NO24G01380, NO24G01380 (gene) Nannochloropsis oceanica

Overview
NameNO24G01380
Unique NameNO24G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2168
Alignment locationchr24:372665..374832 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:372665..374832 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004843thiol-dependent ubiquitin-specific protease activity
Vocabulary: INTERPRO
TermDefinition
IPR006615Pept_C19_DUSP
Homology
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BLAST of NO24G01380 vs. NCBI_GenBank
Match: EWM24335.1 (hypothetical protein Naga_100105g9 [Nannochloropsis gaditana])

HSP 1 Score: 69.3 bits (168), Expect = 4.200e-8
Identity = 41/87 (47.13%), Postives = 50/87 (57.47%), Query Frame = 0 
Query:  445 ADEGGVSIRLFWKGEEMREGGRTLQQEGVTIDGVVYVKVGRAEEGENVLD--DLSGNLTVGGGEERGKGEVWEDPAAFGIVVDEGEG 530
            A E  VSI L W+G E+ EG  TL + GV  +GVVY +V  AEEG +V +  DL G               WEDPAAFG+VV+ GEG
Sbjct:  214 AGEDAVSISLIWEGRELSEGRMTLGEAGVRKNGVVYARVEAAEEGLSVWETADLEGG-------XXXXXXXWEDPAAFGVVVENGEG 293
The following BLAST results are available for this feature:
BLAST of NO24G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24335.14.200e-847.13hypothetical protein Naga_100105g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01380.1NO24G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01380.1NO24G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01380 ID=NO24G01380|Name=NO24G01380|organism=Nannochloropsis oceanica|type=gene|length=2168bp
GGGAGGGAGAATGGAGTGGAGTACCTTATGTCCAAGAAGTGGGAAAGTAT
GTTCAAGCGAGAGTGTGAGAGAGCGTTGAAAACTTTGAGTGGAGGAGGAG
GAGTAGGGGGGGAGGCGAAAGAAGGGGAAGAGGGAAGGGGGGAGGAGGAA
GGGGGAGGCGATGACGGCTGAGGAAGCGCTGCGGCCTCTCTTGTTCCCGG
CCGGGACAGGAGGGAAGGAAGGGAAGGAGGAGGAGAAGAATGGGAGGGAA
GGGAGAGAGGAAGGGAAAGATGGAGGGAAAGATGGAGGGATGAGGGGAGA
AAACAAGAAGGAGGAGGAACCGATTGATTTGGAGGGAGAGGACGAGGCGA
AGAAAGAGTGGCAGCAGCAGCAGCAGCAGCAGGAGACGAGAAAGACAGGC
GGAACGGACGAAGAGCACGGAGGAAAGGAAGAAGGGAAGGAAGGGAAGGA
TATGGAGGTCACGTCTTCCTCCTCCTCCTCCTCCTCCACCACCACCTCCG
TAATGGCTCCTCATCCCCCCCCCCCTCCTCCTCCTCTTCCTCCTCCTTCA
AAGACAAGGATCTCCTTGATCCCTTCATCAACGCCCGCCTTATCTGCCCC
CACGGCGGCCTCCTCCCTCCCCCTTCCACCAGAAAGCACTACCGTCTCCT
CCCTGCTTCCGCCTGGACCTTCTTCCATCGCCTCTTCCCTCGCGCCCTCC
CCCTCCTCCATGGCCCCCCCTTGCCCTACTTGCGTGGACGCCAAAATTTC
TCTCACGGAGATTAATCTGGTGAAGAGGAAAGAGAGGGATGAGTGCTTGA
ATTGCAAGGAGCTTCGGGAACTTGCCCGACGCAGCACCGCCTTCCCTCCC
TCCCTGAGGCGGGAAATCGAAGATTGGCCCCTCGGGAGAGGAGAAAGAGG
AGGAGGGGAGGAGAGGGCGAGGGAGTATGTGTTTGTGGATCGGGCCTGGT
TGGAGGGGTGGAGGGATTACGTGAGTGATTATTTGGTCAAAAAGAAGCCG
CCGGCGCCGACAAACGAGAAGGGGTTGAGgtacggggggaggaaggaagg
gagggagggagggagggagagaaggaagcatgacagcggtgtgtgtgtct
atgtatctgtgtgtgtgtgtgtgtgtgtgtgtgtgctcgtttcttgtttc
acgataggcatcatctcacgcgtcctccctccctcccttcctctctctct
ctgtccctccctccctccagGTGTCCCCACGGCCTCACCTCCCTCCCTCT
TTTCGTCATTGACCTCCTCAAGACAGGAGTGGTCGGGAAGATGGGGAAGG
GCGAGGGGGATGAGGAGGCGGATCTGGTGACTTCCCAAGAGTGGGAGAAG
CTGCTGGAAAGCTACCCTCCTGAGGAAAGAGCCGGGTGTAGGAAGGCCAC
GGCCATCTTCAAGAAAAGGTGGATCGGAGGTGGGGAGGGGGAAGCAGGGA
GGGAGGGAGGGCCAGGGACGGGGAGGGGGGAGAGTGGCTTCACGCTCGAC
GCCGAGTTCATTCCGGCGTCATGCCCGGAGTGTCAGATGCAGAAGGAAGA
AGCAAGGGAACGTGCACGGGTCTCCTTCTCTTCCCAACCCCTCAAAATCG
TCATCCTCAAGGAGGATGAACCTCTCCCCAATGCTGTCCCTCCCTCCCTC
TCCTTTTCCACGGGAACCGCAGTCACTGgtgagggggggaggcggaatgc
gcccagggccacgagggggaggggggagggaggaagggatgtgacttgcg
gataattgagggagtgagtagtgacgactcagtgggttggttgaagttac
gggtttggcaggttctgacgccagAAGAGGCGGACGAGGGAGGGGTGAGC
ATTCGCTTGTTTTGGAAGGGGGAAGAAATGCGGGAAGGAGGGAGAACGCT
GCAGCAGGAGGGGGTCACGATTGATGGAGTGGTGTACGTCAAGGTGGGGA
GGGCGGAGGAGGGGGAAAATGTCCTGGATGATTTATCGGGGAATCTGACG
GTGGGGGGTGGGGAGGAGAGAGGGAAGGGGGAGGTGTGGGAGGACCCGGC
AGCGTTTGGGATCGTGGTGGATGAGGGAGAGGGGGAGGGAAGGAAGGAGG
GGGAGGGAATGGGAAGAAGGCTTATCGACGTGAACAGGGGTTTCGAGGGA
CCTTCCTTGCGTCGCTGA
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protein sequence of NO24G01380.1

>NO24G01380.1-protein ID=NO24G01380.1-protein|Name=NO24G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MTAEEALRPLLFPAGTGGKEGKEEEKNGREGREEGKDGGKDGGMRGENKK
EEEPIDLEGEDEAKKEWQQQQQQQETRKTGGTDEEHGGKEEGKEGKDMEV
TSSSSSSSSTTTSVMAPHPPPPPPPLPPPSKTRISLIPSSTPALSAPTAA
SSLPLPPESTTVSSLLPPGPSSIASSLAPSPSSMAPPCPTCVDAKISLTE
INLVKRKERDECLNCKELRELARRSTAFPPSLRREIEDWPLGRGERGGGE
ERAREYVFVDRAWLEGWRDYVSDYLVKKKPPAPTNEKGLRCPHGLTSLPL
FVIDLLKTGVVGKMGKGEGDEEADLVTSQEWEKLLESYPPEERAGCRKAT
AIFKKRWIGGGEGEAGREGGPGTGRGESGFTLDAEFIPASCPECQMQKEE
ARERARVSFSSQPLKIVILKEDEPLPNAVPPSLSFSTGTAVTEEADEGGV
SIRLFWKGEEMREGGRTLQQEGVTIDGVVYVKVGRAEEGENVLDDLSGNL
TVGGGEERGKGEVWEDPAAFGIVVDEGEGEGRKEGEGMGRRLIDVNRGFE
GPSLRR*
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Synonyms
Publications