NO24G01050.1, NO24G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01050.1
Unique NameNO24G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length819
Alignment locationchr24:292309..293380 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:292309..293380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01050.1 vs.
Match: WP_098503696.1 (YebC/PmpR family DNA-binding transcriptional regulator [Thermoflexus hugenholtzii]; PFG74301.1 YebC/PmpR family DNA-binding regulatory protein [Thermoflexus hugenholtzii])

HSP 1 Score: 195.3 bits (495), Expect = 2.500e-46
Identity = 120/268 (44.78%), Postives = 160/268 (59.70%), Query Frame = 0 
Query:    3 MSGHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGDTS-DIRLAAAISKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIIIEALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREKGRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLEERGWRPSLVQFAYVPTTWVEVEVEEEEGKEREKGKVAVVSPGQQLLTLLEALEEDPDVQNVFHNA 270
            M+GHSKW++IKR KG+ND KR  LFTKL  E+ +A++Q   D + + +L  AI +A+A N+P DNIE AI +   G     +E +TYEG GPG  AI+I ALTDNR RT   VRH FS+ GG+LG +GSVAW F  RG++ IP EGR+    +E  L  A++AGAEDV+        +G+    V  V  +P +L  VRK LE  G++     FA VP T +E++         EK          Q L L+EALE+  DVQ V+ NA
Sbjct:    1 MAGHSKWAQIKRQKGANDQKRGALFTKLTREIMQAAKQGGPDPAGNFKLRLAIQRARAANMPNDNIERAIAKATGGASEDQLEEITYEGYGPGGIAILISALTDNRNRTVSEVRHQFSRAGGSLGETGSVAWQFEPRGIITIPLEGRDP---DEVAL-QAIDAGAEDVD-------VQGD----VIEVRTDPASLESVRKQLEAAGFQVENADFAMVPKTTIELD---------EK-------TAHQALRLIEALEDLEDVQRVYSNA 237
The following BLAST results are available for this feature:
BLAST of NO24G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_098503696.12.500e-4644.78YebC/PmpR family DNA-binding transcriptional regul... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01050NO24G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01050.1NO24G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01050.1.cds1NO24G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01050.1.cds2NO24G01050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01050.1.cds3NO24G01050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01050.1 ID=NO24G01050.1|Name=NO24G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=819bp
ATGATGATGTCTGGCCATTCCAAGTGGTCCAAAATCAAGCGCGCCAAAGG
CTCCAACGACGCTAAACGCGCAATCCTCTTCACCAAGCTTGCTGTCGAGC
TAACCGAGGCCTCGCGTCAAGCCAAGGGCGACACGTCCGACATTCGTCTT
GCCGCTGCCATCAGTAAGGCCAAGGCAAACAATGTGCCCAAAGACAACAT
CGAAGGCGCGATAAAGAGAGGGGTGGAAGGGAAAGGCTCCACGAACATGG
AAGCGGTGACATATGAAGGCATCGGTCCCGGCTCCACGGCCATCATCATC
GAAGCTCTAACTGACAACCGCAAGAGGACCGCACCAAACGTACGACATGC
CTTCAGTAAGAATGGAGGAACACTTGGATCGAGCGGAAGCGTTGCTTGGA
TGTTCGTGAGAAGGGGGTTGGTGGAGATACCGGAGGAAGGGAGGGAGAAA
GGGAGGGGCGAGGAGGCTTTGTTGGACGATGCCTTGGAAGCGGGGGCGGA
GGACGTGGAGGGAGACCCGGAGGAGGAATGGGAGGAGGGGGAGGATGAAC
CGCGGGTGACAAGAGTGTATTGTGAGCCGGGGGCACTGGCAGGAGTGCGA
AAGGGGTTGGAGGAGAGAGGCTGGAGGCCGTCCTTGGTCCAGTTCGCGTA
CGTGCCCACCACCTGGGTGGAGGTGGAGGTGGAGGAGGAGGAAGGGAAGG
AGAGGGAGAAGGGGAAGGTGGCGGTTGTGTCGCCAGGGCAGCAGCTGCTG
ACGCTACTGGAGGCGCTGGAGGAGGACCCCGATGTGCAGAATGTCTTTCA
TAACGCGCGGCTTATTTGA
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protein sequence of NO24G01050.1

>NO24G01050.1-protein ID=NO24G01050.1-protein|Name=NO24G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MMMSGHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGDTSDIRL
AAAISKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIII
EALTDNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREK
GRGEEALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVR
KGLEERGWRPSLVQFAYVPTTWVEVEVEEEEGKEREKGKVAVVSPGQQLL
TLLEALEEDPDVQNVFHNARLI*
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mRNA from alignment at chr24:292309..293380+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01050.1 ID=NO24G01050.1|Name=NO24G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1072bp|location=Sequence derived from alignment at chr24:292309..293380+ (Nannochloropsis oceanica)
ATGATGATGTCTGGCCATTCCAAGTGGTCCAAAATCAAGCGCGCCAAAGG
CTCCAACGACGGTACGTCTCCGTGAAGTGCAGCATTAATTTTGCCAGGCT
GTGAATCTTGTAAAAAGCTTGCCTTTACCCAGTCCCTTACTTCTCCCGCC
CTCCCTTCCTTCCTTCCTTCCTTCCTCCCAAGCTAAACGCGCAATCCTCT
TCACCAAGCTTGCTGTCGAGCTAACCGAGGCCTCGCGTCAAGCCAAGGGC
GACACGTCCGACATTCGTCTTGCCGCTGCCATCAGTAAGGCCAAGGCAAA
CAATGTGCCCAAAGACAACATCGAAGGCGCGATAAAGAGAGGGGTGGAAG
GGAAAGGCTCCACGAACATGGAAGCGGTGCGTATGTTTGCGGCAGGAGCT
TGCATTTCTTCTGTATCTCATTTGTCTGCTCGTTTCTTTCCTCTCTACGT
CCCTGCGCTTCCTCCCTCATTTATCCCAATGTCCCTCCCTCCATCCCTCC
TTGCGCAGGTGACATATGAAGGCATCGGTCCCGGCTCCACGGCCATCATC
ATCGAAGCTCTAACTGACAACCGCAAGAGGACCGCACCAAACGTACGACA
TGCCTTCAGTAAGAATGGAGGAACACTTGGATCGAGCGGAAGCGTTGCTT
GGATGTTCGTGAGAAGGGGGTTGGTGGAGATACCGGAGGAAGGGAGGGAG
AAAGGGAGGGGCGAGGAGGCTTTGTTGGACGATGCCTTGGAAGCGGGGGC
GGAGGACGTGGAGGGAGACCCGGAGGAGGAATGGGAGGAGGGGGAGGATG
AACCGCGGGTGACAAGAGTGTATTGTGAGCCGGGGGCACTGGCAGGAGTG
CGAAAGGGGTTGGAGGAGAGAGGCTGGAGGCCGTCCTTGGTCCAGTTCGC
GTACGTGCCCACCACCTGGGTGGAGGTGGAGGTGGAGGAGGAGGAAGGGA
AGGAGAGGGAGAAGGGGAAGGTGGCGGTTGTGTCGCCAGGGCAGCAGCTG
CTGACGCTACTGGAGGCGCTGGAGGAGGACCCCGATGTGCAGAATGTCTT
TCATAACGCGCGGCTTATTTGA
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Coding sequence (CDS) from alignment at chr24:292309..293380+

>NO24G01050.1 ID=NO24G01050.1|Name=NO24G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr24:292309..293380+ (Nannochloropsis oceanica)
ATGATGATGTCTGGCCATTCCAAGTGGTCCAAAATCAAGCGCGCCAAAGG
CTCCAACGACGCTAAACGCGCAATCCTCTTCACCAAGCTTGCTGTCGAGC
TAACCGAGGCCTCGCGTCAAGCCAAGGGCGACACGTCCGACATTCGTCTT
GCCGCTGCCATCAGTAAGGCCAAGGCAAACAATGTGCCCAAAGACAACAT
CGAAGGCGCGATAAAGAGAGGGGTGGAAGGGAAAGGCTCCACGAACATGG
AAGCGGTGACATATGAAGGCATCGGTCCCGGCTCCACGGCCATCATCATC
GAAGCTCTAACTGACAACCGCAAGAGGACCGCACCAAACGTACGACATGC
CTTCAGTAAGAATGGAGGAACACTTGGATCGAGCGGAAGCGTTGCTTGGA
TGTTCGTGAGAAGGGGGTTGGTGGAGATACCGGAGGAAGGGAGGGAGAAA
GGGAGGGGCGAGGAGGCTTTGTTGGACGATGCCTTGGAAGCGGGGGCGGA
GGACGTGGAGGGAGACCCGGAGGAGGAATGGGAGGAGGGGGAGGATGAAC
CGCGGGTGACAAGAGTGTATTGTGAGCCGGGGGCACTGGCAGGAGTGCGA
AAGGGGTTGGAGGAGAGAGGCTGGAGGCCGTCCTTGGTCCAGTTCGCGTA
CGTGCCCACCACCTGGGTGGAGGTGGAGGTGGAGGAGGAGGAAGGGAAGG
AGAGGGAGAAGGGGAAGGTGGCGGTTGTGTCGCCAGGGCAGCAGCTGCTG
ACGCTACTGGAGGCGCTGGAGGAGGACCCCGATGTGCAGAATGTCTTTCA
TAACGCGCGGCTTATTTGA
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Synonyms
Publications