NO24G01190, NO24G01190 (gene) Nannochloropsis oceanica

Overview
NameNO24G01190
Unique NameNO24G01190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1345
Alignment locationchr24:325656..327000 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:325656..327000 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009890EI24
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO24G01190 vs. NCBI_GenBank
Match: KNE67451.1 (hypothetical protein AMAG_11913 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 73.9 bits (180), Expect = 3.700e-10
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 0
Query:    7 FLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTPFFVGTGAYASVFPTYILLALQSNRP 85
            F +TCWL + Y+F+Y W  +G P+A + + +E  W+Y LGFG    L SF+    VG G +A +FP +I+LA  ++ P
Sbjct:  233 FAMTCWLHALYSFEYPWTARGVPLAARLARVESAWAYHLGFGTPVTLASFFASPVVGGGTFAVLFPVFIILATLTDPP 310          
BLAST of NO24G01190 vs. NCBI_GenBank
Match: XP_016606428.1 (hypothetical protein SPPG_06094 [Spizellomyces punctatus DAOM BR117] >KNC98388.1 hypothetical protein SPPG_06094 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 73.2 bits (178), Expect = 6.300e-10
Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 0
Query:    7 FLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTPFFVGTGAYASVFPTYILLA 79
            F+  CW+ SFY+F+Y WA +G  + ++    E  W+YF+GFGF   L +F+ P F+  G +A +FP YI+++
Sbjct:  237 FICFCWIASFYSFEYKWANKGWSLKQRIDHFEEHWAYFIGFGFPCTLFTFFFPQFISQGLFALLFPMYIIMS 308          
BLAST of NO24G01190 vs. NCBI_GenBank
Match: KNE64068.1 (hypothetical protein AMAG_09125 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 73.2 bits (178), Expect = 6.300e-10
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 0
Query:    7 FLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTPFFVGTGAYASVFPTYILLALQSNRP 85
            F +TCWL + Y+F+Y W  +G P+A + + +E  W+Y LGFG    L SF+    VG G +A +FP +I+LA  ++ P
Sbjct:  298 FAMTCWLHALYSFEYPWTARGVPLAARLARVEHAWAYHLGFGTPVTLASFFATPVVGGGTFAVLFPVFIILATLTDPP 375          
BLAST of NO24G01190 vs. NCBI_GenBank
Match: XP_004996275.1 (hypothetical protein PTSG_02772 [Salpingoeca rosetta] >EGD82092.1 hypothetical protein PTSG_02772 [Salpingoeca rosetta])

HSP 1 Score: 72.0 bits (175), Expect = 1.400e-9
Identity = 27/76 (35.53%), Postives = 46/76 (60.53%), Query Frame = 0
Query:    7 FLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTPFFVGTGAYASVFPTYILLALQSN 83
            F+ +CW+ S Y F+Y W   G  + ++    E  W+YF GFGF   +++F+  FFV T  ++ +FP Y+++A  +N
Sbjct:  187 FIFSCWITSLYCFEYGWINAGWSLNKRIKFFERHWAYFFGFGFPFTIITFFWEFFVSTAVFSMLFPLYVIMATANN 262          
BLAST of NO24G01190 vs. NCBI_GenBank
Match: ORX94078.1 (EI24-domain-containing protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 70.9 bits (172), Expect = 3.100e-9
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    7 FLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTPFFVGTGAYASVFPTYILLA 79
            F   CWL+++Y+F+Y W  +G  + ++ +  E  W+YF GFGF   + SF+ P F+  G +A +FP +I++A
Sbjct:   84 FTYLCWLNAYYSFEYKWINKGWSLDQRLNYFEEHWAYFAGFGFPGTICSFFFPSFINVGVFALLFPLFIIMA 155          
BLAST of NO24G01190 vs. NCBI_GenBank
Match: KIY51021.1 (hypothetical protein FISHEDRAFT_17946, partial [Fistulina hepatica ATCC 64428])

HSP 1 Score: 70.5 bits (171), Expect = 4.100e-9
Identity = 26/76 (34.21%), Postives = 45/76 (59.21%), Query Frame = 0
Query:    7 FLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTPFFVGTGAYASVFPTYILLALQSN 83
            F+  CW+D++Y F++VW  +G  +A +   +E  W+Y+  FGF PA L  W+         A +FP YI++A+ ++
Sbjct:  172 FVFICWVDAYYCFEFVWIARGLSLASRVRHLEERWAYYFAFGFPPAALCIWSSSLANAAVSALIFPLYIIMAMSAH 247          
BLAST of NO24G01190 vs. NCBI_GenBank
Match: KIL68581.1 (hypothetical protein M378DRAFT_71289 [Amanita muscaria Koide BX008])

HSP 1 Score: 70.1 bits (170), Expect = 5.400e-9
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 0
Query:    7 FLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTPFFVGTGAYASVFPTYILLALQSN 83
            F   CW+D++Y F++VW  +G  +A++T  +E  W+YFL FG     L  W        ++A VFP YI+LA+ ++
Sbjct:  168 FTYLCWIDAYYCFEFVWVAKGMSLAKRTRHVEERWAYFLAFGLPVTALCSWGTSLTSATSFALVFPAYIILAMHAD 243          
BLAST of NO24G01190 vs. NCBI_GenBank
Match: KIM28975.1 (hypothetical protein M408DRAFT_329018 [Serendipita vermifera MAFF 305830])

HSP 1 Score: 69.3 bits (168), Expect = 9.200e-9
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 0
Query:    7 FLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTPFFVGTGAYASVFPTYILLAL 80
            FL TCW+DS+Y F++ W  QG  +A +   +E  W+YFLGFG     L            +A +FP+YI+LA+
Sbjct:  244 FLFTCWVDSYYCFEFAWQAQGLSLAARVRYLEERWAYFLGFGLPTTALCVMGSSLANAALFALIFPSYIILAM 316          
BLAST of NO24G01190 vs. NCBI_GenBank
Match: KXS12613.1 (EI24-domain-containing protein [Gonapodya prolifera JEL478])

HSP 1 Score: 69.3 bits (168), Expect = 9.200e-9
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 0
Query:   12 WLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTPFFVGTGAYASVFPTYILLA 79
            WL S Y+F+Y W  QG  V  +T  +EG W+YF GFG   AL +++ P  +G   +A VFP +I++A
Sbjct:  182 WLISLYSFEYRWNEQGWDVERRTDFVEGRWAYFAGFGLPCALATYYVPQLIGAAVFALVFPGFIIMA 248          
BLAST of NO24G01190 vs. NCBI_GenBank
Match: ORZ41503.1 (etoposide-induced protein 2.4-domain-containing protein [Catenaria anguillulae PL171])

HSP 1 Score: 68.9 bits (167), Expect = 1.200e-8
Identity = 28/78 (35.90%), Postives = 45/78 (57.69%), Query Frame = 0
Query:    7 FLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTPFFVGTGAYASVFPTYILLALQSNRP 85
            F++TCW ++ Y F+Y W ++G  +  +   IE  W Y+LGFG     L+F+    V +G +A +FP YI+ A  +  P
Sbjct:  249 FIMTCWQNAMYCFEYKWVQKGWSLEHRLRHIEDQWPYYLGFGLPTTALTFYASSVVSSGVFAVLFPLYIITATLTTPP 326          
The following BLAST results are available for this feature:
BLAST of NO24G01190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KNE67451.13.700e-1041.03hypothetical protein AMAG_11913 [Allomyces macrogy... [more]
XP_016606428.16.300e-1040.28hypothetical protein SPPG_06094 [Spizellomyces pun... [more]
KNE64068.16.300e-1041.03hypothetical protein AMAG_09125 [Allomyces macrogy... [more]
XP_004996275.11.400e-935.53hypothetical protein PTSG_02772 [Salpingoeca roset... [more]
ORX94078.13.100e-937.50EI24-domain-containing protein [Basidiobolus meris... [more]
KIY51021.14.100e-934.21hypothetical protein FISHEDRAFT_17946, partial [Fi... [more]
KIL68581.15.400e-936.84hypothetical protein M378DRAFT_71289 [Amanita musc... [more]
KIM28975.19.200e-939.73hypothetical protein M408DRAFT_329018 [Serendipita... [more]
KXS12613.19.200e-943.28EI24-domain-containing protein [Gonapodya prolifer... [more]
ORZ41503.11.200e-835.90etoposide-induced protein 2.4-domain-containing pr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01190.1NO24G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01190.1NO24G01190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01190 ID=NO24G01190|Name=NO24G01190|organism=Nannochloropsis oceanica|type=gene|length=1345bp
ATGTGTCAGTTGTGGGGGTTTCTGCTCACCTGgtagacagggagggaggg
agggagggagggagggagggagggagggagaacaagagggagagtattgt
tgtggagggtgagcttcaggaaggccctccctcccctcctctctccctcc
ctcgttctctcccttagcaggctcagatccttactgggatgctttttatt
gtgggtaggcacggcccgagcggagcactaaaatgtctgaccctcctccc
tccctccctccctccctccctccctccctcctcccccctccttccctacc
tctcccagCTGGCTGGACTCCTTCTACGCGTTTCAGTACGTATGGGCCCG
GCAAGGCCAGCCGGTGGCGGAACAGACGAGTATTATCGAGGGGGACTGgt
gagggagcaagggagtgagggagggagggaaaggagggaaggaaaggagg
gagggaggaaagggaaggagggagggaagaagggaagttaaacccatatt
tcgatattgcggcactcaccttctccctacctacctacctacctccctct
ctctctttctccctccctccctcagGTCCTACTTCCTCGGGTTTGGCTTC
CTGCCCGCCCTGCTCTCCTTCTGGACGCCTTTCTTTGTGGGCACTGGCGC
GTATGCCAGCGTGTTTCCGACGgttgggagggagggtgggagggaggagg
gagggagggagggagggagggaggagggagggagggagggagggagggag
ggaggcagggaggaagggagggatgaagggagggaggaaggaagggaagg
agggagggaggaaggaagggagggagtggtattctgccattttctccttc
tcaatggccagtgtcttgtgtgtgaatatcatccgatactagtaagagag
agggtgagggagggaaggaatgaagaagggggaaaggagggaaggaaaga
ggaggaaagggcggcgagtcaaaattacatgtatataccattgcgagctc
actcctcttcgcgctctttctctcccttcctttccccctgacttctatta
tctcaacagTACATTCTTCTCGCCTTGCAAAGCAATCGTCCTTTTCTCGT
GTCGTCAATGGGAGGGAGGGAGGGAGGAGGGTGGGGGTGGATGGAGAAGA
GGGGCCTCTGCCTTTGGGACGGGCGCCTGTCTTTTGgtcagtctagaagc
aaggagggagggggaggagaggggggagggaagaagggagtgtgtgaccg
gcgaaacaaacatcaggagggaatcaccatctacgtttatctgaccctcc
ctccccccctccctcccttcctggccagGTTCGCTCGGCGGGTAG
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protein sequence of NO24G01190.1

>NO24G01190.1-protein ID=NO24G01190.1-protein|Name=NO24G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MCQLWGFLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFL
PALLSFWTPFFVGTGAYASVFPTYILLALQSNRPFLVSSMGGREGGGWGW
MEKRGLCLWDGRLSFGSLGG*
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Synonyms
Publications