NO24G01380.1, NO24G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01380.1
Unique NameNO24G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1831
Alignment locationchr24:372665..374832 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:372665..374832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01380NO24G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01380.1NO24G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01380.1.cds1NO24G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01380.1.cds2NO24G01380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01380.1.cds3NO24G01380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01380.1 ID=NO24G01380.1|Name=NO24G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp
GGGAGGGAGAATGGAGTGGAGTACCTTATGTCCAAGAAGTGGGAAAGTAT
GTTCAAGCGAGAGTGTGAGAGAGCGTTGAAAACTTTGAGTGGAGGAGGAG
GAGTAGGGGGGGAGGCGAAAGAAGGGGAAGAGGGAAGGGGGGAGGAGGAA
GGGGGAGGCGATGACGGCTGAGGAAGCGCTGCGGCCTCTCTTGTTCCCGG
CCGGGACAGGAGGGAAGGAAGGGAAGGAGGAGGAGAAGAATGGGAGGGAA
GGGAGAGAGGAAGGGAAAGATGGAGGGAAAGATGGAGGGATGAGGGGAGA
AAACAAGAAGGAGGAGGAACCGATTGATTTGGAGGGAGAGGACGAGGCGA
AGAAAGAGTGGCAGCAGCAGCAGCAGCAGCAGGAGACGAGAAAGACAGGC
GGAACGGACGAAGAGCACGGAGGAAAGGAAGAAGGGAAGGAAGGGAAGGA
TATGGAGGTCACGTCTTCCTCCTCCTCCTCCTCCTCCACCACCACCTCCG
TAATGGCTCCTCATCCCCCCCCCCCTCCTCCTCCTCTTCCTCCTCCTTCA
AAGACAAGGATCTCCTTGATCCCTTCATCAACGCCCGCCTTATCTGCCCC
CACGGCGGCCTCCTCCCTCCCCCTTCCACCAGAAAGCACTACCGTCTCCT
CCCTGCTTCCGCCTGGACCTTCTTCCATCGCCTCTTCCCTCGCGCCCTCC
CCCTCCTCCATGGCCCCCCCTTGCCCTACTTGCGTGGACGCCAAAATTTC
TCTCACGGAGATTAATCTGGTGAAGAGGAAAGAGAGGGATGAGTGCTTGA
ATTGCAAGGAGCTTCGGGAACTTGCCCGACGCAGCACCGCCTTCCCTCCC
TCCCTGAGGCGGGAAATCGAAGATTGGCCCCTCGGGAGAGGAGAAAGAGG
AGGAGGGGAGGAGAGGGCGAGGGAGTATGTGTTTGTGGATCGGGCCTGGT
TGGAGGGGTGGAGGGATTACGTGAGTGATTATTTGGTCAAAAAGAAGCCG
CCGGCGCCGACAAACGAGAAGGGGTTGAGGTGTCCCCACGGCCTCACCTC
CCTCCCTCTTTTCGTCATTGACCTCCTCAAGACAGGAGTGGTCGGGAAGA
TGGGGAAGGGCGAGGGGGATGAGGAGGCGGATCTGGTGACTTCCCAAGAG
TGGGAGAAGCTGCTGGAAAGCTACCCTCCTGAGGAAAGAGCCGGGTGTAG
GAAGGCCACGGCCATCTTCAAGAAAAGGTGGATCGGAGGTGGGGAGGGGG
AAGCAGGGAGGGAGGGAGGGCCAGGGACGGGGAGGGGGGAGAGTGGCTTC
ACGCTCGACGCCGAGTTCATTCCGGCGTCATGCCCGGAGTGTCAGATGCA
GAAGGAAGAAGCAAGGGAACGTGCACGGGTCTCCTTCTCTTCCCAACCCC
TCAAAATCGTCATCCTCAAGGAGGATGAACCTCTCCCCAATGCTGTCCCT
CCCTCCCTCTCCTTTTCCACGGGAACCGCAGTCACTGAAGAGGCGGACGA
GGGAGGGGTGAGCATTCGCTTGTTTTGGAAGGGGGAAGAAATGCGGGAAG
GAGGGAGAACGCTGCAGCAGGAGGGGGTCACGATTGATGGAGTGGTGTAC
GTCAAGGTGGGGAGGGCGGAGGAGGGGGAAAATGTCCTGGATGATTTATC
GGGGAATCTGACGGTGGGGGGTGGGGAGGAGAGAGGGAAGGGGGAGGTGT
GGGAGGACCCGGCAGCGTTTGGGATCGTGGTGGATGAGGGAGAGGGGGAG
GGAAGGAAGGAGGGGGAGGGAATGGGAAGAAGGCTTATCGACGTGAACAG
GGGTTTCGAGGGACCTTCCTTGCGTCGCTGA
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protein sequence of NO24G01380.1

>NO24G01380.1-protein ID=NO24G01380.1-protein|Name=NO24G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MTAEEALRPLLFPAGTGGKEGKEEEKNGREGREEGKDGGKDGGMRGENKK
EEEPIDLEGEDEAKKEWQQQQQQQETRKTGGTDEEHGGKEEGKEGKDMEV
TSSSSSSSSTTTSVMAPHPPPPPPPLPPPSKTRISLIPSSTPALSAPTAA
SSLPLPPESTTVSSLLPPGPSSIASSLAPSPSSMAPPCPTCVDAKISLTE
INLVKRKERDECLNCKELRELARRSTAFPPSLRREIEDWPLGRGERGGGE
ERAREYVFVDRAWLEGWRDYVSDYLVKKKPPAPTNEKGLRCPHGLTSLPL
FVIDLLKTGVVGKMGKGEGDEEADLVTSQEWEKLLESYPPEERAGCRKAT
AIFKKRWIGGGEGEAGREGGPGTGRGESGFTLDAEFIPASCPECQMQKEE
ARERARVSFSSQPLKIVILKEDEPLPNAVPPSLSFSTGTAVTEEADEGGV
SIRLFWKGEEMREGGRTLQQEGVTIDGVVYVKVGRAEEGENVLDDLSGNL
TVGGGEERGKGEVWEDPAAFGIVVDEGEGEGRKEGEGMGRRLIDVNRGFE
GPSLRR*
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mRNA from alignment at chr24:372665..374832+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01380.1 ID=NO24G01380.1|Name=NO24G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp|location=Sequence derived from alignment at chr24:372665..374832+ (Nannochloropsis oceanica)
GGGAGGGAGAATGGAGTGGAGTACCTTATGTCCAAGAAGTGGGAAAGTAT
GTTCAAGCGAGAGTGTGAGAGAGCGTTGAAAACTTTGAGTGGAGGAGGAG
GAGTAGGGGGGGAGGCGAAAGAAGGGGAAGAGGGAAGGGGGGAGGAGGAA
GGGGGAGGCGATGACGGCTGAGGAAGCGCTGCGGCCTCTCTTGTTCCCGG
CCGGGACAGGAGGGAAGGAAGGGAAGGAGGAGGAGAAGAATGGGAGGGAA
GGGAGAGAGGAAGGGAAAGATGGAGGGAAAGATGGAGGGATGAGGGGAGA
AAACAAGAAGGAGGAGGAACCGATTGATTTGGAGGGAGAGGACGAGGCGA
AGAAAGAGTGGCAGCAGCAGCAGCAGCAGCAGGAGACGAGAAAGACAGGC
GGAACGGACGAAGAGCACGGAGGAAAGGAAGAAGGGAAGGAAGGGAAGGA
TATGGAGGTCACGTCTTCCTCCTCCTCCTCCTCCTCCACCACCACCTCCG
TAATGGCTCCTCATCCCCCCCCCCCTCCTCCTCCTCTTCCTCCTCCTTCA
AAGACAAGGATCTCCTTGATCCCTTCATCAACGCCCGCCTTATCTGCCCC
CACGGCGGCCTCCTCCCTCCCCCTTCCACCAGAAAGCACTACCGTCTCCT
CCCTGCTTCCGCCTGGACCTTCTTCCATCGCCTCTTCCCTCGCGCCCTCC
CCCTCCTCCATGGCCCCCCCTTGCCCTACTTGCGTGGACGCCAAAATTTC
TCTCACGGAGATTAATCTGGTGAAGAGGAAAGAGAGGGATGAGTGCTTGA
ATTGCAAGGAGCTTCGGGAACTTGCCCGACGCAGCACCGCCTTCCCTCCC
TCCCTGAGGCGGGAAATCGAAGATTGGCCCCTCGGGAGAGGAGAAAGAGG
AGGAGGGGAGGAGAGGGCGAGGGAGTATGTGTTTGTGGATCGGGCCTGGT
TGGAGGGGTGGAGGGATTACGTGAGTGATTATTTGGTCAAAAAGAAGCCG
CCGGCGCCGACAAACGAGAAGGGGTTGAGGTACGGGGGGAGGAAGGAAGG
GAGGGAGGGAGGGAGGGAGAGAAGGAAGCATGACAGCGGTGTGTGTGTCT
ATGTATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCGTTTCTTGTTTC
ACGATAGGCATCATCTCACGCGTCCTCCCTCCCTCCCTTCCTCTCTCTCT
CTGTCCCTCCCTCCCTCCAGGTGTCCCCACGGCCTCACCTCCCTCCCTCT
TTTCGTCATTGACCTCCTCAAGACAGGAGTGGTCGGGAAGATGGGGAAGG
GCGAGGGGGATGAGGAGGCGGATCTGGTGACTTCCCAAGAGTGGGAGAAG
CTGCTGGAAAGCTACCCTCCTGAGGAAAGAGCCGGGTGTAGGAAGGCCAC
GGCCATCTTCAAGAAAAGGTGGATCGGAGGTGGGGAGGGGGAAGCAGGGA
GGGAGGGAGGGCCAGGGACGGGGAGGGGGGAGAGTGGCTTCACGCTCGAC
GCCGAGTTCATTCCGGCGTCATGCCCGGAGTGTCAGATGCAGAAGGAAGA
AGCAAGGGAACGTGCACGGGTCTCCTTCTCTTCCCAACCCCTCAAAATCG
TCATCCTCAAGGAGGATGAACCTCTCCCCAATGCTGTCCCTCCCTCCCTC
TCCTTTTCCACGGGAACCGCAGTCACTGGTGAGGGGGGGAGGCGGAATGC
GCCCAGGGCCACGAGGGGGAGGGGGGAGGGAGGAAGGGATGTGACTTGCG
GATAATTGAGGGAGTGAGTAGTGACGACTCAGTGGGTTGGTTGAAGTTAC
GGGTTTGGCAGGTTCTGACGCCAGAAGAGGCGGACGAGGGAGGGGTGAGC
ATTCGCTTGTTTTGGAAGGGGGAAGAAATGCGGGAAGGAGGGAGAACGCT
GCAGCAGGAGGGGGTCACGATTGATGGAGTGGTGTACGTCAAGGTGGGGA
GGGCGGAGGAGGGGGAAAATGTCCTGGATGATTTATCGGGGAATCTGACG
GTGGGGGGTGGGGAGGAGAGAGGGAAGGGGGAGGTGTGGGAGGACCCGGC
AGCGTTTGGGATCGTGGTGGATGAGGGAGAGGGGGAGGGAAGGAAGGAGG
GGGAGGGAATGGGAAGAAGGCTTATCGACGTGAACAGGGGTTTCGAGGGA
CCTTCCTTGCGTCGCTGA
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Coding sequence (CDS) from alignment at chr24:372665..374832+

>NO24G01380.1 ID=NO24G01380.1|Name=NO24G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at chr24:372665..374832+ (Nannochloropsis oceanica)
ATGACGGCTGAGGAAGCGCTGCGGCCTCTCTTGTTCCCGGCCGGGACAGG
AGGGAAGGAAGGGAAGGAGGAGGAGAAGAATGGGAGGGAAGGGAGAGAGG
AAGGGAAAGATGGAGGGAAAGATGGAGGGATGAGGGGAGAAAACAAGAAG
GAGGAGGAACCGATTGATTTGGAGGGAGAGGACGAGGCGAAGAAAGAGTG
GCAGCAGCAGCAGCAGCAGCAGGAGACGAGAAAGACAGGCGGAACGGACG
AAGAGCACGGAGGAAAGGAAGAAGGGAAGGAAGGGAAGGATATGGAGGTC
ACGTCTTCCTCCTCCTCCTCCTCCTCCACCACCACCTCCGTAATGGCTCC
TCATCCCCCCCCCCCTCCTCCTCCTCTTCCTCCTCCTTCAAAGACAAGGA
TCTCCTTGATCCCTTCATCAACGCCCGCCTTATCTGCCCCCACGGCGGCC
TCCTCCCTCCCCCTTCCACCAGAAAGCACTACCGTCTCCTCCCTGCTTCC
GCCTGGACCTTCTTCCATCGCCTCTTCCCTCGCGCCCTCCCCCTCCTCCA
TGGCCCCCCCTTGCCCTACTTGCGTGGACGCCAAAATTTCTCTCACGGAG
ATTAATCTGGTGAAGAGGAAAGAGAGGGATGAGTGCTTGAATTGCAAGGA
GCTTCGGGAACTTGCCCGACGCAGCACCGCCTTCCCTCCCTCCCTGAGGC
GGGAAATCGAAGATTGGCCCCTCGGGAGAGGAGAAAGAGGAGGAGGGGAG
GAGAGGGCGAGGGAGTATGTGTTTGTGGATCGGGCCTGGTTGGAGGGGTG
GAGGGATTACGTGAGTGATTATTTGGTCAAAAAGAAGCCGCCGGCGCCGA
CAAACGAGAAGGGGTTGAGGTGTCCCCACGGCCTCACCTCCCTCCCTCTT
TTCGTCATTGACCTCCTCAAGACAGGAGTGGTCGGGAAGATGGGGAAGGG
CGAGGGGGATGAGGAGGCGGATCTGGTGACTTCCCAAGAGTGGGAGAAGC
TGCTGGAAAGCTACCCTCCTGAGGAAAGAGCCGGGTGTAGGAAGGCCACG
GCCATCTTCAAGAAAAGGTGGATCGGAGGTGGGGAGGGGGAAGCAGGGAG
GGAGGGAGGGCCAGGGACGGGGAGGGGGGAGAGTGGCTTCACGCTCGACG
CCGAGTTCATTCCGGCGTCATGCCCGGAGTGTCAGATGCAGAAGGAAGAA
GCAAGGGAACGTGCACGGGTCTCCTTCTCTTCCCAACCCCTCAAAATCGT
CATCCTCAAGGAGGATGAACCTCTCCCCAATGCTGTCCCTCCCTCCCTCT
CCTTTTCCACGGGAACCGCAGTCACTGAAGAGGCGGACGAGGGAGGGGTG
AGCATTCGCTTGTTTTGGAAGGGGGAAGAAATGCGGGAAGGAGGGAGAAC
GCTGCAGCAGGAGGGGGTCACGATTGATGGAGTGGTGTACGTCAAGGTGG
GGAGGGCGGAGGAGGGGGAAAATGTCCTGGATGATTTATCGGGGAATCTG
ACGGTGGGGGGTGGGGAGGAGAGAGGGAAGGGGGAGGTGTGGGAGGACCC
GGCAGCGTTTGGGATCGTGGTGGATGAGGGAGAGGGGGAGGGAAGGAAGG
AGGGGGAGGGAATGGGAAGAAGGCTTATCGACGTGAACAGGGGTTTCGAG
GGACCTTCCTTGCGTCGCTGA
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Synonyms
Publications