NO24G01630, NO24G01630 (gene) Nannochloropsis oceanica

Overview
NameNO24G01630
Unique NameNO24G01630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length237
Alignment locationchr24:434452..434688 +

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Properties
Property NameValue
DescriptionGlucosamine--fructose-6-phosphate aminotransferase (Isomerizing)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:434452..434688 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0097367carbohydrate derivative binding
GO:0004360glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GO:0016740transferase activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:1901135carbohydrate derivative metabolic process
GO:1901137carbohydrate derivative biosynthetic process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR001347SIS
IPR005855GlmS_trans
Homology
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: XP_005855451.1 (glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [Nannochloropsis gaditana CCMP526] >EKU20910.1 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 149.4 bits (376), Expect = 4.500e-33
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGADLIVITDNPKLARGLVPDPII+P+NGPLTALIATLPLQLLAYELA+LRGINPDKPRNLAKAVTVD
Sbjct:  618 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIVPNNGPLTALIATLPLQLLAYELAVLRGINPDKPRNLAKAVTVD 695
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: EWM24368.1 (glutamine-fructose-6-phosphate transaminase [Nannochloropsis gaditana])

HSP 1 Score: 149.4 bits (376), Expect = 4.500e-33
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGADLIVITDNPKLARGLVPDPII+P+NGPLTALIATLPLQLLAYELA+LRGINPDKPRNLAKAVTVD
Sbjct:  642 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIVPNNGPLTALIATLPLQLLAYELAVLRGINPDKPRNLAKAVTVD 719
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: XP_002182913.1 (glutamine-fructose-6-phosphate transaminase, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC45649.1 glutamine-fructose-6-phosphate transaminase, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 122.5 bits (306), Expect = 6.000e-25
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGA+LI+ITD P+LA  L P+PI+I +NGPLTAL A LPLQL+AYELA+LRGINPD PRNLAKAVTVD
Sbjct:  529 MRTAAEEVKARGAELIIITDKPRLAADLDPNPIVISNNGPLTALGAVLPLQLIAYELAMLRGINPDTPRNLAKAVTVD 606
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: EJK55383.1 (hypothetical protein THAOC_24891 [Thalassiosira oceanica])

HSP 1 Score: 122.1 bits (305), Expect = 7.800e-25
Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGAD+I+ITD   LA GL  DP++IPSNGPLTAL A LP+QLLA+ELA++RGINPD PRNLAKAVTVD
Sbjct:  534 MRTAAEEVKARGADVIIITDKKSLAEGLDDDPLVIPSNGPLTALGAVLPIQLLAFELAMMRGINPDTPRNLAKAVTVD 611
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: OEU16014.1 (putative glutamine--fructose-6-phosphate transaminase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 122.1 bits (305), Expect = 7.800e-25
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MR+AAEEVKARGA LI+ITD P LAR L  DPIIIP NGP+TAL   +PLQL+AYELA+LRGINPD PRNLAKAVTVD
Sbjct:  661 MRSAAEEVKARGAQLIIITDKPSLARDLDDDPIIIPQNGPMTALTGVIPLQLIAYELALLRGINPDTPRNLAKAVTVD 738
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: EJK73147.1 (hypothetical protein THAOC_05248 [Thalassiosira oceanica])

HSP 1 Score: 121.3 bits (303), Expect = 1.300e-24
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGAD+IVITD  +LA G+  +P++IPSNGP+TAL A LP+QL+AYELA+LRGINPD PRNLAKAVTVD
Sbjct:  380 MRTAAEEVKARGADVIVITDKEELAEGIDSNPVVIPSNGPMTALGAVLPIQLIAYELAMLRGINPDTPRNLAKAVTVD 457
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: XP_002287524.1 (hypothetical protein THAPSDRAFT_39696 [Thalassiosira pseudonana CCMP1335] >EED94967.1 hypothetical protein THAPSDRAFT_39696 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 121.3 bits (303), Expect = 1.300e-24
Identity = 60/78 (76.92%), Postives = 69/78 (88.46%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGAD+I+ITD   LA GL  DP++IPSNGPLTAL A LP+QL+A+ELA++RGINPD PRNLAKAVTVD
Sbjct:  545 MRTAAEEVKARGADVIIITDKKSLAEGLDDDPLVIPSNGPLTALGAVLPIQLMAFELAMMRGINPDTPRNLAKAVTVD 622
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: XP_002293050.1 (glutamine-fructose-6-phosphate transaminase [Thalassiosira pseudonana CCMP1335] >EED89511.1 glutamine-fructose-6-phosphate transaminase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 120.6 bits (301), Expect = 2.300e-24
Identity = 59/78 (75.64%), Postives = 70/78 (89.74%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGAD+I+ITD  +LA GL  +P++IPSNGP+TAL A LP+QL+AYELA++RGINPD PRNLAKAVTVD
Sbjct:  639 MRTAAEEVKARGADVIIITDKKELADGLDENPLVIPSNGPMTALSAVLPIQLIAYELAMMRGINPDTPRNLAKAVTVD 716
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: XP_002293055.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89516.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 120.6 bits (301), Expect = 2.300e-24
Identity = 59/78 (75.64%), Postives = 70/78 (89.74%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGAD+I+ITD  +LA GL  +P++IPSNGP+TAL A LP+QL+AYELA++RGINPD PRNLAKAVTVD
Sbjct:  515 MRTAAEEVKARGADVIIITDKKELADGLDENPLVIPSNGPMTALSAVLPIQLIAYELAMMRGINPDTPRNLAKAVTVD 592
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: GAX26644.1 (glucosamine--fructose-6-phosphate aminotransferase [Fistulifera solaris])

HSP 1 Score: 120.6 bits (301), Expect = 2.300e-24
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGA +I+ITD  +LAR L  DPIIIP+NGPLTAL A LPLQL++YELA+LRGINPD PRNLAKAVTVD
Sbjct:  616 MRTAAEEVKARGAQVIIITDKAELARDLDDDPIIIPNNGPLTALGAVLPLQLISYELAMLRGINPDTPRNLAKAVTVD 693
The following BLAST results are available for this feature:
BLAST of NO24G01630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855451.14.500e-3396.15glucosamine--fructose-6-phosphate aminotransferase... [more]
EWM24368.14.500e-3396.15glutamine-fructose-6-phosphate transaminase [Nanno... [more]
XP_002182913.16.000e-2579.49glutamine-fructose-6-phosphate transaminase, parti... [more]
EJK55383.17.800e-2578.21hypothetical protein THAOC_24891 [Thalassiosira oc... [more]
OEU16014.17.800e-2578.21putative glutamine--fructose-6-phosphate transamin... [more]
EJK73147.11.300e-2476.92hypothetical protein THAOC_05248 [Thalassiosira oc... [more]
XP_002287524.11.300e-2476.92hypothetical protein THAPSDRAFT_39696 [Thalassiosi... [more]
XP_002293050.12.300e-2475.64glutamine-fructose-6-phosphate transaminase [Thala... [more]
XP_002293055.12.300e-2475.64predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX26644.12.300e-2479.49glucosamine--fructose-6-phosphate aminotransferase... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01630.1NO24G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01630.1NO24G01630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01630 ID=NO24G01630|Name=NO24G01630|organism=Nannochloropsis oceanica|type=gene|length=237bp
ATGCGCACCGCTGCAGAGGAAGTCAAGGCCCGTGGAGCCGATTTGATTGT
TATCACGGACAACCCGAAATTGGCGCGTGGCTTGGTCCCTGACCCTATCA
TCATTCCGAGTAACGGCCCCTTAACGGCGCTGATTGCAACCCTGCCGTTG
CAGCTGTTAGCGTACGAACTGGCGATCTTGCGCGGAATTAATCCAGATAA
GCCCAGGAACCTGGCCAAGGCCGTGACAGTCGACTGA
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protein sequence of NO24G01630.1

>NO24G01630.1-protein ID=NO24G01630.1-protein|Name=NO24G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPL
QLLAYELAILRGINPDKPRNLAKAVTVD*
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Synonyms
Publications