NO23G01870, NO23G01870 (gene) Nannochloropsis oceanica

Overview
NameNO23G01870
Unique NameNO23G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2013
Alignment locationchr23:671171..673183 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:671171..673183 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO23G01870 vs. NCBI_GenBank
Match: EWM27826.1 (hypothetical protein Naga_100074g3 [Nannochloropsis gaditana] >EWM27827.1 hypothetical protein Naga_100074g3 [Nannochloropsis gaditana])

HSP 1 Score: 191.4 bits (485), Expect = 6.800e-45
Identity = 132/362 (36.46%), Postives = 171/362 (47.24%), Query Frame = 0
Query:    9 YADLLASLRVSTFLLAVHGDAVRSSLHAHTLPPSNVATLREACFALGELAPLVFRASSENPFTNTSRSGMNVGNDNTAAME---------SLSLAPLSFPS-QLTQPTTTAGPSSPPSGVPHHHYNHYIRCPIASPHSFPTIAFLPDGVLIKIFTFLSGSRSTEMDEEKEDDEDGRRGGTEVRREEGAFVG------SHRYAREQLGSLREVSSRWASLAAVDELWAPIVSALWPVTRCFL------------------------ASSRCPPRPLAGGQRTYHGVCVYRGRGLVEPGLLIVTPQWQARYRLRFDMHDRRDGLSLFSGEGELVYQEWHNHQEHRTILRLGAGSSVATTPFSAS 331
            Y DLLASL+V+  L  + G A+R+S+ A T+P ++VATL E+C  L +   L+  AS+  P  N         N    +M          SL +AP   PS     PT       P          H    P+ +  S   I  LPD VLI + ++L+G                  G  E     G  V       SH+  R QLG +R V+ RW+ +   DELW P+V ALWPVT+                           AS    P     G  ++H +C+ RGR +V PGL +VTPQW ARYRL F + + R  + LFSGEG LV QEW NH EHRTILRLG G++V TT FSAS
Sbjct:   25 YKDLLASLQVTCLLYTLQGHALRTSIEAQTIPIADVATLLESCSTLQD---LISFASTSFPCRNADNKDGRCTNQTNESMTSASRMMGALSLRVAPSPHPSASFVHPTPRDDCQRPTCA-------HNSHAPLPTSIS---IGSLPDSVLINVISYLTG------------------GARETTDPAGGHVSHAFHNLSHKEIRVQLGDIRAVALRWSVVGTADELWEPVVLALWPVTQSLXXXXXXXXXXXXXXXSLEGPSANGSASLGLYPSWRFHGTHSFHELCLRRGRAIVNPGLCLVTPQWSARYRLHFHIFEERHSIPLFSGEGPLVCQEWQNHHEHRTILRLGPGAAVVTTTFSAS 355          
BLAST of NO23G01870 vs. NCBI_GenBank
Match: XP_005853741.1 (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EKU22622.1 hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EWM30397.1 hypothetical protein Naga_100026g9 [Nannochloropsis gaditana])

HSP 1 Score: 79.0 bits (193), Expect = 4.900e-11
Identity = 81/310 (26.13%), Postives = 118/310 (38.06%), Query Frame = 0
Query:  195 REQLGSLREVSSRWASLAAVDELWAPIVSALWP------------------------VTRCFL----ASSRCPPRPLAGGQRTYH-GVCVYRGRGLVEPGLLIVTPQWQARYRLRFDMHDRRDGLSLFSGEGELVYQEWHNHQEHRTILRLGAGSSVATTPFSASTRCGARESHEGGXXXXXXXXXXXXXADDIRRYFQRSSSTH---GLCIRVTAIDQRTGREALIYESSARTERHCQDAAQGWPVPPHSLAITDHAGTWICAKGSGAASLHPMRTLFDFTIIPVGFTPHAAGEGGEEDVVAGERMYEV 473
            R+QLG L  V  +W  LA  D  W P+V  L+P                        +T   +    A +   P    GG+  +H    +  GR L +    I    W     L FD+HD +DG  LFS  G + +          T ++L       T PFSA++R                          I   FQ   S        IRVTA D+RTG+ AL++ S+ RT+R  +   +   VP  +L + +   + +    +  A    M+ L  F + PV        EG  E + A ER+Y V
Sbjct:  258 RKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRP--IRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFT--GTTIPGITAMKLTGRRRRVTAPFSAASR-----------------DRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTL-LVNQGWSRVTIPSTDLA----MQMLTVFYVAPV--------EGQPETISAAERLYSV 533          
BLAST of NO23G01870 vs. NCBI_GenBank
Match: EWM22815.1 (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana])

HSP 1 Score: 72.8 bits (177), Expect = 3.500e-9
Identity = 101/395 (25.57%), Postives = 147/395 (37.22%), Query Frame = 0
Query:   97 SFPSQLTQPTTTAGPSSPPSGVPHHH--YNHYIRCPIASP--HSFPTIAFLPDGVLIKIFTFLSGSRSTEMDEEKEDDEDGRRGGTEVRREEGAFVGSHRYAREQLGSLREVSSRWASLAAVDELWAPIVS----------------ALWPVTRCFLASSRCPPRPLAGGQRTYHGVCVYRGRGLVEPGLLIVTPQWQARYRLRFDMHDRRDGLSLFSGEGELVYQEWHNHQEHRTILRL-GAGSSVATTPFSASTRCGARESHEGGXXXXXXXXXXXXXADDIRRYF---QRSSSTHGLCIRVTAIDQRTGREALIYESSARTERHCQDAAQG-WP--VPPHSLAITDHAGTWICAKGSGAASLHPMRTLFDFTIIPVGFTP--HAAGEGGEED 463
            S  S   Q + T    SPP  +  H   Y  +    I S   HSFPT       +L +IF+FL     T      E   +G      +    G+   + +  R  L  L  V+  W + A+ D  W PIVS                  +P  + FL  +RC   P+ G                          +W A   L F+++D +D + LF   G L  +   + +   T LRL G   S    PFSA +R    +  E                 +I  Y     R     GL +RV A D RTG +ALIY S  +T+R  +D+    W   +P HSL + +    W+   G+  A    +     F + PV  +P   A+  G  E+
Sbjct:  170 SSTSATQQKSITPFCKSPPPKLKDHRDAYGVHGAGKIRSTPLHSFPTDPLATPSLLTEIFSFL----GTVAPYGAEPVLNGSGHPCRMSAGPGSETTALQAVRVNLAPLLTVARLWRATASQDRFWRPIVSWTLPTLTMDAKETRTTKPFPYRQAFLRYARCLALPVVGDGE-----------------------EWHAHVLLSFEIYDVQDSMRLFVASGPL--EVIQSTESGLTALRLTGTKRSEVCRPFSAKSRDPVNKRFE-----------------NISAYLCHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVWEAWSRWVLQNGTQEA----VEISTSFYVSPVQKSPVSSASSTGSAEE 514          
The following BLAST results are available for this feature:
BLAST of NO23G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM27826.16.800e-4536.46hypothetical protein Naga_100074g3 [Nannochloropsi... [more]
XP_005853741.14.900e-1126.13hypothetical protein NGA_0168202 [Nannochloropsis ... [more]
EWM22815.13.500e-925.57hypothetical protein Naga_100437g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL035nonsL035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR126ngnoR126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007508NSK007508Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01870.1NO23G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100074g3gene2719Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01870.1NO23G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01870 ID=NO23G01870|Name=NO23G01870|organism=Nannochloropsis oceanica|type=gene|length=2013bp
ATGGCCTCAGAACCACCACCGCTTTACGCGGACCTCTTAGCATCCCTGCG
GGTGTCAACATTCCTCCTTGCCGTGCACGGCGACGCGGTGCGCTCATCTC
TTCACGCCCACACTCTCCCTCCCTCCAATGTCGCGACGCTGCGCGAGGCC
TGCTTCGCGTTAGGAGAGCTCGCTCCTCTCGTCTTCCGGGCCTCGTCGGA
GAATCCGTTTACAAACACAAGCAGAAGTGGCATGAATGTCGGAAATGACA
ATACGGCCGCGATGGAGAGCCTGTCTCTTGCCCCGCTCTCCTTCCCTTCG
CAACTCACACAACCCACCACGACGGCTGGTCCCTCGTCCCCTCCATCCGG
TGTTCCCCATCACCACTACAACCACTACATCAGATGCCCTATTGCATCCC
CCCACTCTTTCCCTACCATTGCCTTCCTGCCCGACGGAGTGCTCATCAAA
ATATTCACATTCCTTAGCGGCAGCAGGAGCACCGAAATGGATGAAGAGAA
AGAGGATGACGAAGACGGGAGGAGGGGCGGGACGGAAGTACGGAGAGAGG
AAGGTGCATTCGTTGGTTCGCACAGGTATGCGCGCGAGCAGTTGGGGTCT
CTCCGCGAGGTATCCTCCAGGTGGGCTTCTCTTGCCGCTGTCGATGAGCT
TTGGGCCCCTATTGTCTCGGCCTTGTGGCCAGTGACTCGGTGTTTCCTGG
CATCCTCTAGGTGTCCTCCTCGTCCCCTTGCGGGGGGGCAGAGGACCTAT
CATGGCGTGTGTGTGTATCGCGGTCGAGGGCTTGTGGAGCCTGGTTTGTT
GATAGTCACGCCACAGTGGCAAGCCAGgtgggaagaggcgggggaagcag
gagggagagaaagggagggagagagggaggcagggggcacaaacagtagg
agaagggggtgatgcctctctcttttcttccgtgtacctcagacaatact
cacctaatcatccctccctgcctttcttttcccctccattcctctgtccg
taaagGTACCGGCTCCGCTTCGACATGCACGACCGACGCGATGGCCTTTC
TCTCTTCTCAGGCGAAGGGGAGCTAGTCTATCAGGAGTGGCACAATCATC
AGGAGCACAGGACTATTCTCCGTCTGGGCGCAGGCTCCTCTGTTGCGACC
ACTCCCTTTTCGGCCTCGACCCGATGTGGAGCGCGTGAGAGTCATGAGGG
AGGAGGAGGGGCAGCGGGGACGGGAGCAGGGGTGGGAGAGGGGGCTGATG
ATATAAGGCGGTATTTCCAACGgtaggtgcttctgctcatccgcctcttt
caatttcttcactcctcctttatcgtacgaaagccctctttcgcatgctg
atcgctgatcgtatgccacaaagaccatgtgatcatcttctgtcccccac
tggtcctccttccttcgcttcctcccatcctccgaacccactcatttata
gCAGCTCCTCCACGCACGGGCTTTGTATCCGTGTGACTGCCATCGATCAA
AGGACTGGGCGTGAGGCCCTAATCTATGAGTCGTCAGgtgggcgtcgccc
tcccttctgccctgcctgtctcccttcctctctttttttatcatgatgta
aacccatctcgctatttttttgtatttatcccatacacttttccttctgt
ctttcagCCCGAACCGAACGTCACTGTCAAGACGCCGCGCAAGGCTGGCC
TGTCCCTCCCCACTCGCTGGCTATCACTGACCACGCCGGCACCTGGATCT
GTGCCAAAGGGAGCGGGGCTGCCTCCCTCCATCCAATGCGCACTCTTTTT
GACTTCACCATTATTCCTGTTGGCTTCACCCCACATGCGGCAGGGGAGGG
AGGGGAGGAGGATGTGGTGGCAGGTGAGAGGATGTATGAGGTACATTCGG
CACGGATCGATCCCCCGACCAATACGATTTCACACAAGGGTATTGTGGGC
CTCGTGTTCTTAGGACATGTGCACGAGGTTGGCTTGTTATTGGCGTCCTT
GAATTGGGTGTAG
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protein sequence of NO23G01870.1

>NO23G01870.1-protein ID=NO23G01870.1-protein|Name=NO23G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MASEPPPLYADLLASLRVSTFLLAVHGDAVRSSLHAHTLPPSNVATLREA
CFALGELAPLVFRASSENPFTNTSRSGMNVGNDNTAAMESLSLAPLSFPS
QLTQPTTTAGPSSPPSGVPHHHYNHYIRCPIASPHSFPTIAFLPDGVLIK
IFTFLSGSRSTEMDEEKEDDEDGRRGGTEVRREEGAFVGSHRYAREQLGS
LREVSSRWASLAAVDELWAPIVSALWPVTRCFLASSRCPPRPLAGGQRTY
HGVCVYRGRGLVEPGLLIVTPQWQARYRLRFDMHDRRDGLSLFSGEGELV
YQEWHNHQEHRTILRLGAGSSVATTPFSASTRCGARESHEGGGGAAGTGA
GVGEGADDIRRYFQRSSSTHGLCIRVTAIDQRTGREALIYESSARTERHC
QDAAQGWPVPPHSLAITDHAGTWICAKGSGAASLHPMRTLFDFTIIPVGF
TPHAAGEGGEEDVVAGERMYEVHSARIDPPTNTISHKGIVGLVFLGHVHE
VGLLLASLNWV*
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Synonyms
Publications