NO24G00520, NO24G00520 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO24G00520 vs. NCBI_GenBank
Match: EWM24296.1 (hypothetical protein Naga_100047g23 [Nannochloropsis gaditana]) HSP 1 Score: 313.9 bits (803), Expect = 9.200e-82 Identity = 271/525 (51.62%), Postives = 305/525 (58.10%), Query Frame = 0 Query: 1 MNNPYSDNPFD----AIYAAPVAIQGSSSRPTSPSXXXXXXXXLDDLINPFAVLGMENKSQKSPTAVSGPYSQASGAGYTSSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGMPSAQSAFQPPAPIITFQPYSPSVSPAFGSSPSSAYGQASPAQGTXXXXXXAFNSGLHTGRSSPFAAVSPFSSDGGSPXXXXXXXXXXXXXXXNVTDADLSLFAGPVVATKXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADDGWDIDDFGISWEAPEEAVAPTADADAVAAVPVQRGQHERQEEAVPAPEISSGNVSAPRGKKVSAIEAAIMAEHKMEGNVLARISVRTLIVKEWKETYWVIHHGKILLYRSKEDYLYNPIGVMVKKDIPLRCNLRCSEVTCKPYKGYGDLYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIVAYIXXXXXXXXXXXXXSPVGAQGH-SSVFANQERGRPQLPSPVQQRQASPKRGGGSPKVANGASAVSGAGGVDKYAKWGQIS 521 M+ Y +NPFD + P Q S + LDDLINPFAVLG++N + S T++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FQPPAPI T Q Y+PSVSPAFGSSPSSAYGQAS XXXXX AF+S LHTG +SP XXXXXXXXXXXXXXX T DGWD DDFGISW+APE A T A PV+ RQ AV +P A + K +S EAAI AEHK EG +LARISVRTLIVKEWK+T+W I+ GK+LLYRS+ED+LYNP+GVMVKKDIPL NLRCSEVTCKPYKGYGDLYHFTLEE+ +YGPSLVAKFAS KS+RELRAVIVAYI SP + + SS +A R SP R P+ SPK + AS SGAGG+DKYAKWGQIS Sbjct: 1 MSGFYGNNPFDMLDSGVTGRPSGTQSESKPIPQATSQQQHAETLDDLINPFAVLGLDNDDKSSSTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQPPAPIFTQQVYTPSVSPAFGSSPSSAYGQASXXXXXXXXXXPAFDSSLHTGE---LGYLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPHLQQGAPPATSEH----------------VTDGWDNDDFGISWDAPEATSAETQPEKPEPAAPVE--DRFRQGSAVESP-------YASQDKTLSPTEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSREDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQRSPTVGR-TGPRT--ASPKAGSEASGASGAGGLDKYAKWGQIS 494
BLAST of NO24G00520 vs. NCBI_GenBank
Match: CBN74334.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 108.2 bits (269), Expect = 7.700e-20 Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 0 Query: 308 NVSAPRGKKVSAIEAAIMAEHKMEGNVLARISVRTLIVKEWKETYWVIH-HGKILLYRSKEDYLYNPIGVMVKKDIPLRCNLRCSEVTCKPYKGYGDLYHFTLEEIFEYGPSLVAKFASVDVKSIREL 435 ++ A G + AI A K +G ARISVRTL+VK+WK TY++ +LLYRS++D++YNP G M+KK + ++ N + + K YK +G L+HFTLEE +YGPS+VAKFA + + + +L Sbjct: 352 SMGASGGSREVAIRPRQAAGGKADGECFARISVRTLLVKKWKTTYFIFELPDLLLLYRSRDDHMYNPRGTMIKKRVEVKHNHTLTRLKRKVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEDL 479
BLAST of NO24G00520 vs. NCBI_GenBank
Match: EWM25077.1 (hypothetical protein Naga_100098g16 [Nannochloropsis gaditana]) HSP 1 Score: 70.9 bits (172), Expect = 1.400e-8 Identity = 59/181 (32.60%), Postives = 89/181 (49.17%), Query Frame = 0 Query: 252 AADDGWDIDDFGISWEAPEEAVAPTADADAVAAVPVQRGQHERQEEAVPAPEISSGNVSAPRGKKVSAIEAAIMAEHKMEGNVLARISVRTLIVKEWKETYWVIHHGKILLYRSK-----EDYLYNPIGVMVKKDIPLRCNLRCSEVTCKPYKG-YGDLYHFTLEEIFEYG-PSLVAKFAS 426 A DD W I+ WE P A + PV ++ + PA +SS + + + M +G VLAR+S R++I +EWK YWVI + ++ +YRSK DY+ +P +KK IPLR +L+ + + K Y G LY F +E I E G +++AKFA+ Sbjct: 195 ALDDSWSIE-----WEPPHPTRAVSDSVLRNEPKPV-----KKLAASTPASMLSSSS------EGFGSPSTFCMPVQIPDGVVLARVSARSIIGREWKPVYWVIVNRRLWIYRSKADYYPTDYIKDPFNKRIKKCIPLRESLQLTCIKNKLYPGEKRTLYTFGMESIEEGGKKTMIAKFAA 359
BLAST of NO24G00520 vs. NCBI_GenBank
Match: GAX24355.1 (hypothetical protein FisN_4Lh477 [Fistulifera solaris]) HSP 1 Score: 67.4 bits (163), Expect = 1.500e-7 Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 0 Query: 332 GNVLARISVRTLIVKEWKETYWVIHHG--KILLYRSK---EDYLYNPIGVMVKKDIPLRC-----------NLRCSEVTCKPYKGYGD--LYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIV 440 G VLARIS RT+++K+WK+ +W I +G +L +RS+ +D+L NP +++ ++ N+R +VT K YG+ + F LE +YGP++ A F S + K + ELR +V Sbjct: 321 GYVLARISFRTIVIKKWKQVFW-IRYGPHTMLFFRSEADFDDWLNNPYHDQTQRNFLIKLAVNFVHDLYKPNVRGYQVTQCRTKAYGNKMVRQFKLERWMDYGPTIAAAFGSYNPKEVDELREALV 445
BLAST of NO24G00520 vs. NCBI_GenBank
Match: XP_002179752.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48738.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 66.2 bits (160), Expect = 3.300e-7 Identity = 41/128 (32.03%), Postives = 72/128 (56.25%), Query Frame = 0 Query: 329 KMEGNVLARISVRTLIVKEWKETYWVIHHGKILL-YRSK---EDYLYNPIGVMVKKDIPLRC-----------NLRCSEVTCKPYKGYGD--LYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIV 440 + +G VL+RIS RT+++K+WK+++WV + +L +R++ +D+L NP +++ ++ N+R +VT KGYG+ + F LE +YGP++ A F S D K + LR +V Sbjct: 313 RKKGFVLSRISFRTIVMKKWKQSFWVQYGPHTMLWFRTQADFDDWLNNPYHNQQQRNFMIKLAVNFVHDLYKPNVRGYQVTQCRTKGYGNKLVRQFKLERWMDYGPTIAAAFGSYDPKEVDALREALV 440
BLAST of NO24G00520 vs. NCBI_GenBank
Match: OEU10211.1 (hypothetical protein FRACYDRAFT_247827 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 66.2 bits (160), Expect = 3.300e-7 Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 0 Query: 332 GNVLARISVRTLIVKEWKETYWVIHHGKILL-YRSK---EDYLYNPIGVMVKKDIPLRC-----------NLRCSEVT---CKPYKGYGDLYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIV 440 G VL+RIS RT+++K+WK+++WV + G +L +R++ +D+L NP +++ ++ N+R +VT KPY + F LE +YGP++ A F S D K + R IV Sbjct: 301 GFVLSRISFRTIVMKKWKQSFWVQYGGHTMLWFRTQGDFDDWLNNPYHTQMQRSFLIKLAINFVHDLYKPNVRGYQVTQCRTKPYGKNKVVRQFKLERWMDYGPTIAAAFGSYDPKEVEACREAIV 426
BLAST of NO24G00520 vs. NCBI_GenBank
Match: GAX26026.1 (hypothetical protein FisN_4Hh477 [Fistulifera solaris]) HSP 1 Score: 66.2 bits (160), Expect = 3.300e-7 Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 0 Query: 332 GNVLARISVRTLIVKEWKETYWVIHHG--KILLYRSK---EDYLYNPIGVMVKKDIPLRC-----------NLRCSEVTCKPYKGYGD--LYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIV 440 G VLARIS RT+++K+WK+ +W I +G +L +RS+ +D+L NP +++ ++ N+R +VT K YG+ + F LE +YGP++ A F S + K + +LR +V Sbjct: 315 GYVLARISFRTIVIKKWKQVFW-IRYGPHTMLFFRSEADFDDWLNNPYHDQTQRNFLIKLAVNFVHDLYKPNVRGYQVTQCRTKAYGNKMVRQFKLERWMDYGPTIAAAFGSYNPKEVDDLREALV 439 The following BLAST results are available for this feature:
BLAST of NO24G00520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 7
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G00520 ID=NO24G00520|Name=NO24G00520|organism=Nannochloropsis oceanica|type=gene|length=2170bpback to top protein sequence of NO24G00520.1 >NO24G00520.1-protein ID=NO24G00520.1-protein|Name=NO24G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bpback to top Synonyms
Publications
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