NO24G00520.1, NO24G00520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00520.1
Unique NameNO24G00520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2170
Alignment locationchr24:165746..167915 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:165746..167915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00520.1 vs.
Match: EWM24296.1 (hypothetical protein Naga_100047g23 [Nannochloropsis gaditana])

HSP 1 Score: 401.0 bits (1029), Expect = 5.700e-108
Identity = 278/532 (52.26%), Postives = 322/532 (60.53%), Query Frame = 0 
Query:    1 MNNPYSDNPFD----AIYAAPVAIQGSSSRPTSPSQQQQQAAALDDLINPFAVLGMENKSQKSPTAVSGPYSQASGAGYTSSCAAGSSAALYSPSHGPQQQQHQQQ--QQQQQQQDWGMPSAQSAFQPPAPIITFQPYSPSVSPAFGSSPSSAYGQASPAQGTYSPASPAFNSGLHTGRSSPFA-AVSPFSSDGGSPYGNNSSSNNSSNNMPNVTDADLSLFAGPVVATKSAVVALPKQQQQQQQQQQQQQQEVGASPAAD----DGWDIDDFGISWEAPEEAVAPTADADAVAAVPVQRGQHERQEEAVPAPEISSGNVSAPRGKKVSAIEAAIMAEHKMEGNVLARISVRTLIVKEWKETYWVIHHGKILLYRSKEDYLYNPIGVMVKKDIPLRCNLRCSEVTCKPYKGYGDLYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIVAYIIAERKKRGGGGRRSPVGAQGH-SSVFANQERGRPQLPSPVQQRQASPKRGGGSPKVANGASAVSGAGGVDKYAKWGQIS 521
            M+  Y +NPFD     +   P   Q  S      + QQQ A  LDDLINPFAVLG++N  + S T++  P+ QASGA    S A  ++         PQ     Q      Q  Q    PS+QS FQPPAPI T Q Y+PSVSPAFGSSPSSAYGQASPA G+YSP SPAF+S LHTG     + + SP  S GG+                 VTDADL+LFAGP  +   A  +        QQ         GA PA      DGWD DDFGISW+APE   A T       A PV+     RQ  AV +P  S       + K +S  EAAI AEHK EG +LARISVRTLIVKEWK+T+W I+ GK+LLYRS+ED+LYNP+GVMVKKDIPL  NLRCSEVTCKPYKGYGDLYHFTLEE+ +YGPSLVAKFAS   KS+RELRAVIVAYIIAERKKR    RRSP   + + SS +A     R    SP   R   P+    SPK  + AS  SGAGG+DKYAKWGQIS
Sbjct:    1 MSGFYGNNPFDMLDSGVTGRPSGTQSESKPIPQATSQQQHAETLDDLINPFAVLGLDNDDKSSSTSL--PHPQASGASCLPSQAPSATTCPPPQLVAPQPVAMLQALTPTSQSLQPRINPSSQSIFQPPAPIFTQQVYTPSVSPAFGSSPSSAYGQASPAYGSYSPTSPAFDSSLHTGELGYLSPSPSPVGSGGGAKV---------------VTDADLTLFAGPSRSPTPAPASPTPITPHLQQ---------GAPPATSEHVTDGWDNDDFGISWDAPEATSAETQPEKPEPAAPVE--DRFRQGSAVESPYAS-------QDKTLSPTEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSREDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQRSPTVGR-TGPRT--ASPKAGSEASGASGAGGLDKYAKWGQIS 494
The following BLAST results are available for this feature:
BLAST of NO24G00520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24296.15.700e-10852.26hypothetical protein Naga_100047g23 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00520NO24G00520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00520.1NO24G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00520.1.cds1NO24G00520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00520.1 ID=NO24G00520.1|Name=NO24G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2170bp
CCCTGTATGCCATACCTTGCGTTTGCATCTAAGGTGCTAGCGTGCAGGTG
GCTCACGCCGTGGAAAACAACGAGACTTTTCCATCTTCTCGTGCATAATG
TTGTGCTTTGGTGCGTTGGCTTTTTTCGACACCACACACAGCAAATCAAG
AATTGCCGCATGCATCCCTTGTGCCTTCCGCCCCATCGCACCAGACCCTT
CGACTATAACCCACTGCATTTTCTTCTTCGAAGGGGAAATCATTAAGCCC
CCAATGCTGGCGCTGAGGCACCAAGACTAAAGGCACATGACCGAGGGACG
GGCCAGCACTTTCCTTTTTCTTCCGCTCCACAAACGACGCCTGTCCCCCT
TGCCCATGCCTCCAGAGATGGAGGATGCCCGGTTTCTGTTGCGCCATATT
TGGAGCATGTCGTCCCTCTTGGGACTTGGACACGATTTCTTGGGGAACAA
ACCACACACAACTCAGCTGCATGCAGTCCGCAAAACACACTCCTATGCCG
CGCCTCAAGAACGCACAAGGGCAGACACTTGTCTCATCTCTCCCATCAAT
TCAGTCTGAACGCACTTCCCTTCATCCATCCCTCCCTTCATATAACACAG
GCAACCATGAACAACCCCTACAGTGATAATCCATTTGATGCCATCTATGC
CGCCCCCGTGGCCATCCAGGGCAGCAGCAGCCGGCCCACGAGCCCCTCCC
AGCAGCAGCAGCAAGCCGCTGCCTTAGACGACCTGATCAACCCTTTTGCC
GTTCTTGGTATGGAGAACAAGAGCCAGAAATCCCCCACAGCTGTATCGGG
CCCCTACTCCCAGGCTTCGGGTGCAGGGTACACGTCCTCCTGCGCCGCGG
GCAGCTCCGCCGCACTCTACTCACCCTCCCATGGGCCTCAGCAACAGCAA
CATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGATTGGGGAATGCCCTC
GGCCCAATCGGCCTTCCAGCCCCCCGCACCCATCATCACCTTTCAGCCGT
ACTCCCCCTCTGTTAGCCCCGCATTTGGCAGCAGCCCTTCTTCAGCCTAC
GGTCAAGCAAGCCCTGCTCAAGGCACGTACTCTCCCGCCAGTCCGGCCTT
CAACAGTGGGTTACACACCGGCCGAAGCTCCCCCTTCGCCGCGGTTTCCC
CCTTCTCTTCCGACGGCGGGTCGCCCTATGGCAACAACAGCAGCAGCAAC
AACAGCAGCAATAACATGCCTAATGTGACCGATGCGGACCTCTCTCTCTT
TGCGGGCCCTGTGGTGGCCACTAAGTCTGCCGTAGTCGCTCTGCCCAAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGTGGGG
GCCAGCCCCGCGGCTGACGATGGATGGGATATTGATGACTTTGGTATTTC
CTGGGAAGCTCCCGAGGAGGCCGTTGCTCCTACTGCTGATGCTGATGCTG
TTGCGGCTGTGCCCGTCCAGCGTGGGCAGCATGAACGCCAGGAGGAGGCG
GTGCCTGCACCTGAAATCTCATCGGGAAATGTGAGCGCGCCTCGAGGGAA
GAAGGTCAGTGCGATCGAGGCGGCTATCATGGCCGAGCATAAGATGGAGG
GGAATGTTTTGGCGCGAATCTCGGTGCGGACGCTGATCGTGAAGGAGTGG
AAAGAAACCTACTGGGTCATTCACCATGGCAAAATCCTACTCTACCGCTC
CAAGGAAGATTATCTCTACAACCCCATCGGGGTGATGGTGAAGAAAGACA
TCCCACTGCGTTGTAATTTGCGGTGCTCTGAAGTGACCTGTAAGCCCTAC
AAGGGCTATGGCGACCTCTACCACTTCACTTTGGAGGAAATATTTGAATA
TGGACCCTCTCTCGTGGCTAAATTTGCATCTGTTGACGTGAAAAGCATCC
GAGAGCTTCGCGCCGTCATTGTTGCCTACATCATCGCGGAGCGGAAGAAG
AGGGGTGGTGGCGGTCGCCGTAGCCCCGTTGGGGCCCAGGGACACAGTAG
TGTCTTTGCTAATCAAGAGCGCGGGCGGCCTCAGCTGCCTTCGCCCGTAC
AACAAAGGCAGGCCAGCCCAAAGCGAGGGGGAGGAAGCCCTAAGGTGGCT
AATGGGGCCTCGGCGGTGTCGGGCGCGGGCGGAGTGGATAAATATGCGAA
GTGGGGGCAGATTAGTTGAG
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protein sequence of NO24G00520.1

>NO24G00520.1-protein ID=NO24G00520.1-protein|Name=NO24G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MNNPYSDNPFDAIYAAPVAIQGSSSRPTSPSQQQQQAAALDDLINPFAVL
GMENKSQKSPTAVSGPYSQASGAGYTSSCAAGSSAALYSPSHGPQQQQHQ
QQQQQQQQQDWGMPSAQSAFQPPAPIITFQPYSPSVSPAFGSSPSSAYGQ
ASPAQGTYSPASPAFNSGLHTGRSSPFAAVSPFSSDGGSPYGNNSSSNNS
SNNMPNVTDADLSLFAGPVVATKSAVVALPKQQQQQQQQQQQQQQEVGAS
PAADDGWDIDDFGISWEAPEEAVAPTADADAVAAVPVQRGQHERQEEAVP
APEISSGNVSAPRGKKVSAIEAAIMAEHKMEGNVLARISVRTLIVKEWKE
TYWVIHHGKILLYRSKEDYLYNPIGVMVKKDIPLRCNLRCSEVTCKPYKG
YGDLYHFTLEEIFEYGPSLVAKFASVDVKSIRELRAVIVAYIIAERKKRG
GGGRRSPVGAQGHSSVFANQERGRPQLPSPVQQRQASPKRGGGSPKVANG
ASAVSGAGGVDKYAKWGQIS*
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mRNA from alignment at chr24:165746..167915+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00520.1 ID=NO24G00520.1|Name=NO24G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2170bp|location=Sequence derived from alignment at chr24:165746..167915+ (Nannochloropsis oceanica)
CCCTGTATGCCATACCTTGCGTTTGCATCTAAGGTGCTAGCGTGCAGGTG
GCTCACGCCGTGGAAAACAACGAGACTTTTCCATCTTCTCGTGCATAATG
TTGTGCTTTGGTGCGTTGGCTTTTTTCGACACCACACACAGCAAATCAAG
AATTGCCGCATGCATCCCTTGTGCCTTCCGCCCCATCGCACCAGACCCTT
CGACTATAACCCACTGCATTTTCTTCTTCGAAGGGGAAATCATTAAGCCC
CCAATGCTGGCGCTGAGGCACCAAGACTAAAGGCACATGACCGAGGGACG
GGCCAGCACTTTCCTTTTTCTTCCGCTCCACAAACGACGCCTGTCCCCCT
TGCCCATGCCTCCAGAGATGGAGGATGCCCGGTTTCTGTTGCGCCATATT
TGGAGCATGTCGTCCCTCTTGGGACTTGGACACGATTTCTTGGGGAACAA
ACCACACACAACTCAGCTGCATGCAGTCCGCAAAACACACTCCTATGCCG
CGCCTCAAGAACGCACAAGGGCAGACACTTGTCTCATCTCTCCCATCAAT
TCAGTCTGAACGCACTTCCCTTCATCCATCCCTCCCTTCATATAACACAG
GCAACCATGAACAACCCCTACAGTGATAATCCATTTGATGCCATCTATGC
CGCCCCCGTGGCCATCCAGGGCAGCAGCAGCCGGCCCACGAGCCCCTCCC
AGCAGCAGCAGCAAGCCGCTGCCTTAGACGACCTGATCAACCCTTTTGCC
GTTCTTGGTATGGAGAACAAGAGCCAGAAATCCCCCACAGCTGTATCGGG
CCCCTACTCCCAGGCTTCGGGTGCAGGGTACACGTCCTCCTGCGCCGCGG
GCAGCTCCGCCGCACTCTACTCACCCTCCCATGGGCCTCAGCAACAGCAA
CATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGATTGGGGAATGCCCTC
GGCCCAATCGGCCTTCCAGCCCCCCGCACCCATCATCACCTTTCAGCCGT
ACTCCCCCTCTGTTAGCCCCGCATTTGGCAGCAGCCCTTCTTCAGCCTAC
GGTCAAGCAAGCCCTGCTCAAGGCACGTACTCTCCCGCCAGTCCGGCCTT
CAACAGTGGGTTACACACCGGCCGAAGCTCCCCCTTCGCCGCGGTTTCCC
CCTTCTCTTCCGACGGCGGGTCGCCCTATGGCAACAACAGCAGCAGCAAC
AACAGCAGCAATAACATGCCTAATGTGACCGATGCGGACCTCTCTCTCTT
TGCGGGCCCTGTGGTGGCCACTAAGTCTGCCGTAGTCGCTCTGCCCAAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGTGGGG
GCCAGCCCCGCGGCTGACGATGGATGGGATATTGATGACTTTGGTATTTC
CTGGGAAGCTCCCGAGGAGGCCGTTGCTCCTACTGCTGATGCTGATGCTG
TTGCGGCTGTGCCCGTCCAGCGTGGGCAGCATGAACGCCAGGAGGAGGCG
GTGCCTGCACCTGAAATCTCATCGGGAAATGTGAGCGCGCCTCGAGGGAA
GAAGGTCAGTGCGATCGAGGCGGCTATCATGGCCGAGCATAAGATGGAGG
GGAATGTTTTGGCGCGAATCTCGGTGCGGACGCTGATCGTGAAGGAGTGG
AAAGAAACCTACTGGGTCATTCACCATGGCAAAATCCTACTCTACCGCTC
CAAGGAAGATTATCTCTACAACCCCATCGGGGTGATGGTGAAGAAAGACA
TCCCACTGCGTTGTAATTTGCGGTGCTCTGAAGTGACCTGTAAGCCCTAC
AAGGGCTATGGCGACCTCTACCACTTCACTTTGGAGGAAATATTTGAATA
TGGACCCTCTCTCGTGGCTAAATTTGCATCTGTTGACGTGAAAAGCATCC
GAGAGCTTCGCGCCGTCATTGTTGCCTACATCATCGCGGAGCGGAAGAAG
AGGGGTGGTGGCGGTCGCCGTAGCCCCGTTGGGGCCCAGGGACACAGTAG
TGTCTTTGCTAATCAAGAGCGCGGGCGGCCTCAGCTGCCTTCGCCCGTAC
AACAAAGGCAGGCCAGCCCAAAGCGAGGGGGAGGAAGCCCTAAGGTGGCT
AATGGGGCCTCGGCGGTGTCGGGCGCGGGCGGAGTGGATAAATATGCGAA
GTGGGGGCAGATTAGTTGAG
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Coding sequence (CDS) from alignment at chr24:165746..167915+

>NO24G00520.1 ID=NO24G00520.1|Name=NO24G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr24:165746..167915+ (Nannochloropsis oceanica)
ATGAACAACCCCTACAGTGATAATCCATTTGATGCCATCTATGCCGCCCC
CGTGGCCATCCAGGGCAGCAGCAGCCGGCCCACGAGCCCCTCCCAGCAGC
AGCAGCAAGCCGCTGCCTTAGACGACCTGATCAACCCTTTTGCCGTTCTT
GGTATGGAGAACAAGAGCCAGAAATCCCCCACAGCTGTATCGGGCCCCTA
CTCCCAGGCTTCGGGTGCAGGGTACACGTCCTCCTGCGCCGCGGGCAGCT
CCGCCGCACTCTACTCACCCTCCCATGGGCCTCAGCAACAGCAACATCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGGATTGGGGAATGCCCTCGGCCCA
ATCGGCCTTCCAGCCCCCCGCACCCATCATCACCTTTCAGCCGTACTCCC
CCTCTGTTAGCCCCGCATTTGGCAGCAGCCCTTCTTCAGCCTACGGTCAA
GCAAGCCCTGCTCAAGGCACGTACTCTCCCGCCAGTCCGGCCTTCAACAG
TGGGTTACACACCGGCCGAAGCTCCCCCTTCGCCGCGGTTTCCCCCTTCT
CTTCCGACGGCGGGTCGCCCTATGGCAACAACAGCAGCAGCAACAACAGC
AGCAATAACATGCCTAATGTGACCGATGCGGACCTCTCTCTCTTTGCGGG
CCCTGTGGTGGCCACTAAGTCTGCCGTAGTCGCTCTGCCCAAACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGTGGGGGCCAGC
CCCGCGGCTGACGATGGATGGGATATTGATGACTTTGGTATTTCCTGGGA
AGCTCCCGAGGAGGCCGTTGCTCCTACTGCTGATGCTGATGCTGTTGCGG
CTGTGCCCGTCCAGCGTGGGCAGCATGAACGCCAGGAGGAGGCGGTGCCT
GCACCTGAAATCTCATCGGGAAATGTGAGCGCGCCTCGAGGGAAGAAGGT
CAGTGCGATCGAGGCGGCTATCATGGCCGAGCATAAGATGGAGGGGAATG
TTTTGGCGCGAATCTCGGTGCGGACGCTGATCGTGAAGGAGTGGAAAGAA
ACCTACTGGGTCATTCACCATGGCAAAATCCTACTCTACCGCTCCAAGGA
AGATTATCTCTACAACCCCATCGGGGTGATGGTGAAGAAAGACATCCCAC
TGCGTTGTAATTTGCGGTGCTCTGAAGTGACCTGTAAGCCCTACAAGGGC
TATGGCGACCTCTACCACTTCACTTTGGAGGAAATATTTGAATATGGACC
CTCTCTCGTGGCTAAATTTGCATCTGTTGACGTGAAAAGCATCCGAGAGC
TTCGCGCCGTCATTGTTGCCTACATCATCGCGGAGCGGAAGAAGAGGGGT
GGTGGCGGTCGCCGTAGCCCCGTTGGGGCCCAGGGACACAGTAGTGTCTT
TGCTAATCAAGAGCGCGGGCGGCCTCAGCTGCCTTCGCCCGTACAACAAA
GGCAGGCCAGCCCAAAGCGAGGGGGAGGAAGCCCTAAGGTGGCTAATGGG
GCCTCGGCGGTGTCGGGCGCGGGCGGAGTGGATAAATATGCGAAGTGGGG
GCAGATTAGTTGA
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Synonyms
Publications