NO24G01050, NO24G01050 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G01050 vs. NCBI_GenBank
Match: WP_016523258.1 (YebC/PmpR family DNA-binding transcriptional regulator [Treponema medium] >EPF28615.1 YebC/PmpR family DNA-binding regulatory protein [Treponema medium ATCC 700293]) HSP 1 Score: 190.3 bits (482), Expect = 8.000e-45 Identity = 112/267 (41.95%), Postives = 156/267 (58.43%), Query Frame = 0 Query: 3 MSGHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGD-TSDIRLAAAISKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIIIEALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREKGRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLEERGWRPSLVQFAYVPTTWVEXXXXXXXXXXXXXXXVAVVSPGQQLLTLLEALEEDPDVQNVFHN 269 MSGHSKW+ IK AKG+ DAKR +FTK E++ A+R GD + RL AI KA+A N+PKDNIE AIK+G G + E + YEG PG A+++E LTDN+ R A NVR+ FSKNGG LG++GSVA+MF R+G++E E EE L+++ALEAGAED+ + E + V +P A V + L+E+G+ + + VP T++ +++L ++E LEED DVQNV+ N Sbjct: 1 MSGHSKWATIKHAKGAADAKRGQMFTKFIKEISIAARMGGGDPNGNPRLRTAILKARAANMPKDNIERAIKKGTGELGGASYEELLYEGYAPGGVAVLVEVLTDNKNRAAANVRNLFSKNGGNLGATGSVAYMFNRKGVIEYDAE----AVSEEKLMEEALEAGAEDI-----------QTEGGIITVTTDPNDFASVLEALQEKGFESVSAEISMVPATYMSLEAETI----------------RKVLKMVERLEEDDDVQNVYTN 236
BLAST of NO24G01050 vs. NCBI_GenBank
Match: WP_009656683.1 (YebC/PmpR family DNA-binding transcriptional regulator [Selenomonas sp. FOBRC6] >EJO21343.1 DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp. FOBRC6]) HSP 1 Score: 189.9 bits (481), Expect = 1.000e-44 Identity = 113/267 (42.32%), Postives = 153/267 (57.30%), Query Frame = 0 Query: 3 MSGHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGD-TSDIRLAAAISKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIIIEALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREKGRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLEERGWRPSLVQFAYVPTTWVEXXXXXXXXXXXXXXXVAVVSPGQQLLTLLEALEEDPDVQNVFHN 269 MSGHSKW+ IKR KG+NDA R + TK+ E+T A R GD T ++RL A+SKAKANN+PKDNI AI++G+ +N E V YEG GPG TA++++ LTDNR RTA +VRH FSK GG LG G VAWMF ++ + + RE E+ALL+ LEAGAED+ + + V + EP A + L E+G + + VP T V +++ TL++ALE++ DVQNV+ N Sbjct: 1 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANNIPKDNINRAIQKGLGATEGSNYEEVLYEGYGPGGTAVMLDILTDNRNRTAADVRHLFSKYGGNLGQDGCVAWMFKKKAVFIVE---REAFDDEDALLEIVLEAGAEDMRAEDD-----------VFEIIAEPEAFEAIETVLGEKGIETASAEVTMVPDTTVHLAD----------------KDAEKMQTLIDALEDNDDVQNVYSN 237
BLAST of NO24G01050 vs. NCBI_GenBank
Match: WP_011564299.1 (YebC/PmpR family DNA-binding transcriptional regulator [Rubrobacter xylanophilus] >Q1AWE6.1 RecName: Full=Probable transcriptional regulatory protein Rxyl_1318 >ABG04282.1 protein of unknown function DUF28 [Rubrobacter xylanophilus DSM 9941]) HSP 1 Score: 189.9 bits (481), Expect = 1.000e-44 Identity = 120/268 (44.78%), Postives = 158/268 (58.96%), Query Frame = 0 Query: 3 MSGHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGD-TSDIRLAAAISKAKANNVPKDNIEGAIKRGV-EGKGSTNMEAVTYEGIGPGSTAIIIEALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREKGRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLEERGWRPSLVQFAYVPTTWVEXXXXXXXXXXXXXXXVAVVSPGQQLLTLLEALEEDPDVQNVFHN 269 MSGHSKWS IKR KG+ DAKR LF KL+ +T A+R+ GD ++ LA A+ KAK N+P DNI+ AI RG G + + E +TYEG PG A+++E LTDNR R A ++R+ FSK+GG LG+SGSVA++F R+G+V +P + GEE L++ ALEAGAEDVE D + W RV EP VR+GLEE G R Q + P V+ S +Q L L++ALEE+ DVQ V+ N Sbjct: 1 MSGHSKWSTIKRKKGAMDAKRGALFAKLSRAITVAAREGGGDPEANPALALAVQKAKDANMPNDNIQRAIDRGTGAGSEAGDYEHITYEGYAPGGVAVMVEVLTDNRNRAASDIRYIFSKHGGKLGTSGSVAYLFERKGVVLVPAD----AVGEEELMEAALEAGAEDVELD-GDHW----------RVTTEPSEFMAVRQGLEEAGIRYESAQLSMEPMNTVKLD----------------ASTARQTLRLIDALEENDDVQEVYAN 237
BLAST of NO24G01050 vs. NCBI_GenBank
Match: WP_044013307.1 (YebC/PmpR family DNA-binding transcriptional regulator [Treponema sp. OMZ 838] >AIW88673.1 transcriptional regulator [Treponema sp. OMZ 838]) HSP 1 Score: 189.5 bits (480), Expect = 1.400e-44 Identity = 112/267 (41.95%), Postives = 156/267 (58.43%), Query Frame = 0 Query: 3 MSGHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGD-TSDIRLAAAISKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIIIEALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREKGRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLEERGWRPSLVQFAYVPTTWVEXXXXXXXXXXXXXXXVAVVSPGQQLLTLLEALEEDPDVQNVFHN 269 MSGHSKW+ IK AKG+ DAKR +FTK E++ A+R GD + RL AI KA+A N+PKDNIE AIK+G G + E + YEG PG A+++E LTDN+ R A NVR+ FSKNGG LG++GSVA+MF R+G++E E EE L+++ALEAGAED++ D + V +P A V + L+E+G+ + + VP T++ +++L ++E LEED DVQNV+ N Sbjct: 1 MSGHSKWATIKHAKGAADAKRGQMFTKFIKEISIAARMGGGDPNGNPRLRTAILKARAANMPKDNIERAIKKGTGELGGASYEELLYEGYAPGGVAVLVEVLTDNKNRAAANVRNLFSKNGGNLGATGSVAYMFNRKGVIEYDAE----VVSEEKLMEEALEAGAEDIQAD-----------GGIITVTTDPNDFASVLEALQEKGFESVSAEVSMVPATYMSLEAETI----------------RKVLKMVERLEEDDDVQNVYTN 236
BLAST of NO24G01050 vs. NCBI_GenBank
Match: EGK14637.1 (glucose-1-phosphate adenylyltransferase [Desmospora sp. 8437]) HSP 1 Score: 189.1 bits (479), Expect = 1.800e-44 Identity = 117/270 (43.33%), Postives = 152/270 (56.30%), Query Frame = 0 Query: 3 MSGHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGD-TSDIRLAAAISKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIIIEALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREKGRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLEERGWRPSLVQFAYVPTTWVEXXXXXXXXXXXXXXXVAVVSPGQQLLTLLEALEEDPDVQNVFHNARL 272 M+GHSKW I+ KG DA R LF KLA E++ A+R+ GD + RL AISKA++ N+P DNIE AI RG +G +N EAVTYEG GPG A++ EALTDNR RTA +VRH FSK GG++G +G VAWMF ++GL+ I RE G+ E+ ++ LEAGAED +E ED +T P V+ LE G+ S + VP V Q+L LLEALE+ D+QNV+ N + Sbjct: 27 MAGHSKWKNIQHRKGRQDALRGKLFAKLAREISVAAREGGGDPDQNQRLRLAISKARSQNMPNDNIERAIHRGTGAEGGSNYEAVTYEGYGPGGAAVMAEALTDNRNRTAADVRHIFSKRGGSMGEAGCVAWMFDKKGLLRI---DREAGQDEDEMMLQVLEAGAED--------FEASEDAFEIT---TSPDQFEEVKASLEGEGFHFSTAEVTMVPQNTVTLTGDQV----------------TQMLQLLEALEDHDDIQNVYANVEI 266
BLAST of NO24G01050 vs. NCBI_GenBank
Match: WP_040387103.1 (MULTISPECIES: YebC/PmpR family DNA-binding transcriptional regulator [Thermoactinomycetaceae] >SIS81532.1 DNA-binding regulatory protein, YebC/PmpR family [Kroppenstedtia eburnea]) HSP 1 Score: 189.1 bits (479), Expect = 1.800e-44 Identity = 117/270 (43.33%), Postives = 152/270 (56.30%), Query Frame = 0 Query: 3 MSGHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGD-TSDIRLAAAISKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIIIEALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREKGRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLEERGWRPSLVQFAYVPTTWVEXXXXXXXXXXXXXXXVAVVSPGQQLLTLLEALEEDPDVQNVFHNARL 272 M+GHSKW I+ KG DA R LF KLA E++ A+R+ GD + RL AISKA++ N+P DNIE AI RG +G +N EAVTYEG GPG A++ EALTDNR RTA +VRH FSK GG++G +G VAWMF ++GL+ I RE G+ E+ ++ LEAGAED +E ED +T P V+ LE G+ S + VP V Q+L LLEALE+ D+QNV+ N + Sbjct: 1 MAGHSKWKNIQHRKGRQDALRGKLFAKLAREISVAAREGGGDPDQNQRLRLAISKARSQNMPNDNIERAIHRGTGAEGGSNYEAVTYEGYGPGGAAVMAEALTDNRNRTAADVRHIFSKRGGSMGEAGCVAWMFDKKGLLRI---DREAGQDEDEMMLQVLEAGAED--------FEASEDAFEIT---TSPDQFEEVKASLEGEGFHFSTAEVTMVPQNTVTLTGDQV----------------TQMLQLLEALEDHDDIQNVYANVEI 240
BLAST of NO24G01050 vs. NCBI_GenBank
Match: WP_069180476.1 (YebC/PmpR family DNA-binding transcriptional regulator [Selenomonas sp. oral taxon 920] >AOH47877.1 transcriptional regulator [Selenomonas sp. oral taxon 920]) HSP 1 Score: 189.1 bits (479), Expect = 1.800e-44 Identity = 112/267 (41.95%), Postives = 154/267 (57.68%), Query Frame = 0 Query: 3 MSGHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGD-TSDIRLAAAISKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIIIEALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREKGRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLEERGWRPSLVQFAYVPTTWVEXXXXXXXXXXXXXXXVAVVSPGQQLLTLLEALEEDPDVQNVFHN 269 MSGHSKW+ IKR KG+NDA R + TK+ E+T A R GD T ++RL A+SKAKANN+PKDNI AI++G+ +N E + YEG GPG TA++++ LTDNR RTA +VRH FSK GG LG G VAWMF ++ + + RE E+ALL+ LEAGAED+ + + V + EP A + + L E+G + + VP T V +++ TL++ALE++ DVQNV+ N Sbjct: 1 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANNIPKDNINRAIQKGLGATEGSNYEELFYEGYGPGGTAVMLDILTDNRNRTAADVRHLFSKYGGNLGQDGCVAWMFKKKAVFIVE---REAFDDEDALLEIVLEAGAEDMRAEDD-----------VFEIVAEPEAFEAIEEVLGEKGIETASAEVTMVPDTTVRLAD----------------KDAEKMQTLIDALEDNDDVQNVYSN 237
BLAST of NO24G01050 vs. NCBI_GenBank
Match: OWZ17719.1 (Transcriptional regulator [Phytophthora megakarya]) HSP 1 Score: 189.1 bits (479), Expect = 1.800e-44 Identity = 110/262 (41.98%), Postives = 153/262 (58.40%), Query Frame = 0 Query: 12 IKRAKGSNDAKRAILFTKLAVELTEASRQAKGDTSDIRLAAAISKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIIIEALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGL--VEIPEEGREKGRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLEERGWRPSLVQFAYVPTTWVEXXXXXXXXXXXXXXXVAVVSPGQQLLT---LLEALEEDPDVQNVFHN 269 I+ K + DAKR KLA E+ S+ GD +++RL AA++KAKA N+PKD IE AIKRGV+GK +N EAV YE GP +A++IE LTDN++RTAP +RH K+ G LG++G+VAWMF R+G +E+PE+G E+ +++ ALEAGA+DV E EG + +V C+P LA VRKG E G P++ + Y P +++ G Q T L++AL ED DV + HN Sbjct: 7 IQGKKNATDAKRTATNAKLAREIMVISKSVGGDANNVRLVAAVNKAKAANMPKDKIEAAIKRGVDGKDGSNAEAVLYEATGPAGSALMIETLTDNKRRTAPALRHILGKHNGALGTNGAVAWMFERKGYLEIELPEDGNMPAMDEDTVMEIALEAGADDV------EMREG-----LAQVTCDPSELASVRKGFTEAGLEPAISELIYNPKEFLDL-------------------DGDQRETFDKLVDALNEDEDVNQIHHN 238
BLAST of NO24G01050 vs. NCBI_GenBank
Match: WP_004869364.1 (YebC/PmpR family DNA-binding transcriptional regulator [Acidithiobacillus caldus] >AEK59440.1 conserved hypothetical protein [Acidithiobacillus caldus SM-1] >AIA56483.1 hypothetical protein YebC [Acidithiobacillus caldus ATCC 51756] >OFC35709.1 transcriptional regulator [Acidithiobacillus caldus] >OFC40085.1 transcriptional regulator [Acidithiobacillus caldus] >OFC40817.1 transcriptional regulator [Acidithiobacillus caldus] >OFC54736.1 transcriptional regulator [Acidithiobacillus caldus] >AUW33806.1 YebC/PmpR family DNA-binding transcriptional regulator [Acidithiobacillus caldus]) HSP 1 Score: 188.3 bits (477), Expect = 3.100e-44 Identity = 116/270 (42.96%), Postives = 155/270 (57.41%), Query Frame = 0 Query: 3 MSGHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGD-TSDIRLAAAISKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIIIEALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREKGRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLEERGWRPSLVQFAYVPTTWVEXXXXXXXXXXXXXXXVAVVSPGQQLLTLLEALEEDPDVQNVFHNARL 272 M+GHSKW+ IK K + DAK+ +FT+L E+T A+R GD +S+ RL A+ KA ANN+ KD +E AIKRG + E VTYEG GP AI+IE +TDNR RT +RH FSK GG LG+SGSVA++F RRG++ + + GE+ +L+ ALEAGAEDV ++ R+ VY E AL GV + L+ G P ++ +P T VE +L+ LLEALEE+ DVQNV+ N L Sbjct: 1 MAGHSKWANIKFRKAAQDAKKGKIFTRLIREITVAARAGGGDASSNPRLRTALDKAYANNMAKDTVERAIKRGTGELEGVDYEEVTYEGYGPSGVAILIETMTDNRVRTVAEIRHIFSKRGGNLGTSGSVAYLFQRRGMISLAAD-----VGEDRVLEAALEAGAEDVV----------TEDGRIV-VYTEATALHGVAEALQNAGLTPEEIELTMIPETTVEVSG----------------DDADKLMRLLEALEENDDVQNVYANYSL 238
BLAST of NO24G01050 vs. NCBI_GenBank
Match: WP_002698872.1 (YebC/PmpR family DNA-binding transcriptional regulator [Treponema phagedenis] >EFW37710.1 DNA-binding regulatory protein, YebC/PmpR family [Treponema phagedenis F0421]) HSP 1 Score: 188.3 bits (477), Expect = 3.100e-44 Identity = 112/267 (41.95%), Postives = 156/267 (58.43%), Query Frame = 0 Query: 3 MSGHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGD-TSDIRLAAAISKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIIIEALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREKGRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLEERGWRPSLVQFAYVPTTWVEXXXXXXXXXXXXXXXVAVVSPGQQLLTLLEALEEDPDVQNVFHN 269 MSGHSKW+ IK AKG+ DAKR +FTK E++ A+R GD ++ RL AI KA+A N+PKDNIE AIK+G G +N E + YEG PG AI++E LTDN+ R A NVR+ FSKNGG LGS+GSVA+MF R+G++E E EEA++D ALEAGAED+ ++E + V +P V + L+ +G + + VP T++ +++L +++ +EED DVQNV+ N Sbjct: 1 MSGHSKWATIKHAKGAADAKRGQMFTKFIKEISIAARMGGGDPAANPRLRTAILKARAANMPKDNIERAIKKGTGELGGSNYEELIYEGYAPGGVAILVEVLTDNKNRAAANVRNLFSKNGGNLGSTGSVAYMFNRKGVIEYDAE----VASEEAVMDAALEAGAEDI-----------QNEGGIITVTTDPNDFETVLEALQTKGLESVSAEISMVPDTYMSLD----------------AETTRKVLKMIDRIEEDDDVQNVYSN 236 The following BLAST results are available for this feature:
BLAST of NO24G01050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G01050 ID=NO24G01050|Name=NO24G01050|organism=Nannochloropsis oceanica|type=gene|length=1072bpback to top protein sequence of NO24G01050.1 >NO24G01050.1-protein ID=NO24G01050.1-protein|Name=NO24G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bpback to top Synonyms
Publications
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