NO24G00520, NO24G00520 (gene) Nannochloropsis oceanica

Overview
NameNO24G00520
Unique NameNO24G00520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2170
Alignment locationchr24:165746..167915 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:165746..167915 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO24G00520 vs. NCBI_GenBank
Match: EWM24296.1 (hypothetical protein Naga_100047g23 [Nannochloropsis gaditana])

HSP 1 Score: 313.9 bits (803), Expect = 9.200e-82
Identity = 271/525 (51.62%), Postives = 305/525 (58.10%), Query Frame = 0
Query:    1 MNNPYSDNPFD----AIYAAPVAIQGSSSRPTSPSXXXXXXXXLDDLINPFAVLGMENKSQKSPTAVSGPYSQASGAGYTSSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGMPSAQSAFQPPAPIITFQPYSPSVSPAFGSSPSSAYGQASPAQGTXXXXXXAFNSGLHTGRSSPFAAVSPFSSDGGSPXXXXXXXXXXXXXXXNVTDADLSLFAGPVVATKXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADDGWDIDDFGISWEAPEEAVAPTADADAVAAVPVQRGQHERQEEAVPAPEISSGNVSAPRGKKVSAIEAAIMAEHKMEGNVLARISVRTLIVKEWKETYWVIHHGKILLYRSKEDYLYNPIGVMVKKDIPLRCNLRCSEVTCKPYKGYGDLYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIVAYIXXXXXXXXXXXXXSPVGAQGH-SSVFANQERGRPQLPSPVQQRQASPKRGGGSPKVANGASAVSGAGGVDKYAKWGQIS 521
            M+  Y +NPFD     +   P   Q  S      +        LDDLINPFAVLG++N  + S T++                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         FQPPAPI T Q Y+PSVSPAFGSSPSSAYGQAS     XXXXX AF+S LHTG       +SP        XXXXXXXXXXXXXXX                T                                DGWD DDFGISW+APE   A T       A PV+     RQ  AV +P        A + K +S  EAAI AEHK EG +LARISVRTLIVKEWK+T+W I+ GK+LLYRS+ED+LYNP+GVMVKKDIPL  NLRCSEVTCKPYKGYGDLYHFTLEE+ +YGPSLVAKFAS   KS+RELRAVIVAYI             SP   + + SS +A     R    SP   R   P+    SPK  + AS  SGAGG+DKYAKWGQIS
Sbjct:    1 MSGFYGNNPFDMLDSGVTGRPSGTQSESKPIPQATSQQQHAETLDDLINPFAVLGLDNDDKSSSTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQPPAPIFTQQVYTPSVSPAFGSSPSSAYGQASXXXXXXXXXXPAFDSSLHTGE---LGYLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPHLQQGAPPATSEH----------------VTDGWDNDDFGISWDAPEATSAETQPEKPEPAAPVE--DRFRQGSAVESP-------YASQDKTLSPTEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSREDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQRSPTVGR-TGPRT--ASPKAGSEASGASGAGGLDKYAKWGQIS 494          
BLAST of NO24G00520 vs. NCBI_GenBank
Match: CBN74334.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.2 bits (269), Expect = 7.700e-20
Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 0
Query:  308 NVSAPRGKKVSAIEAAIMAEHKMEGNVLARISVRTLIVKEWKETYWVIH-HGKILLYRSKEDYLYNPIGVMVKKDIPLRCNLRCSEVTCKPYKGYGDLYHFTLEEIFEYGPSLVAKFASVDVKSIREL 435
            ++ A  G +  AI     A  K +G   ARISVRTL+VK+WK TY++      +LLYRS++D++YNP G M+KK + ++ N   + +  K YK +G L+HFTLEE  +YGPS+VAKFA  + + + +L
Sbjct:  352 SMGASGGSREVAIRPRQAAGGKADGECFARISVRTLLVKKWKTTYFIFELPDLLLLYRSRDDHMYNPRGTMIKKRVEVKHNHTLTRLKRKVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEDL 479          
BLAST of NO24G00520 vs. NCBI_GenBank
Match: EWM25077.1 (hypothetical protein Naga_100098g16 [Nannochloropsis gaditana])

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-8
Identity = 59/181 (32.60%), Postives = 89/181 (49.17%), Query Frame = 0
Query:  252 AADDGWDIDDFGISWEAPEEAVAPTADADAVAAVPVQRGQHERQEEAVPAPEISSGNVSAPRGKKVSAIEAAIMAEHKMEGNVLARISVRTLIVKEWKETYWVIHHGKILLYRSK-----EDYLYNPIGVMVKKDIPLRCNLRCSEVTCKPYKG-YGDLYHFTLEEIFEYG-PSLVAKFAS 426
            A DD W I+     WE P    A +         PV     ++   + PA  +SS +      +   +     M     +G VLAR+S R++I +EWK  YWVI + ++ +YRSK      DY+ +P    +KK IPLR +L+ + +  K Y G    LY F +E I E G  +++AKFA+
Sbjct:  195 ALDDSWSIE-----WEPPHPTRAVSDSVLRNEPKPV-----KKLAASTPASMLSSSS------EGFGSPSTFCMPVQIPDGVVLARVSARSIIGREWKPVYWVIVNRRLWIYRSKADYYPTDYIKDPFNKRIKKCIPLRESLQLTCIKNKLYPGEKRTLYTFGMESIEEGGKKTMIAKFAA 359          
BLAST of NO24G00520 vs. NCBI_GenBank
Match: GAX24355.1 (hypothetical protein FisN_4Lh477 [Fistulifera solaris])

HSP 1 Score: 67.4 bits (163), Expect = 1.500e-7
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 0
Query:  332 GNVLARISVRTLIVKEWKETYWVIHHG--KILLYRSK---EDYLYNPIGVMVKKDIPLRC-----------NLRCSEVTCKPYKGYGD--LYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIV 440
            G VLARIS RT+++K+WK+ +W I +G   +L +RS+   +D+L NP     +++  ++            N+R  +VT    K YG+  +  F LE   +YGP++ A F S + K + ELR  +V
Sbjct:  321 GYVLARISFRTIVIKKWKQVFW-IRYGPHTMLFFRSEADFDDWLNNPYHDQTQRNFLIKLAVNFVHDLYKPNVRGYQVTQCRTKAYGNKMVRQFKLERWMDYGPTIAAAFGSYNPKEVDELREALV 445          
BLAST of NO24G00520 vs. NCBI_GenBank
Match: XP_002179752.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48738.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 66.2 bits (160), Expect = 3.300e-7
Identity = 41/128 (32.03%), Postives = 72/128 (56.25%), Query Frame = 0
Query:  329 KMEGNVLARISVRTLIVKEWKETYWVIHHGKILL-YRSK---EDYLYNPIGVMVKKDIPLRC-----------NLRCSEVTCKPYKGYGD--LYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIV 440
            + +G VL+RIS RT+++K+WK+++WV +    +L +R++   +D+L NP     +++  ++            N+R  +VT    KGYG+  +  F LE   +YGP++ A F S D K +  LR  +V
Sbjct:  313 RKKGFVLSRISFRTIVMKKWKQSFWVQYGPHTMLWFRTQADFDDWLNNPYHNQQQRNFMIKLAVNFVHDLYKPNVRGYQVTQCRTKGYGNKLVRQFKLERWMDYGPTIAAAFGSYDPKEVDALREALV 440          
BLAST of NO24G00520 vs. NCBI_GenBank
Match: OEU10211.1 (hypothetical protein FRACYDRAFT_247827 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 66.2 bits (160), Expect = 3.300e-7
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 0
Query:  332 GNVLARISVRTLIVKEWKETYWVIHHGKILL-YRSK---EDYLYNPIGVMVKKDIPLRC-----------NLRCSEVT---CKPYKGYGDLYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIV 440
            G VL+RIS RT+++K+WK+++WV + G  +L +R++   +D+L NP    +++   ++            N+R  +VT    KPY     +  F LE   +YGP++ A F S D K +   R  IV
Sbjct:  301 GFVLSRISFRTIVMKKWKQSFWVQYGGHTMLWFRTQGDFDDWLNNPYHTQMQRSFLIKLAINFVHDLYKPNVRGYQVTQCRTKPYGKNKVVRQFKLERWMDYGPTIAAAFGSYDPKEVEACREAIV 426          
BLAST of NO24G00520 vs. NCBI_GenBank
Match: GAX26026.1 (hypothetical protein FisN_4Hh477 [Fistulifera solaris])

HSP 1 Score: 66.2 bits (160), Expect = 3.300e-7
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 0
Query:  332 GNVLARISVRTLIVKEWKETYWVIHHG--KILLYRSK---EDYLYNPIGVMVKKDIPLRC-----------NLRCSEVTCKPYKGYGD--LYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIV 440
            G VLARIS RT+++K+WK+ +W I +G   +L +RS+   +D+L NP     +++  ++            N+R  +VT    K YG+  +  F LE   +YGP++ A F S + K + +LR  +V
Sbjct:  315 GYVLARISFRTIVIKKWKQVFW-IRYGPHTMLFFRSEADFDDWLNNPYHDQTQRNFLIKLAVNFVHDLYKPNVRGYQVTQCRTKAYGNKMVRQFKLERWMDYGPTIAAAFGSYNPKEVDDLREALV 439          
The following BLAST results are available for this feature:
BLAST of NO24G00520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM24296.19.200e-8251.62hypothetical protein Naga_100047g23 [Nannochlorops... [more]
CBN74334.17.700e-2043.75conserved unknown protein [Ectocarpus siliculosus][more]
EWM25077.11.400e-832.60hypothetical protein Naga_100098g16 [Nannochlorops... [more]
GAX24355.11.500e-734.13hypothetical protein FisN_4Lh477 [Fistulifera sola... [more]
XP_002179752.13.300e-732.03predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU10211.13.300e-732.54hypothetical protein FRACYDRAFT_247827 [Fragilario... [more]
GAX26026.13.300e-733.33hypothetical protein FisN_4Hh477 [Fistulifera sola... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL039nonsL039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR026ngnoR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002891NSK002891Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00520.1NO24G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598106gene_7283Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100047g23gene6165Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00520.1NO24G00520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00520 ID=NO24G00520|Name=NO24G00520|organism=Nannochloropsis oceanica|type=gene|length=2170bp
CCCTGTATGCCATACCTTGCGTTTGCATCTAAGGTGCTAGCGTGCAGGTG
GCTCACGCCGTGGAAAACAACGAGACTTTTCCATCTTCTCGTGCATAATG
TTGTGCTTTGGTGCGTTGGCTTTTTTCGACACCACACACAGCAAATCAAG
AATTGCCGCATGCATCCCTTGTGCCTTCCGCCCCATCGCACCAGACCCTT
CGACTATAACCCACTGCATTTTCTTCTTCGAAGGGGAAATCATTAAGCCC
CCAATGCTGGCGCTGAGGCACCAAGACTAAAGGCACATGACCGAGGGACG
GGCCAGCACTTTCCTTTTTCTTCCGCTCCACAAACGACGCCTGTCCCCCT
TGCCCATGCCTCCAGAGATGGAGGATGCCCGGTTTCTGTTGCGCCATATT
TGGAGCATGTCGTCCCTCTTGGGACTTGGACACGATTTCTTGGGGAACAA
ACCACACACAACTCAGCTGCATGCAGTCCGCAAAACACACTCCTATGCCG
CGCCTCAAGAACGCACAAGGGCAGACACTTGTCTCATCTCTCCCATCAAT
TCAGTCTGAACGCACTTCCCTTCATCCATCCCTCCCTTCATATAACACAG
GCAACCATGAACAACCCCTACAGTGATAATCCATTTGATGCCATCTATGC
CGCCCCCGTGGCCATCCAGGGCAGCAGCAGCCGGCCCACGAGCCCCTCCC
AGCAGCAGCAGCAAGCCGCTGCCTTAGACGACCTGATCAACCCTTTTGCC
GTTCTTGGTATGGAGAACAAGAGCCAGAAATCCCCCACAGCTGTATCGGG
CCCCTACTCCCAGGCTTCGGGTGCAGGGTACACGTCCTCCTGCGCCGCGG
GCAGCTCCGCCGCACTCTACTCACCCTCCCATGGGCCTCAGCAACAGCAA
CATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGATTGGGGAATGCCCTC
GGCCCAATCGGCCTTCCAGCCCCCCGCACCCATCATCACCTTTCAGCCGT
ACTCCCCCTCTGTTAGCCCCGCATTTGGCAGCAGCCCTTCTTCAGCCTAC
GGTCAAGCAAGCCCTGCTCAAGGCACGTACTCTCCCGCCAGTCCGGCCTT
CAACAGTGGGTTACACACCGGCCGAAGCTCCCCCTTCGCCGCGGTTTCCC
CCTTCTCTTCCGACGGCGGGTCGCCCTATGGCAACAACAGCAGCAGCAAC
AACAGCAGCAATAACATGCCTAATGTGACCGATGCGGACCTCTCTCTCTT
TGCGGGCCCTGTGGTGGCCACTAAGTCTGCCGTAGTCGCTCTGCCCAAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGTGGGG
GCCAGCCCCGCGGCTGACGATGGATGGGATATTGATGACTTTGGTATTTC
CTGGGAAGCTCCCGAGGAGGCCGTTGCTCCTACTGCTGATGCTGATGCTG
TTGCGGCTGTGCCCGTCCAGCGTGGGCAGCATGAACGCCAGGAGGAGGCG
GTGCCTGCACCTGAAATCTCATCGGGAAATGTGAGCGCGCCTCGAGGGAA
GAAGGTCAGTGCGATCGAGGCGGCTATCATGGCCGAGCATAAGATGGAGG
GGAATGTTTTGGCGCGAATCTCGGTGCGGACGCTGATCGTGAAGGAGTGG
AAAGAAACCTACTGGGTCATTCACCATGGCAAAATCCTACTCTACCGCTC
CAAGGAAGATTATCTCTACAACCCCATCGGGGTGATGGTGAAGAAAGACA
TCCCACTGCGTTGTAATTTGCGGTGCTCTGAAGTGACCTGTAAGCCCTAC
AAGGGCTATGGCGACCTCTACCACTTCACTTTGGAGGAAATATTTGAATA
TGGACCCTCTCTCGTGGCTAAATTTGCATCTGTTGACGTGAAAAGCATCC
GAGAGCTTCGCGCCGTCATTGTTGCCTACATCATCGCGGAGCGGAAGAAG
AGGGGTGGTGGCGGTCGCCGTAGCCCCGTTGGGGCCCAGGGACACAGTAG
TGTCTTTGCTAATCAAGAGCGCGGGCGGCCTCAGCTGCCTTCGCCCGTAC
AACAAAGGCAGGCCAGCCCAAAGCGAGGGGGAGGAAGCCCTAAGGTGGCT
AATGGGGCCTCGGCGGTGTCGGGCGCGGGCGGAGTGGATAAATATGCGAA
GTGGGGGCAGATTAGTTGAG
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protein sequence of NO24G00520.1

>NO24G00520.1-protein ID=NO24G00520.1-protein|Name=NO24G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MNNPYSDNPFDAIYAAPVAIQGSSSRPTSPSQQQQQAAALDDLINPFAVL
GMENKSQKSPTAVSGPYSQASGAGYTSSCAAGSSAALYSPSHGPQQQQHQ
QQQQQQQQQDWGMPSAQSAFQPPAPIITFQPYSPSVSPAFGSSPSSAYGQ
ASPAQGTYSPASPAFNSGLHTGRSSPFAAVSPFSSDGGSPYGNNSSSNNS
SNNMPNVTDADLSLFAGPVVATKSAVVALPKQQQQQQQQQQQQQQEVGAS
PAADDGWDIDDFGISWEAPEEAVAPTADADAVAAVPVQRGQHERQEEAVP
APEISSGNVSAPRGKKVSAIEAAIMAEHKMEGNVLARISVRTLIVKEWKE
TYWVIHHGKILLYRSKEDYLYNPIGVMVKKDIPLRCNLRCSEVTCKPYKG
YGDLYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIVAYIIAERKKRG
GGGRRSPVGAQGHSSVFANQERGRPQLPSPVQQRQASPKRGGGSPKVANG
ASAVSGAGGVDKYAKWGQIS*
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Synonyms
Publications