NO23G01870.1, NO23G01870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01870.1
Unique NameNO23G01870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1536
Alignment locationchr23:671171..673183 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:671171..673183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01870.1 vs.
Match: EWM27826.1 (hypothetical protein Naga_100074g3 [Nannochloropsis gaditana]; EWM27827.1 hypothetical protein Naga_100074g3 [Nannochloropsis gaditana])

HSP 1 Score: 193.0 bits (489), Expect = 2.300e-45
Identity = 142/386 (36.79%), Postives = 184/386 (47.67%), Query Frame = 0 
Query:    9 YADLLASLRVSTFLLAVHGDAVRSSLHAHTLPPSNVATLREACFALGELAPLVFRASSENPFTNTSRSGMNVGNDNTAAMESLS---------LAPLSFPSQLTQPTTTAGPSSPPSGVPHHHYNHYIRCPIASPHSFPTIAFLPDGVLIKIFTFLSGSRSTEMDEEKEDDEDGRRGGTEVRREEGAFVG------SHRYAREQLGSLREVSSRWASLAAVDELWAPIVSALWPVTRCF-------LASSRCPPR---PLAGGQ--------------RTYHGVCVYRGRGLVEPGLLIVTPQWQARYRLRFDMHDRRDGLSLFSGEGELVYQEWHNHQEHRTILRLGAGSSVATTPFSASTRCGARESHEGGGGAAGTGAGVGEG 356
            Y DLLASL+V+  L  + G A+R+S+ A T+P ++VATL E+C  L +L      AS+  P  N         N    +M S S         +AP   PS      T       P+   + H       P+ +  S   I  LPD VLI + ++L+G                  G  E     G  V       SH+  R QLG +R V+ RW+ +   DELW P+V ALWPVT+         L+ S C      P A G                ++H +C+ RGR +V PGL +VTPQW ARYRL F + + R  + LFSGEG LV QEW NH EHRTILRLG G++V TT FSAS  CG      GGG   G G+  G G
Sbjct:   25 YKDLLASLQVTCLLYTLQGHALRTSIEAQTIPIADVATLLESCSTLQDLISF---ASTSFPCRNADNKDGRCTNQTNESMTSASRMMGALSLRVAPSPHPSASFVHPTPRDDCQRPTCAHNSH------APLPTSIS---IGSLPDSVLINVISYLTG------------------GARETTDPAGGHVSHAFHNLSHKEIRVQLGDIRAVALRWSVVGTADELWEPVVLALWPVTQSLSPSLLPSLSPSMCRSSLEGPSANGSASLGLYPSWRFHGTHSFHELCLRRGRAIVNPGLCLVTPQWSARYRLHFHIFEERHSIPLFSGEGPLVCQEWQNHHEHRTILRLGPGAAVVTTTFSAS-GCG---GGVGGGDVEGDGSAGGRG 376
The following BLAST results are available for this feature:
BLAST of NO23G01870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27826.12.300e-4536.79hypothetical protein Naga_100074g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01870NO23G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01870.1NO23G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01870.1.cds1NO23G01870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01870.1.cds2NO23G01870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01870.1.cds3NO23G01870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01870.1.cds4NO23G01870.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01870.1 ID=NO23G01870.1|Name=NO23G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp
ATGGCCTCAGAACCACCACCGCTTTACGCGGACCTCTTAGCATCCCTGCG
GGTGTCAACATTCCTCCTTGCCGTGCACGGCGACGCGGTGCGCTCATCTC
TTCACGCCCACACTCTCCCTCCCTCCAATGTCGCGACGCTGCGCGAGGCC
TGCTTCGCGTTAGGAGAGCTCGCTCCTCTCGTCTTCCGGGCCTCGTCGGA
GAATCCGTTTACAAACACAAGCAGAAGTGGCATGAATGTCGGAAATGACA
ATACGGCCGCGATGGAGAGCCTGTCTCTTGCCCCGCTCTCCTTCCCTTCG
CAACTCACACAACCCACCACGACGGCTGGTCCCTCGTCCCCTCCATCCGG
TGTTCCCCATCACCACTACAACCACTACATCAGATGCCCTATTGCATCCC
CCCACTCTTTCCCTACCATTGCCTTCCTGCCCGACGGAGTGCTCATCAAA
ATATTCACATTCCTTAGCGGCAGCAGGAGCACCGAAATGGATGAAGAGAA
AGAGGATGACGAAGACGGGAGGAGGGGCGGGACGGAAGTACGGAGAGAGG
AAGGTGCATTCGTTGGTTCGCACAGGTATGCGCGCGAGCAGTTGGGGTCT
CTCCGCGAGGTATCCTCCAGGTGGGCTTCTCTTGCCGCTGTCGATGAGCT
TTGGGCCCCTATTGTCTCGGCCTTGTGGCCAGTGACTCGGTGTTTCCTGG
CATCCTCTAGGTGTCCTCCTCGTCCCCTTGCGGGGGGGCAGAGGACCTAT
CATGGCGTGTGTGTGTATCGCGGTCGAGGGCTTGTGGAGCCTGGTTTGTT
GATAGTCACGCCACAGTGGCAAGCCAGGTACCGGCTCCGCTTCGACATGC
ACGACCGACGCGATGGCCTTTCTCTCTTCTCAGGCGAAGGGGAGCTAGTC
TATCAGGAGTGGCACAATCATCAGGAGCACAGGACTATTCTCCGTCTGGG
CGCAGGCTCCTCTGTTGCGACCACTCCCTTTTCGGCCTCGACCCGATGTG
GAGCGCGTGAGAGTCATGAGGGAGGAGGAGGGGCAGCGGGGACGGGAGCA
GGGGTGGGAGAGGGGGCTGATGATATAAGGCGGTATTTCCAACGCAGCTC
CTCCACGCACGGGCTTTGTATCCGTGTGACTGCCATCGATCAAAGGACTG
GGCGTGAGGCCCTAATCTATGAGTCGTCAGCCCGAACCGAACGTCACTGT
CAAGACGCCGCGCAAGGCTGGCCTGTCCCTCCCCACTCGCTGGCTATCAC
TGACCACGCCGGCACCTGGATCTGTGCCAAAGGGAGCGGGGCTGCCTCCC
TCCATCCAATGCGCACTCTTTTTGACTTCACCATTATTCCTGTTGGCTTC
ACCCCACATGCGGCAGGGGAGGGAGGGGAGGAGGATGTGGTGGCAGGTGA
GAGGATGTATGAGGTACATTCGGCACGGATCGATCCCCCGACCAATACGA
TTTCACACAAGGGTATTGTGGGCCTCGTGTTCTTAGGACATGTGCACGAG
GTTGGCTTGTTATTGGCGTCCTTGAATTGGGTGTAG
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protein sequence of NO23G01870.1

>NO23G01870.1-protein ID=NO23G01870.1-protein|Name=NO23G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MASEPPPLYADLLASLRVSTFLLAVHGDAVRSSLHAHTLPPSNVATLREA
CFALGELAPLVFRASSENPFTNTSRSGMNVGNDNTAAMESLSLAPLSFPS
QLTQPTTTAGPSSPPSGVPHHHYNHYIRCPIASPHSFPTIAFLPDGVLIK
IFTFLSGSRSTEMDEEKEDDEDGRRGGTEVRREEGAFVGSHRYAREQLGS
LREVSSRWASLAAVDELWAPIVSALWPVTRCFLASSRCPPRPLAGGQRTY
HGVCVYRGRGLVEPGLLIVTPQWQARYRLRFDMHDRRDGLSLFSGEGELV
YQEWHNHQEHRTILRLGAGSSVATTPFSASTRCGARESHEGGGGAAGTGA
GVGEGADDIRRYFQRSSSTHGLCIRVTAIDQRTGREALIYESSARTERHC
QDAAQGWPVPPHSLAITDHAGTWICAKGSGAASLHPMRTLFDFTIIPVGF
TPHAAGEGGEEDVVAGERMYEVHSARIDPPTNTISHKGIVGLVFLGHVHE
VGLLLASLNWV*
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mRNA from alignment at chr23:671171..673183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01870.1 ID=NO23G01870.1|Name=NO23G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2013bp|location=Sequence derived from alignment at chr23:671171..673183- (Nannochloropsis oceanica)
ATGGCCTCAGAACCACCACCGCTTTACGCGGACCTCTTAGCATCCCTGCG
GGTGTCAACATTCCTCCTTGCCGTGCACGGCGACGCGGTGCGCTCATCTC
TTCACGCCCACACTCTCCCTCCCTCCAATGTCGCGACGCTGCGCGAGGCC
TGCTTCGCGTTAGGAGAGCTCGCTCCTCTCGTCTTCCGGGCCTCGTCGGA
GAATCCGTTTACAAACACAAGCAGAAGTGGCATGAATGTCGGAAATGACA
ATACGGCCGCGATGGAGAGCCTGTCTCTTGCCCCGCTCTCCTTCCCTTCG
CAACTCACACAACCCACCACGACGGCTGGTCCCTCGTCCCCTCCATCCGG
TGTTCCCCATCACCACTACAACCACTACATCAGATGCCCTATTGCATCCC
CCCACTCTTTCCCTACCATTGCCTTCCTGCCCGACGGAGTGCTCATCAAA
ATATTCACATTCCTTAGCGGCAGCAGGAGCACCGAAATGGATGAAGAGAA
AGAGGATGACGAAGACGGGAGGAGGGGCGGGACGGAAGTACGGAGAGAGG
AAGGTGCATTCGTTGGTTCGCACAGGTATGCGCGCGAGCAGTTGGGGTCT
CTCCGCGAGGTATCCTCCAGGTGGGCTTCTCTTGCCGCTGTCGATGAGCT
TTGGGCCCCTATTGTCTCGGCCTTGTGGCCAGTGACTCGGTGTTTCCTGG
CATCCTCTAGGTGTCCTCCTCGTCCCCTTGCGGGGGGGCAGAGGACCTAT
CATGGCGTGTGTGTGTATCGCGGTCGAGGGCTTGTGGAGCCTGGTTTGTT
GATAGTCACGCCACAGTGGCAAGCCAGGTGGGAAGAGGCGGGGGAAGCAG
GAGGGAGAGAAAGGGAGGGAGAGAGGGAGGCAGGGGGCACAAACAGTAGG
AGAAGGGGGTGATGCCTCTCTCTTTTCTTCCGTGTACCTCAGACAATACT
CACCTAATCATCCCTCCCTGCCTTTCTTTTCCCCTCCATTCCTCTGTCCG
TAAAGGTACCGGCTCCGCTTCGACATGCACGACCGACGCGATGGCCTTTC
TCTCTTCTCAGGCGAAGGGGAGCTAGTCTATCAGGAGTGGCACAATCATC
AGGAGCACAGGACTATTCTCCGTCTGGGCGCAGGCTCCTCTGTTGCGACC
ACTCCCTTTTCGGCCTCGACCCGATGTGGAGCGCGTGAGAGTCATGAGGG
AGGAGGAGGGGCAGCGGGGACGGGAGCAGGGGTGGGAGAGGGGGCTGATG
ATATAAGGCGGTATTTCCAACGGTAGGTGCTTCTGCTCATCCGCCTCTTT
CAATTTCTTCACTCCTCCTTTATCGTACGAAAGCCCTCTTTCGCATGCTG
ATCGCTGATCGTATGCCACAAAGACCATGTGATCATCTTCTGTCCCCCAC
TGGTCCTCCTTCCTTCGCTTCCTCCCATCCTCCGAACCCACTCATTTATA
GCAGCTCCTCCACGCACGGGCTTTGTATCCGTGTGACTGCCATCGATCAA
AGGACTGGGCGTGAGGCCCTAATCTATGAGTCGTCAGGTGGGCGTCGCCC
TCCCTTCTGCCCTGCCTGTCTCCCTTCCTCTCTTTTTTTATCATGATGTA
AACCCATCTCGCTATTTTTTTGTATTTATCCCATACACTTTTCCTTCTGT
CTTTCAGCCCGAACCGAACGTCACTGTCAAGACGCCGCGCAAGGCTGGCC
TGTCCCTCCCCACTCGCTGGCTATCACTGACCACGCCGGCACCTGGATCT
GTGCCAAAGGGAGCGGGGCTGCCTCCCTCCATCCAATGCGCACTCTTTTT
GACTTCACCATTATTCCTGTTGGCTTCACCCCACATGCGGCAGGGGAGGG
AGGGGAGGAGGATGTGGTGGCAGGTGAGAGGATGTATGAGGTACATTCGG
CACGGATCGATCCCCCGACCAATACGATTTCACACAAGGGTATTGTGGGC
CTCGTGTTCTTAGGACATGTGCACGAGGTTGGCTTGTTATTGGCGTCCTT
GAATTGGGTGTAG
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Coding sequence (CDS) from alignment at chr23:671171..673183-

>NO23G01870.1 ID=NO23G01870.1|Name=NO23G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr23:671171..673183- (Nannochloropsis oceanica)
ATGGCCTCAGAACCACCACCGCTTTACGCGGACCTCTTAGCATCCCTGCG
GGTGTCAACATTCCTCCTTGCCGTGCACGGCGACGCGGTGCGCTCATCTC
TTCACGCCCACACTCTCCCTCCCTCCAATGTCGCGACGCTGCGCGAGGCC
TGCTTCGCGTTAGGAGAGCTCGCTCCTCTCGTCTTCCGGGCCTCGTCGGA
GAATCCGTTTACAAACACAAGCAGAAGTGGCATGAATGTCGGAAATGACA
ATACGGCCGCGATGGAGAGCCTGTCTCTTGCCCCGCTCTCCTTCCCTTCG
CAACTCACACAACCCACCACGACGGCTGGTCCCTCGTCCCCTCCATCCGG
TGTTCCCCATCACCACTACAACCACTACATCAGATGCCCTATTGCATCCC
CCCACTCTTTCCCTACCATTGCCTTCCTGCCCGACGGAGTGCTCATCAAA
ATATTCACATTCCTTAGCGGCAGCAGGAGCACCGAAATGGATGAAGAGAA
AGAGGATGACGAAGACGGGAGGAGGGGCGGGACGGAAGTACGGAGAGAGG
AAGGTGCATTCGTTGGTTCGCACAGGTATGCGCGCGAGCAGTTGGGGTCT
CTCCGCGAGGTATCCTCCAGGTGGGCTTCTCTTGCCGCTGTCGATGAGCT
TTGGGCCCCTATTGTCTCGGCCTTGTGGCCAGTGACTCGGTGTTTCCTGG
CATCCTCTAGGTGTCCTCCTCGTCCCCTTGCGGGGGGGCAGAGGACCTAT
CATGGCGTGTGTGTGTATCGCGGTCGAGGGCTTGTGGAGCCTGGTTTGTT
GATAGTCACGCCACAGTGGCAAGCCAGGTACCGGCTCCGCTTCGACATGC
ACGACCGACGCGATGGCCTTTCTCTCTTCTCAGGCGAAGGGGAGCTAGTC
TATCAGGAGTGGCACAATCATCAGGAGCACAGGACTATTCTCCGTCTGGG
CGCAGGCTCCTCTGTTGCGACCACTCCCTTTTCGGCCTCGACCCGATGTG
GAGCGCGTGAGAGTCATGAGGGAGGAGGAGGGGCAGCGGGGACGGGAGCA
GGGGTGGGAGAGGGGGCTGATGATATAAGGCGGTATTTCCAACGCAGCTC
CTCCACGCACGGGCTTTGTATCCGTGTGACTGCCATCGATCAAAGGACTG
GGCGTGAGGCCCTAATCTATGAGTCGTCAGCCCGAACCGAACGTCACTGT
CAAGACGCCGCGCAAGGCTGGCCTGTCCCTCCCCACTCGCTGGCTATCAC
TGACCACGCCGGCACCTGGATCTGTGCCAAAGGGAGCGGGGCTGCCTCCC
TCCATCCAATGCGCACTCTTTTTGACTTCACCATTATTCCTGTTGGCTTC
ACCCCACATGCGGCAGGGGAGGGAGGGGAGGAGGATGTGGTGGCAGGTGA
GAGGATGTATGAGGTACATTCGGCACGGATCGATCCCCCGACCAATACGA
TTTCACACAAGGGTATTGTGGGCCTCGTGTTCTTAGGACATGTGCACGAG
GTTGGCTTGTTATTGGCGTCCTTGAATTGGGTGTAG
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Synonyms
Publications