NO24G01630.1, NO24G01630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01630.1
Unique NameNO24G01630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length237
Alignment locationchr24:434452..434688 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:434452..434688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01630.1 vs.
Match: XP_005855451.1 (glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [Nannochloropsis gaditana CCMP526]; EKU20910.1 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 149.4 bits (376), Expect = 4.500e-33
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGADLIVITDNPKLARGLVPDPII+P+NGPLTALIATLPLQLLAYELA+LRGINPDKPRNLAKAVTVD
Sbjct:  618 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIVPNNGPLTALIATLPLQLLAYELAVLRGINPDKPRNLAKAVTVD 695
The following BLAST results are available for this feature:
BLAST of NO24G01630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855451.14.500e-3396.15glucosamine--fructose-6-phosphate aminotransferase... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01630NO24G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01630.1NO24G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01630.1.cds1NO24G01630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01630.1 ID=NO24G01630.1|Name=NO24G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=237bp
ATGCGCACCGCTGCAGAGGAAGTCAAGGCCCGTGGAGCCGATTTGATTGT
TATCACGGACAACCCGAAATTGGCGCGTGGCTTGGTCCCTGACCCTATCA
TCATTCCGAGTAACGGCCCCTTAACGGCGCTGATTGCAACCCTGCCGTTG
CAGCTGTTAGCGTACGAACTGGCGATCTTGCGCGGAATTAATCCAGATAA
GCCCAGGAACCTGGCCAAGGCCGTGACAGTCGACTGA
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protein sequence of NO24G01630.1

>NO24G01630.1-protein ID=NO24G01630.1-protein|Name=NO24G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPL
QLLAYELAILRGINPDKPRNLAKAVTVD*
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mRNA from alignment at chr24:434452..434688+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01630.1 ID=NO24G01630.1|Name=NO24G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=237bp|location=Sequence derived from alignment at chr24:434452..434688+ (Nannochloropsis oceanica)
ATGCGCACCGCTGCAGAGGAAGTCAAGGCCCGTGGAGCCGATTTGATTGT
TATCACGGACAACCCGAAATTGGCGCGTGGCTTGGTCCCTGACCCTATCA
TCATTCCGAGTAACGGCCCCTTAACGGCGCTGATTGCAACCCTGCCGTTG
CAGCTGTTAGCGTACGAACTGGCGATCTTGCGCGGAATTAATCCAGATAA
GCCCAGGAACCTGGCCAAGGCCGTGACAGTCGACTGA
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Coding sequence (CDS) from alignment at chr24:434452..434688+

>NO24G01630.1 ID=NO24G01630.1|Name=NO24G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at chr24:434452..434688+ (Nannochloropsis oceanica)
ATGCGCACCGCTGCAGAGGAAGTCAAGGCCCGTGGAGCCGATTTGATTGT
TATCACGGACAACCCGAAATTGGCGCGTGGCTTGGTCCCTGACCCTATCA
TCATTCCGAGTAACGGCCCCTTAACGGCGCTGATTGCAACCCTGCCGTTG
CAGCTGTTAGCGTACGAACTGGCGATCTTGCGCGGAATTAATCCAGATAA
GCCCAGGAACCTGGCCAAGGCCGTGACAGTCGACTGA
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Synonyms
Publications