NO24G01190.1, NO24G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01190.1
Unique NameNO24G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length363
Alignment locationchr24:325656..327000 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:325656..327000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01190.1 vs.
Match: KNE67451.1 (hypothetical protein AMAG_11913 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 73.9 bits (180), Expect = 3.700e-10
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 0 
Query:    7 FLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFLPALLSFWTPFFVGTGAYASVFPTYILLALQSNRP 85
            F +TCWL + Y+F+Y W  +G P+A + + +E  W+Y LGFG    L SF+    VG G +A +FP +I+LA  ++ P
Sbjct:  233 FAMTCWLHALYSFEYPWTARGVPLAARLARVESAWAYHLGFGTPVTLASFFASPVVGGGTFAVLFPVFIILATLTDPP 310
The following BLAST results are available for this feature:
BLAST of NO24G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KNE67451.13.700e-1041.03hypothetical protein AMAG_11913 [Allomyces macrogy... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01190NO24G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01190.1NO24G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01190.1.cds1NO24G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01190.1.cds2NO24G01190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01190.1.cds3NO24G01190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01190.1.cds4NO24G01190.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01190.1.cds5NO24G01190.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01190.1 ID=NO24G01190.1|Name=NO24G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=363bp
ATGTGTCAGTTGTGGGGGTTTCTGCTCACCTGCTGGCTGGACTCCTTCTA
CGCGTTTCAGTACGTATGGGCCCGGCAAGGCCAGCCGGTGGCGGAACAGA
CGAGTATTATCGAGGGGGACTGGTCCTACTTCCTCGGGTTTGGCTTCCTG
CCCGCCCTGCTCTCCTTCTGGACGCCTTTCTTTGTGGGCACTGGCGCGTA
TGCCAGCGTGTTTCCGACGTACATTCTTCTCGCCTTGCAAAGCAATCGTC
CTTTTCTCGTGTCGTCAATGGGAGGGAGGGAGGGAGGAGGGTGGGGGTGG
ATGGAGAAGAGGGGCCTCTGCCTTTGGGACGGGCGCCTGTCTTTTGGTTC
GCTCGGCGGGTAG
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protein sequence of NO24G01190.1

>NO24G01190.1-protein ID=NO24G01190.1-protein|Name=NO24G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MCQLWGFLLTCWLDSFYAFQYVWARQGQPVAEQTSIIEGDWSYFLGFGFL
PALLSFWTPFFVGTGAYASVFPTYILLALQSNRPFLVSSMGGREGGGWGW
MEKRGLCLWDGRLSFGSLGG*
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mRNA from alignment at chr24:325656..327000+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01190.1 ID=NO24G01190.1|Name=NO24G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1345bp|location=Sequence derived from alignment at chr24:325656..327000+ (Nannochloropsis oceanica)
ATGTGTCAGTTGTGGGGGTTTCTGCTCACCTGGTAGACAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAACAAGAGGGAGAGTATTGT
TGTGGAGGGTGAGCTTCAGGAAGGCCCTCCCTCCCCTCCTCTCTCCCTCC
CTCGTTCTCTCCCTTAGCAGGCTCAGATCCTTACTGGGATGCTTTTTATT
GTGGGTAGGCACGGCCCGAGCGGAGCACTAAAATGTCTGACCCTCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCCCTCCTTCCCTACC
TCTCCCAGCTGGCTGGACTCCTTCTACGCGTTTCAGTACGTATGGGCCCG
GCAAGGCCAGCCGGTGGCGGAACAGACGAGTATTATCGAGGGGGACTGGT
GAGGGAGCAAGGGAGTGAGGGAGGGAGGGAAAGGAGGGAAGGAAAGGAGG
GAGGGAGGAAAGGGAAGGAGGGAGGGAAGAAGGGAAGTTAAACCCATATT
TCGATATTGCGGCACTCACCTTCTCCCTACCTACCTACCTACCTCCCTCT
CTCTCTTTCTCCCTCCCTCCCTCAGGTCCTACTTCCTCGGGTTTGGCTTC
CTGCCCGCCCTGCTCTCCTTCTGGACGCCTTTCTTTGTGGGCACTGGCGC
GTATGCCAGCGTGTTTCCGACGGTTGGGAGGGAGGGTGGGAGGGAGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGCAGGGAGGAAGGGAGGGATGAAGGGAGGGAGGAAGGAAGGGAAGG
AGGGAGGGAGGAAGGAAGGGAGGGAGTGGTATTCTGCCATTTTCTCCTTC
TCAATGGCCAGTGTCTTGTGTGTGAATATCATCCGATACTAGTAAGAGAG
AGGGTGAGGGAGGGAAGGAATGAAGAAGGGGGAAAGGAGGGAAGGAAAGA
GGAGGAAAGGGCGGCGAGTCAAAATTACATGTATATACCATTGCGAGCTC
ACTCCTCTTCGCGCTCTTTCTCTCCCTTCCTTTCCCCCTGACTTCTATTA
TCTCAACAGTACATTCTTCTCGCCTTGCAAAGCAATCGTCCTTTTCTCGT
GTCGTCAATGGGAGGGAGGGAGGGAGGAGGGTGGGGGTGGATGGAGAAGA
GGGGCCTCTGCCTTTGGGACGGGCGCCTGTCTTTTGGTCAGTCTAGAAGC
AAGGAGGGAGGGGGAGGAGAGGGGGGAGGGAAGAAGGGAGTGTGTGACCG
GCGAAACAAACATCAGGAGGGAATCACCATCTACGTTTATCTGACCCTCC
CTCCCCCCCTCCCTCCCTTCCTGGCCAGGTTCGCTCGGCGGGTAG
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Coding sequence (CDS) from alignment at chr24:325656..327000+

>NO24G01190.1 ID=NO24G01190.1|Name=NO24G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=363bp|location=Sequence derived from alignment at chr24:325656..327000+ (Nannochloropsis oceanica)
ATGTGTCAGTTGTGGGGGTTTCTGCTCACCTGCTGGCTGGACTCCTTCTA
CGCGTTTCAGTACGTATGGGCCCGGCAAGGCCAGCCGGTGGCGGAACAGA
CGAGTATTATCGAGGGGGACTGGTCCTACTTCCTCGGGTTTGGCTTCCTG
CCCGCCCTGCTCTCCTTCTGGACGCCTTTCTTTGTGGGCACTGGCGCGTA
TGCCAGCGTGTTTCCGACGTACATTCTTCTCGCCTTGCAAAGCAATCGTC
CTTTTCTCGTGTCGTCAATGGGAGGGAGGGAGGGAGGAGGGTGGGGGTGG
ATGGAGAAGAGGGGCCTCTGCCTTTGGGACGGGCGCCTGTCTTTTGGTTC
GCTCGGCGGGTAG
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Synonyms
Publications