NO23G01410, NO23G01410 (gene) Nannochloropsis oceanica

Overview
NameNO23G01410
Unique NameNO23G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2489
Alignment locationchr23:512593..515081 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:512593..515081 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO23G01410 vs. NCBI_GenBank
Match: EWM22909.1 (hypothetical protein Naga_100625g2 [Nannochloropsis gaditana])

HSP 1 Score: 119.8 bits (299), Expect = 1.000e-23
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 0 
Query:  116 DGTKLKMLINCFAWYLPDAAYRGDNSKVHGCDESTIQFCKTDSGNNDHMCKFDGSNHLRD--------ARGENPACYFNCQMETCDSWGSPSTDATRACVAAL 211
            +G KLKMLI+CFA Y+ DA+YR DNSK  GC ++ I +C+TDSG NDH C+FDG+N+L D         +   P C+FNCQMETC++W  P  +    CVAAL
Sbjct:   35 NGEKLKMLIDCFASYMEDASYRADNSKRDGCTDAEILYCRTDSGYNDHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWEFPHNEEQEKCVAAL 137
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BLAST of NO23G01410 vs. NCBI_GenBank
Match: XP_005855369.1 (hypothetical protein NGA_0118000 [Nannochloropsis gaditana CCMP526] >EKU20987.1 hypothetical protein NGA_0118000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-7
Identity = 38/103 (36.89%), Postives = 48/103 (46.60%), Query Frame = 0 
Query:  116 DGTKLKMLINCFAWYLPDAAYRGDNSKVHGCDESTIQFCKTDSGNNDHMCKFDGSNHLRD--------ARGENPACYFNCQMETCDSWGSPSTDATRACVAAL 211
            +G KLKMLI+CFA                             SG  DH C+FDG+N+L D         +   P C+FNCQMETC++W  P  +    CVAAL
Sbjct:   35 NGEKLKMLIDCFA-----------------------------SGYKDHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWEFPHNEEQEKCVAAL 108
The following BLAST results are available for this feature:
BLAST of NO23G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22909.11.000e-2352.43hypothetical protein Naga_100625g2 [Nannochloropsi... [more]
XP_005855369.11.000e-736.89hypothetical protein NGA_0118000 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01410.1NO23G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO23G01410.2NO23G01410.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608752gene_10052Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01410.1NO23G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO23G01410.2NO23G01410.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01410 ID=NO23G01410|Name=NO23G01410|organism=Nannochloropsis oceanica|type=gene|length=2489bp
CCACGGATTACGATCCAAAAAACAGCTCCTATCAAGGTGACGCCCTGGCA
TAGGTGTCCATCCATCGCCCCGCGGACACAAATTAAGAACCCTCTTCCCC
TCCTCCATGCAATGAATACTAAATCCTAGAATGTGCTTTTCAGGGTTTAT
TCATGGGTGCTGGTCCAGCATAAAAATATCACTCCGGAATATACATCTAT
TAAAAAATGCACACGCACGCATGTAGCACCTCAAGACCGCAATACCATGA
ACACGAATTAGATTCTGCTGTATCCTCAATTGATATTTTGCCTCTCAAGC
ACAACGGTGGTAGTATATGGTGGTTTTAATTCCAAGCGTGATTCGATCAA
AGGGATAGGGCTCGCTGTCTGTGTTGAGGGATATGGTCGAAACCCGCGGC
CCAGCCCATCTTTCCAGGGCCTTGCGCTGTGTGTGTATCTCTGACTGTCT
GACACGTGTCCGTAGCTTGGCATCATATGACTGCTTTTTAAGCTAGTACT
AAGGCTGGCAAAGCTCCTTTGCGCCATTCAGACTCGTCCAGACCTTCATC
ATCGATCGTACAATATCTCACGCTCCAATAACATATCCATCTTGCTCCCA
TCCACCCTCCACACGATGCACACACCGCACCCATACACAACGCAGCTACA
AGGCTCATTCAGTATTCAAACAACCATGCGCATTTTTCTTCCCCTCGCCC
TCTTTGCCGCCATGGCCCTGACTTTTACCGCCGCCGTGGAAGACCCCCAG
CAAGACACTTCCGCCGCTCCTGCTGCCCCGGCTACTTCTGACACGCCCGT
GGACCCTGCTGCTGTCCCTGAGGTCCCTGCAACGCCTGCAGgtgagctca
ttcctacatcaatcatttctttatcccctcaacatcgtccattcatatat
actcctgtattttattcaaatctgctcgtacatttgcctgtgtctgctgg
catcaatttcctccgcttaaagctgtcgatccatccctccacatcagcgg
tccctgcgacatctgtgggtacaccatgagtgacatggatgaaatagatt
gagagggatcaacaaacggggggttagtccgtagaaaatgccaacttgca
gggaattaatgtatccctccctcccttccttccttcctccctctccccct
ccctccctttctcgtgtctgttgttcccgaaatcccagCTACGACATCCA
CCGCGTCTGAGGCCCGCCCTCATAAATCAGACGACCCCAAGCTGCGAGGA
ACTGAGCCTGAGGgtgagttgaaggggggaagagagcgaggggggggcag
cgagggaaggagggaaggaatgtgactgcgtctggggcacttatattctt
agagtggcatcttctccccctttggcctatgtgccgtgttgttgcattgg
caactgcccttggttatgatccatcctgtaataccttccttccttgcata
taactccctccctccctagATGCCCTGCCTGCCCCGGCTCCGGTCGAGAA
GGATATAGGTCCCGACGGCACCAAGCTCAAGATGTTGATCAATTGCTTTG
CCTGgtaatagatcgagggaagggaggagggagggaggtttggagggtaa
gagagaggagagagaattttccctcgtgctgaaatgagagatgggtcctc
tacatgcaccccttatacctacctgtccctccctgcctccctctaccctc
cctccctccccttttcctttctttccaagGTATCTGCCCGATGCTGCCTA
TCGAGGAGACAATAGCAAGGTCCACGGGTGCGACGAATCGACCATTCAGg
tgagtcctcttccttccctccctccctccctccctccccttctcgctacc
ttcctaccctacccactcccatcttccgatccataaaaaatgtctcagtc
gtcccctccctccgtcctcttccccctccttcgatccctcctcccctccc
tccctccctccctcatcagTTCTGCAAGACGGATAGCGGGAACAACGACC
ACATGTGCAAATTCGACGGCTCCAATCACTTGCGGGTGAGGGCGGGAGAG
CGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGATTGAGTTGTCGTCATTC
GCTCATCCTTCATTCCCTCCCTCCCTCCCCTCCTCACTCCCTCTCCCGCA
GGATGCTCGGGGCGAAAATCCCGCCTGCTACTTCAATTGCCAGGTAAAGC
CATCACCGTCTTCCCTTCCTTCGCTCTTTTCCTCCATCACCGTCTTCCCT
TCCTTCCTTCCTTCGCTCTTTTCCTCCTCATTCCTTTCGTCTTAACCCTT
TCCCCGCTGCTTTTGCCCCTCCCTCCCTTTCTGCCTCCCCCCCTCCTCGT
CGTTCTCCCCCTCCCTAGATGGAGACCTGTGACAGCTGGGGAAGTCCCTC
CACAGATGCCACCAGAGCCTGTGTCGCCGCTTTAGGCCATTAGAAAAAAT
ATGAGACTGGAAGGAGAGCAGGAGGGAGGGAGGGAGGGA
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protein sequence of NO23G01410.1

>NO23G01410.1-protein ID=NO23G01410.1-protein|Name=NO23G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MHTPHPYTTQLQGSFSIQTTMRIFLPLALFAAMALTFTAAVEDPQQDTSA
APAAPATSDTPVDPAAVPEVPATPAATTSTASEARPHKSDDPKLRGTEPE
DALPAPAPVEKDIGPDGTKLKMLINCFAWYLPDAAYRGDNSKVHGCDEST
IQFCKTDSGNNDHMCKFDGSNHLRDARGENPACYFNCQMETCDSWGSPST
DATRACVAALGH*
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protein sequence of NO23G01410.2

>NO23G01410.2-protein ID=NO23G01410.2-protein|Name=NO23G01410.2|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MHTPHPYTTQLQGSFSIQTTMRIFLPLALFAAMALTFTAAVEDPQQDTSA
APAAPATSDTPVDPAAVPEVPATPAATTSTASEARPHKSDDPKLRGTEPE
DALPAPAPVEKDIGPDGTKLKMLINCFAWYLPDAAYRGDNSKVHGCDEST
IQFCKTDSGNNDHMCKFDGSNHLRVRAGEREGGRKGGREGLSCRHSLILH
SLPPSPPHSLSRRMLGAKIPPATSIAR*
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Synonyms
Publications