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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr25 | genome | chr25:595273..599654 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G01950.1 vs.
Match: EWM25735.1 (hypothetical protein Naga_100087g18 [Nannochloropsis gaditana]) HSP 1 Score: 102.8 bits (255), Expect = 3.100e-18 Identity = 70/277 (25.27%), Postives = 133/277 (48.01%), Query Frame = 0
Query: 246 LALHVPSLEDMRLHYPRGQSTLGFIYADGEGGKYSLCLYPNGDNLSREGQLGVFVKVLALPG-GVNAVKIEGSLRIL-HAGQVVASRSFPVSTFLNASSTG--AATSSTWGFHDFCDVGEVQDSFIIEADITIKDRAKEPSLQ------------------------EIPTDYSLERLLDCLKIAHGREVEAALNSRRMLNESQLRTLTLDQLLEMQENITNIIKEKRTQENECSVCQDRLKSMACVPCGHRFCSECSSKISASCPECRQHVTQKIR 495
+ L V SL ++R + G G +++ EG +++ LYP GD LS G +GV++ L+L + +++ + +L G ++ SR ++ L G G+ +F ++F + D +++ +E + + + S++ LL ++ H RE+E + +R +L +L LT + LL++QEN+ + +K + CS+C +R K CVPCGHR+C C +++ C ECR+ ++QK++
Sbjct: 2 IRLRVKSLSELREKHQAGDYVSGTVFSTPEGS-FTISLYPTGDKLSNPGFIGVYLTCLSLKNPALRGIRVGATWNLLSEEGVLITSRHEKLTPILLTPDPGDDPQLGKGRGYTNFYRPPPDLETFTLTCDFVVREVVREDAGGGLGPGNKGGEGGMEGGARRGGGGGALMMEGSVDGLLATVRRVHERELERSRRAR-VLAVEELVELTQEDLLKLQENLAGALTKKCEMDRHCSICLERQKDHVCVPCGHRYCGPCIAQVD-RCAECRERISQKLK 275
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G01950.1 ID=NO25G01950.1|Name=NO25G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2626bp ACCGAGTGTGGAATCGAAGCCAGACGGCGAGCGGCGCATGAAATTCGGTA CTCACTCGCTGCCTTCGCTGCACGTGTGGCTTTGAAGCGCTGCGTTTTGT TCCTTTCAAGTGTTCGTTAGTTGCATGTGTGTCAATGTGTATGTTCGTGT GACCTACCTCATGTATACGTAAATCCCGTTGTCCACGTGTGTAGACGCCG CGGACTTTTTCTACCCATATGCAAGGAAACATTCCCCCGTCGTGTACTAC ACATTGACACAAGGACTCTCAGGGGCGTATCGCCTCGGGGGAAATGCATC TCCATAGGGCATGGATTATAATGGTGGTGTGCTTGGTCTGCGTCTTGTGA GTCATAATAGCTGGCAATGGGTGCCTCTAGGGCATCCGCGGCTCTTCTGT TTCATGACGCGACCCCCAACTTTTAACATGTTGCACATGACGACAACGCA AAGGCGCCTTGGTAGTTGTGAACGACATGTCATCCTCATGCGTCCCCTAT TTCGGTGCCTCCCTTCTCACATTGACAGACTCGTGTAGCAAAATTGTGGC CCCGCCTTTTGCAGAACCCATCTTCTGGGTCTATATACCCTAGCCCGACC TCATCATCGCCTCGGTCTCACCCTCCCCATCCCCCCATCCCTTCTTCTTC ACGCCTACCACTGACAGGATTCGTCTCATAGCAATCCTCCATTGACAGCC TTGTCTTCTAACTCTGCCGGTCCACTACGCCATCATTCACCACCAACACC ACCACCTGCTGCTGGACCCGACGTGCGACAAAGCAACGCCAGCAAGACGT AAAGAGGCCTCATAAGAGTGAAGAGTCGAGGAGCAGCAGCAAGGCACGAC TGCAATCATGATAACCCTCCGTGTGGACCACTTGCCTGCCTTGATGGAGG AACTGACTTCCAAAGGGCAGCACTGCTTCGGGAGCGTCTTGGCAGACGAG GCCGGAAAGTGGGTGATTCAGCTGTACCCTCATGGCGACGCCCACGCCAA ACCGGGCTTCTGCTCCATCTTTATCAAGAACATGGTGCTGGCCAGGGGGA TAGCAGCCGTGAAAATCGAAGGCAATATACGCATTGTCGCTGACTGCTCG GCGTCCTCCATCTCCTCCTCGTATTCCTTGCCCCCCTCCACCTCCTCCTC CTCCCCCTCCTCCCTGTACGCTCCCACCCCTTCCTCCCTCCCCGCTATCT CCGCTCCCTTCCCCTGCCCTCCCGCCGGTGCTTCTGGGGCGAACAGACAA AGCCTTCCCTCCCTACCATCCTCTCCTCCTCCTCCTCTCTCACCCGCCTC CACTACCACCTCTGTCGCCGCCGCCTCCTCCTCGACCATCCTCCCTCCCT CCCTCTCTCCTGCCCGTCCTCCCTCCCTCCTTCCCTCCCCCTCCCCCTCC ACCTCTTCCTTCCCGAGCCTGAAAGTGACCAAGGCCTTCGCCAAGAGTAC CTGCTACATTAATCCCAACGCCGACGGACTCGCCTCTTCCTCCTCCTGGG GCTTCCATGACTTCTGCCTGCTCTCGGAGTTACCTTCTTCCTTCACCATC GAGGCCGAAATCACCGTCAAGGAGGTGGCGCGTGATGACGCCCTCGCCCT GCACGTGCCCTCCCTCGAGGACATGCGCCTGCACTACCCGCGGGGCCAGT CGACCTTGGGTTTCATCTACGCGGATGGGGAGGGAGGCAAATATTCCCTA TGCCTATATCCCAATGGCGATAATCTCTCCAGGGAAGGGCAGCTCGGAGT CTTCGTCAAGGTCCTGGCCTTGCCCGGTGGTGTGAATGCCGTCAAGATCG AAGGGAGTCTGCGGATTCTCCATGCGGGCCAAGTGGTGGCCTCCAGGTCC TTCCCCGTTTCCACCTTTCTGAACGCCTCGAGCACAGGCGCTGCCACCAG CAGTACGTGGGGCTTTCACGATTTCTGTGATGTGGGCGAGGTGCAGGATT CCTTTATCATCGAGGCCGATATCACTATCAAAGATCGAGCGAAAGAGCCG AGCCTTCAGGAGATCCCAACGGATTATTCGCTCGAGCGATTGTTGGACTG CCTGAAGATTGCACACGGCCGCGAGGTGGAAGCCGCCCTAAACTCTCGGC GGATGCTCAACGAAAGCCAGCTCCGCACCCTCACCCTCGACCAGCTCCTG GAGATGCAAGAGAACATCACCAACATCATCAAGGAGAAACGCACCCAAGA GAACGAGTGCAGTGTGTGTCAAGACCGACTCAAAAGCATGGCTTGTGTGC CCTGTGGCCACCGCTTCTGCTCCGAGTGCTCGTCCAAAATCTCTGCTTCT TGCCCCGAGTGCCGGCAGCATGTCACTCAGAAAATTCGTCTCTTCTAGAT GGAGAGCCCCTCCCTCCCTCCCTCCCTCCCTCGATCCCTCCCTTCCTCCT TTTCCCCATACTTCCGTTCCAGGGATCGAGGAGGAAGGGAGGGAGGGAGG GAGGGAGAGCGGGATTAAGTCGAGGGAAGATGTATGGTGTGTGTATGTAG GCGGAGAAAGAGGGGAAAGGAGGGGAAAGGAGGGAGAAAGAGCTGGCGTC AAGTGAGCGATCGAAAAACCAAATGCCACCATTACAGAGAGCATCAACAA TAAGGAACCAGAAACTGCATCATAAT back to topprotein sequence of NO25G01950.1 >NO25G01950.1-protein ID=NO25G01950.1-protein|Name=NO25G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp MITLRVDHLPALMEELTSKGQHCFGSVLADEAGKWVIQLYPHGDAHAKPG FCSIFIKNMVLARGIAAVKIEGNIRIVADCSASSISSSYSLPPSTSSSSP SSLYAPTPSSLPAISAPFPCPPAGASGANRQSLPSLPSSPPPPLSPASTT TSVAAASSSTILPPSLSPARPPSLLPSPSPSTSSFPSLKVTKAFAKSTCY INPNADGLASSSSWGFHDFCLLSELPSSFTIEAEITVKEVARDDALALHV PSLEDMRLHYPRGQSTLGFIYADGEGGKYSLCLYPNGDNLSREGQLGVFV KVLALPGGVNAVKIEGSLRILHAGQVVASRSFPVSTFLNASSTGAATSST WGFHDFCDVGEVQDSFIIEADITIKDRAKEPSLQEIPTDYSLERLLDCLK IAHGREVEAALNSRRMLNESQLRTLTLDQLLEMQENITNIIKEKRTQENE CSVCQDRLKSMACVPCGHRFCSECSSKISASCPECRQHVTQKIRLF* back to topmRNA from alignment at chr25:595273..599654+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G01950.1 ID=NO25G01950.1|Name=NO25G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=4382bp|location=Sequence derived from alignment at chr25:595273..599654+ (Nannochloropsis oceanica) ACCGAGTGTGGAATCGAAGCCAGACGGCGAGCGGCGCATGAAATTCGGTA
CTCACTCGCTGCCTTCGCTGCACGTGTGGCTTTGAAGCGCTGCGTTTTGT
TCCTTTCAAGTGTTCGTTAGTTGCATGTGTGTCAATGTGTATGTTCGTGT
GACCTACCTCATGTATACGTAAATCCCGTTGTCCACGTGTGTAGACGCCG
CGGACTTTTTCTACCCATATGCAAGGAAACATTCCCCCGTCGTGTACTAC
ACATTGACACAAGGACTCTCAGGGGCGTATCGCCTCGGGGGAAATGCATC
TCCATAGGGCATGGATTATAATGGTGGTGTGCTTGGTCTGCGTCTTGTGA
GTCATAATAGCTGGCAATGGGTGCCTCTAGGGCATCCGCGGCTCTTCTGT
TTCATGACGCGACCCCCAACTTTTAACATGTTGCACATGACGACAACGCA
AAGGCGCCTTGGTAGTTGTGAACGACATGTCATCCTCATGCGTCCCCTAT
TTCGGTGCCTCCCTTCTCACATTGACAGACTCGTGTAGCAAAATTGTGGC
CCCGCCTTTTGCAGAACCCATCTTCTGGGTCTATATACCCTAGCCCGACC
TCATCATCGCCTCGGTCTCACCCTCCCCATCCCCCCATCCCTTCTTCTTC
ACGCCTACCACTGACAGGATTCGTCTCATAGCAATCCTCCATTGACAGCC
TTGTCTTCTAACTCTGCCGGTCCACTACGCCATCATTCACCACCAACACC
ACCACCTGCTGCTGGACCCGACGTGCGACAAAGCAACGCCAGCAAGACGT
AAAGAGGCCTCATAAGAGTGAAGAGTCGAGGAGCAGCAGCAAGGCACGAC
TGCAATCATGATAACCCTCCGTGTGGACCACTTGCCTGCCTTGATGGAGG
AACTGACTTCCAAAGGGCAGCACTGCTTCGGGAGCGTCTTGGCAGACGAG
GCCGGAAAGTGGGTGATTCAGGTGATGAATCAAGGGGAAGCAACGGGGGG
AAGGAGAGCTTTGCAAGGACATTGCATGACTATAAAGTGGACTCTTATGC
CCATCCCTCTGATCCCCATCTATCCATTCCTCCTTTCCTCCCTCCCCCAG
CTGTACCCTCATGGCGACGCCCACGCCAAACCGGGCTTCTGCTCCATCTT
TATCAAGAACATGGTGCTGGCCAGGGGGATAGCAGCCGTGAAAATCGAAG
GTTAGTGAGAAAATGAGAGATAGGGAGGGATGGGGGGGTGAGTGAACGCA
TTCGCAGCTCTTGGAGGTGATTCTATGTTTGTCCCTGCACTACTTTCTCG
TTCACCTTTTCAACTCGTCCTCCTCATGCATGTTTCCCACTCTCCCGCTT
TTCCCTTCTTCTTTTTCTTTACCGTGATTCACCAAACACAGGCAATATAC
GCATTGTCGCTGACTGCTCGGCGTCCTCCATCTCCTCCTCGTATTCCTTG
CCCCCCTCCACCTCCTCCTCCTCCCCCTCCTCCCTGTACGCTCCCACCCC
TTCCTCCCTCCCCGCTATCTCCGCTCCCTTCCCCTGCCCTCCCGCCGGTG
CTTCTGGGGCGAACAGACAAAGCCTTCCCTCCCTACCATCCTCTCCTCCT
CCTCCTCTCTCACCCGCCTCCACTACCACCTCTGTCGCCGCCGCCTCCTC
CTCGACCATCCTCCCTCCCTCCCTCTCTCCTGCCCGTCCTCCCTCCCTCC
TTCCCTCCCCCTCCCCCTCCACCTCTTCCTTCCCGAGCCTGAAAGTGACC
AAGGCCTTCGCCAAGAGTACCTGCTACATTAATCCCAACGCCGACGGACT
CGCCTCTTCCTCCTCCTGGGGCTTCCATGACTTCTGCCTGGTACGACAAA
CACCTCCCTTCTTCTCTCCCTCCCTCCCTTCCTCCCTCCCTCATGTCCTC
GGCTACCTCGACTACTTGCCGTACCCCTAGCCCTGTTGCCCTGTAGGAAG
TGTCATTCGAATTTTCACGCTAACTTTCCCCCCCGTCCCGTCCCTCCTTG
TGCAGCTCTCGGAGTTACCTTCTTCCTTCACCATCGAGGCCGAAATCACC
GTCAAGGAGGTGGCGCGTGATGACGCCCTCGCCCTGCACGTGCCCTCCCT
CGAGGACATGCGCCTGCACTACCCGCGGTACGTCGTTTATCCCTCCCTCC
CTCCCTCCCTCCTTCCTTCTCACCTTCCCTCCCTCCCTCCTTTCAGGGGC
CAGTCGACCTTGGGTTTCATCTACGCGGATGGGGAGGGAGGCAAATATTC
CCTATGCCTATATCCCAATGGCGATAATCTCTCCAGGGAAGGGCAGCTCG
GAGTCTTCGTCAAGGTACGTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCGCCATGGGACACGGCCTCAGTCACGACTGAGAGAAAGC
TGTCCGTGCTTTCCACTCAACCCCCGCCCTCCCGCCCTCCCTCCCTCCCT
CCTTCAGGTCCTGGCCTTGCCCGGTGGTGTGAATGCCGTCAAGATCGAAG
GGAGTCTGCGGATTCTCCATGCGGGCCAAGTGGTGGCCTCCAGGTAGGGC
GGGAGGGCGGAAGGGCGGGAGGGAGGGAGGGCGGGAGGGAGGGAGGGAGG
GGTGTGCGATGCAAGACGTCAATTTCAAGAAAAGAGATGATACACCATGT
TCACTTATCCGTCCCTCCCTCCCTCCCTCCCTCCCTCAGGTCCTTCCCCG
TTTCCACCTTTCTGAACGCCTCGAGCACAGGCGCTGCCACCAGCAGTACG
TGGGGCTTTCACGATTTCTGTGATGTGGGCGAGGTGCAGGTAGGGAGCGA
AGGCGGGAGGGAGGGAGGGGGGAGAAAGGGAGGGAGGGAGGGAGGGAAGG
GTAGTACAGCGATTTTTGCCCTGCAAAAGAATCGACGCTTATCCATTTCC
TTCTTCCCCCCTCTCCTTCCTCCTTTCCCTTTCTCCTTCCCTCCCTCCTT
CCCTTTCTCCTTCCCTCCCTCCCCCGCTAGGATTCCTTTATCATCGAGGC
CGATATCACTATCAAAGATCGAGCGAAAGAGCCGAGCCTTCAGGTACCTT
CCCCTCCGTCCCTCCTTCCCTCCCTCCCTTCCTTCCTCGCTGTTGTCCAC
ACACTCGGACTTTTCAACTTCCCTCTTGCTTTAAGCTTCCTTTCTTTTCC
CCTCCCTCCGTCCCTCTCTCCCCTTCCCCCTCCCTCAGGAGATCCCAACG
GATTATTCGCTCGAGCGATTGTTGGACTGCCTGAAGATTGCACACGGCCG
CGAGGTAGGGGAAGGGAGGGAGGGAGGGAGGGCATGGATGTAGTTAGGAA
GTGGGTTGAATCCCCGATTTCCCCGCAGCCCTTTCGCCTCGCGGCCAGCC
TGCCCCGCATCTCCGCTCTTTATGATTCTATTGGTCGAAAATTCATATTC
ATCGTTATCTTAATCATCATATTATTGTTGTAATCCTCGACGTAATTTGT
CCAGTAATTATTTTAAGTCGACCTACCCGTCGTCATTCAAGGCATTTCCA
TGCTTGTCTTTTTCACACACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTCCCAGGTGGAAGCCGCCCTAAACTCTCGGCGGATGCTCA
ACGAAAGCCAGCTCCGCACCCTCACCCTCGACCAGCTCCTGGAGATGCAA
GAGAACATCACCAACATCATCAAGGTCCCTCCTCTATCCCTCCCTCCCTC
CCTCCCTCCCTTCCCTCGCTTCCGTCTCTCTACCCTATTTCCTGTCCAAC
CGTACAACATCAGGACCAACCGTCCCTCCCTCCCCTTCATTCCTCCCTCC
CCTCAGGAGAAACGCACCCAAGAGAACGAGTGCAGTGTGTGTCAAGACCG
ACTCAAAAGCATGGCTTGTGTGCCCTGTGGCCACCGCTTCTGCTCCGAGG
TACGTCTTCTCCCTTCCCTCCCTCCCTTCTTCCCTCCCTCCCGCTTTTCC
TCCTCTCCTTTTTCGCCGCTTCGCCCTCATCATTTAGCTATTGCATTCGA
TTCCTTCAACCCCTCCTCCCTCCCTTTCTCAGTGCTCGTCCAAAATCTCT
GCTTCTTGCCCCGAGTGCCGGCAGCATGTCACTCAGAAAATTCGTCTCTT
CTAGATGGAGAGCCCCTCCCTCCCTCCCTCCCTCCCTCGATCCCTCCCTT
CCTCCTTTTCCCCATACTTCCGTTCCAGGGATCGAGGAGGAAGGGAGGGA
GGGAGGGAGGGAGAGCGGGATTAAGTCGAGGGAAGATGTATGGTGTGTGT
ATGTAGGCGGAGAAAGAGGGGAAAGGAGGGGAAAGGAGGGAGAAAGAGCT
GGCGTCAAGTGAGCGATCGAAAAACCAAATGCCACCATTACAGAGAGCAT
CAACAATAAGGAACCAGAAACTGCATCATAAT back to topCoding sequence (CDS) from alignment at chr25:595273..599654+ >NO25G01950.1 ID=NO25G01950.1|Name=NO25G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1491bp|location=Sequence derived from alignment at chr25:595273..599654+ (Nannochloropsis oceanica) ATGATAACCCTCCGTGTGGACCACTTGCCTGCCTTGATGGAGGAACTGAC TTCCAAAGGGCAGCACTGCTTCGGGAGCGTCTTGGCAGACGAGGCCGGAA AGTGGGTGATTCAGCTGTACCCTCATGGCGACGCCCACGCCAAACCGGGC TTCTGCTCCATCTTTATCAAGAACATGGTGCTGGCCAGGGGGATAGCAGC CGTGAAAATCGAAGGCAATATACGCATTGTCGCTGACTGCTCGGCGTCCT CCATCTCCTCCTCGTATTCCTTGCCCCCCTCCACCTCCTCCTCCTCCCCC TCCTCCCTGTACGCTCCCACCCCTTCCTCCCTCCCCGCTATCTCCGCTCC CTTCCCCTGCCCTCCCGCCGGTGCTTCTGGGGCGAACAGACAAAGCCTTC CCTCCCTACCATCCTCTCCTCCTCCTCCTCTCTCACCCGCCTCCACTACC ACCTCTGTCGCCGCCGCCTCCTCCTCGACCATCCTCCCTCCCTCCCTCTC TCCTGCCCGTCCTCCCTCCCTCCTTCCCTCCCCCTCCCCCTCCACCTCTT CCTTCCCGAGCCTGAAAGTGACCAAGGCCTTCGCCAAGAGTACCTGCTAC ATTAATCCCAACGCCGACGGACTCGCCTCTTCCTCCTCCTGGGGCTTCCA TGACTTCTGCCTGCTCTCGGAGTTACCTTCTTCCTTCACCATCGAGGCCG AAATCACCGTCAAGGAGGTGGCGCGTGATGACGCCCTCGCCCTGCACGTG CCCTCCCTCGAGGACATGCGCCTGCACTACCCGCGGGGCCAGTCGACCTT GGGTTTCATCTACGCGGATGGGGAGGGAGGCAAATATTCCCTATGCCTAT ATCCCAATGGCGATAATCTCTCCAGGGAAGGGCAGCTCGGAGTCTTCGTC AAGGTCCTGGCCTTGCCCGGTGGTGTGAATGCCGTCAAGATCGAAGGGAG TCTGCGGATTCTCCATGCGGGCCAAGTGGTGGCCTCCAGGTCCTTCCCCG TTTCCACCTTTCTGAACGCCTCGAGCACAGGCGCTGCCACCAGCAGTACG TGGGGCTTTCACGATTTCTGTGATGTGGGCGAGGTGCAGGATTCCTTTAT CATCGAGGCCGATATCACTATCAAAGATCGAGCGAAAGAGCCGAGCCTTC AGGAGATCCCAACGGATTATTCGCTCGAGCGATTGTTGGACTGCCTGAAG ATTGCACACGGCCGCGAGGTGGAAGCCGCCCTAAACTCTCGGCGGATGCT CAACGAAAGCCAGCTCCGCACCCTCACCCTCGACCAGCTCCTGGAGATGC AAGAGAACATCACCAACATCATCAAGGAGAAACGCACCCAAGAGAACGAG TGCAGTGTGTGTCAAGACCGACTCAAAAGCATGGCTTGTGTGCCCTGTGG CCACCGCTTCTGCTCCGAGTGCTCGTCCAAAATCTCTGCTTCTTGCCCCG AGTGCCGGCAGCATGTCACTCAGAAAATTCGTCTCTTCTAG back to top
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