NO23G01870, NO23G01870 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO23G01870 vs. NCBI_GenBank
Match: EWM27826.1 (hypothetical protein Naga_100074g3 [Nannochloropsis gaditana] >EWM27827.1 hypothetical protein Naga_100074g3 [Nannochloropsis gaditana]) HSP 1 Score: 191.4 bits (485), Expect = 6.800e-45 Identity = 132/362 (36.46%), Postives = 171/362 (47.24%), Query Frame = 0 Query: 9 YADLLASLRVSTFLLAVHGDAVRSSLHAHTLPPSNVATLREACFALGELAPLVFRASSENPFTNTSRSGMNVGNDNTAAME---------SLSLAPLSFPS-QLTQPTTTAGPSSPPSGVPHHHYNHYIRCPIASPHSFPTIAFLPDGVLIKIFTFLSGSRSTEMDEEKEDDEDGRRGGTEVRREEGAFVG------SHRYAREQLGSLREVSSRWASLAAVDELWAPIVSALWPVTRCFL------------------------ASSRCPPRPLAGGQRTYHGVCVYRGRGLVEPGLLIVTPQWQARYRLRFDMHDRRDGLSLFSGEGELVYQEWHNHQEHRTILRLGAGSSVATTPFSAS 331 Y DLLASL+V+ L + G A+R+S+ A T+P ++VATL E+C L + L+ AS+ P N N +M SL +AP PS PT P H P+ + S I LPD VLI + ++L+G G E G V SH+ R QLG +R V+ RW+ + DELW P+V ALWPVT+ AS P G ++H +C+ RGR +V PGL +VTPQW ARYRL F + + R + LFSGEG LV QEW NH EHRTILRLG G++V TT FSAS Sbjct: 25 YKDLLASLQVTCLLYTLQGHALRTSIEAQTIPIADVATLLESCSTLQD---LISFASTSFPCRNADNKDGRCTNQTNESMTSASRMMGALSLRVAPSPHPSASFVHPTPRDDCQRPTCA-------HNSHAPLPTSIS---IGSLPDSVLINVISYLTG------------------GARETTDPAGGHVSHAFHNLSHKEIRVQLGDIRAVALRWSVVGTADELWEPVVLALWPVTQSLXXXXXXXXXXXXXXXSLEGPSANGSASLGLYPSWRFHGTHSFHELCLRRGRAIVNPGLCLVTPQWSARYRLHFHIFEERHSIPLFSGEGPLVCQEWQNHHEHRTILRLGPGAAVVTTTFSAS 355
BLAST of NO23G01870 vs. NCBI_GenBank
Match: XP_005853741.1 (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EKU22622.1 hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EWM30397.1 hypothetical protein Naga_100026g9 [Nannochloropsis gaditana]) HSP 1 Score: 79.0 bits (193), Expect = 4.900e-11 Identity = 81/310 (26.13%), Postives = 118/310 (38.06%), Query Frame = 0 Query: 195 REQLGSLREVSSRWASLAAVDELWAPIVSALWP------------------------VTRCFL----ASSRCPPRPLAGGQRTYH-GVCVYRGRGLVEPGLLIVTPQWQARYRLRFDMHDRRDGLSLFSGEGELVYQEWHNHQEHRTILRLGAGSSVATTPFSASTRCGARESHEGGXXXXXXXXXXXXXADDIRRYFQRSSSTH---GLCIRVTAIDQRTGREALIYESSARTERHCQDAAQGWPVPPHSLAITDHAGTWICAKGSGAASLHPMRTLFDFTIIPVGFTPHAAGEGGEEDVVAGERMYEV 473 R+QLG L V +W LA D W P+V L+P +T + A + P GG+ +H + GR L + I W L FD+HD +DG LFS G + + T ++L T PFSA++R I FQ S IRVTA D+RTG+ AL++ S+ RT+R + + VP +L + + + + + A M+ L F + PV EG E + A ER+Y V Sbjct: 258 RKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRP--IRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFT--GTTIPGITAMKLTGRRRRVTAPFSAASR-----------------DRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTL-LVNQGWSRVTIPSTDLA----MQMLTVFYVAPV--------EGQPETISAAERLYSV 533
BLAST of NO23G01870 vs. NCBI_GenBank
Match: EWM22815.1 (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana]) HSP 1 Score: 72.8 bits (177), Expect = 3.500e-9 Identity = 101/395 (25.57%), Postives = 147/395 (37.22%), Query Frame = 0 Query: 97 SFPSQLTQPTTTAGPSSPPSGVPHHH--YNHYIRCPIASP--HSFPTIAFLPDGVLIKIFTFLSGSRSTEMDEEKEDDEDGRRGGTEVRREEGAFVGSHRYAREQLGSLREVSSRWASLAAVDELWAPIVS----------------ALWPVTRCFLASSRCPPRPLAGGQRTYHGVCVYRGRGLVEPGLLIVTPQWQARYRLRFDMHDRRDGLSLFSGEGELVYQEWHNHQEHRTILRL-GAGSSVATTPFSASTRCGARESHEGGXXXXXXXXXXXXXADDIRRYF---QRSSSTHGLCIRVTAIDQRTGREALIYESSARTERHCQDAAQG-WP--VPPHSLAITDHAGTWICAKGSGAASLHPMRTLFDFTIIPVGFTP--HAAGEGGEED 463 S S Q + T SPP + H Y + I S HSFPT +L +IF+FL T E +G + G+ + + R L L V+ W + A+ D W PIVS +P + FL +RC P+ G +W A L F+++D +D + LF G L + + + T LRL G S PFSA +R + E +I Y R GL +RV A D RTG +ALIY S +T+R +D+ W +P HSL + + W+ G+ A + F + PV +P A+ G E+ Sbjct: 170 SSTSATQQKSITPFCKSPPPKLKDHRDAYGVHGAGKIRSTPLHSFPTDPLATPSLLTEIFSFL----GTVAPYGAEPVLNGSGHPCRMSAGPGSETTALQAVRVNLAPLLTVARLWRATASQDRFWRPIVSWTLPTLTMDAKETRTTKPFPYRQAFLRYARCLALPVVGDGE-----------------------EWHAHVLLSFEIYDVQDSMRLFVASGPL--EVIQSTESGLTALRLTGTKRSEVCRPFSAKSRDPVNKRFE-----------------NISAYLCHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVWEAWSRWVLQNGTQEA----VEISTSFYVSPVQKSPVSSASSTGSAEE 514 The following BLAST results are available for this feature:
BLAST of NO23G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO23G01870 ID=NO23G01870|Name=NO23G01870|organism=Nannochloropsis oceanica|type=gene|length=2013bpback to top protein sequence of NO23G01870.1 >NO23G01870.1-protein ID=NO23G01870.1-protein|Name=NO23G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bpback to top Synonyms
Publications
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