLEDMRLHYPRGQSTLGFIYADGEGGKYSLCLYPNGDNLSREGQLGVFV
KVLALPGGVNAVKIEGSLRILHAGQVVASRSFPVSTFLNASSTGAATSST
WGFHDFCDVGEVQDSFIIEADITIKDRAKEPSLQEIPTDYSLERLLDCLK
IAHGREVEAALNSRRMLNESQLRTLTLDQLLEMQENITNIIKEKRTQENE
CSVCQDRLKSMACVPCGHRFCSEVRLLPSLPPFFPPSRFSSSPFSPLRPH
HLAIAFDSFNPSSLPFSVLVQNLCFLPRVPAACHSENSSLLDGEPLPPSL
PPSIPPFLLFPILPFQGSRRKGGREGGRAGLSRGKMYGVCM*
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Synonyms
Publications