NO23G01410.1, NO23G01410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01410.1
Unique NameNO23G01410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1300
Alignment locationchr23:512593..515081 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:512593..515081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01410.1 vs.
Match: EWM22909.1 (hypothetical protein Naga_100625g2 [Nannochloropsis gaditana])

HSP 1 Score: 119.8 bits (299), Expect = 1.000e-23
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 0 
Query:  116 DGTKLKMLINCFAWYLPDAAYRGDNSKVHGCDESTIQFCKTDSGNNDHMCKFDGSNHLRD--------ARGENPACYFNCQMETCDSWGSPSTDATRACVAAL 211
            +G KLKMLI+CFA Y+ DA+YR DNSK  GC ++ I +C+TDSG NDH C+FDG+N+L D         +   P C+FNCQMETC++W  P  +    CVAAL
Sbjct:   35 NGEKLKMLIDCFASYMEDASYRADNSKRDGCTDAEILYCRTDSGYNDHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWEFPHNEEQEKCVAAL 137
The following BLAST results are available for this feature:
BLAST of NO23G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22909.11.000e-2352.43hypothetical protein Naga_100625g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01410NO23G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01410.1NO23G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01410.1.cds1NO23G01410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01410.1.cds2NO23G01410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01410.1.cds3NO23G01410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01410.1.cds4NO23G01410.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01410.1.cds5NO23G01410.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01410.1.cds6NO23G01410.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01410.1.cds7NO23G01410.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01410.1 ID=NO23G01410.1|Name=NO23G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1300bp
CCACGGATTACGATCCAAAAAACAGCTCCTATCAAGGTGACGCCCTGGCA
TAGGTGTCCATCCATCGCCCCGCGGACACAAATTAAGAACCCTCTTCCCC
TCCTCCATGCAATGAATACTAAATCCTAGAATGTGCTTTTCAGGGTTTAT
TCATGGGTGCTGGTCCAGCATAAAAATATCACTCCGGAATATACATCTAT
TAAAAAATGCACACGCACGCATGTAGCACCTCAAGACCGCAATACCATGA
ACACGAATTAGATTCTGCTGTATCCTCAATTGATATTTTGCCTCTCAAGC
ACAACGGTGGTAGTATATGGTGGTTTTAATTCCAAGCGTGATTCGATCAA
AGGGATAGGGCTCGCTGTCTGTGTTGAGGGATATGGTCGAAACCCGCGGC
CCAGCCCATCTTTCCAGGGCCTTGCGCTGTGTGTGTATCTCTGACTGTCT
GACACGTGTCCGTAGCTTGGCATCATATGACTGCTTTTTAAGCTAGTACT
AAGGCTGGCAAAGCTCCTTTGCGCCATTCAGACTCGTCCAGACCTTCATC
ATCGATCGTACAATATCTCACGCTCCAATAACATATCCATCTTGCTCCCA
TCCACCCTCCACACGATGCACACACCGCACCCATACACAACGCAGCTACA
AGGCTCATTCAGTATTCAAACAACCATGCGCATTTTTCTTCCCCTCGCCC
TCTTTGCCGCCATGGCCCTGACTTTTACCGCCGCCGTGGAAGACCCCCAG
CAAGACACTTCCGCCGCTCCTGCTGCCCCGGCTACTTCTGACACGCCCGT
GGACCCTGCTGCTGTCCCTGAGGTCCCTGCAACGCCTGCAGCTACGACAT
CCACCGCGTCTGAGGCCCGCCCTCATAAATCAGACGACCCCAAGCTGCGA
GGAACTGAGCCTGAGGATGCCCTGCCTGCCCCGGCTCCGGTCGAGAAGGA
TATAGGTCCCGACGGCACCAAGCTCAAGATGTTGATCAATTGCTTTGCCT
GGTATCTGCCCGATGCTGCCTATCGAGGAGACAATAGCAAGGTCCACGGG
TGCGACGAATCGACCATTCAGTTCTGCAAGACGGATAGCGGGAACAACGA
CCACATGTGCAAATTCGACGGCTCCAATCACTTGCGGGATGCTCGGGGCG
AAAATCCCGCCTGCTACTTCAATTGCCAGATGGAGACCTGTGACAGCTGG
GGAAGTCCCTCCACAGATGCCACCAGAGCCTGTGTCGCCGCTTTAGGCCA
TTAGAAAAAATATGAGACTGGAAGGAGAGCAGGAGGGAGGGAGGGAGGGA
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protein sequence of NO23G01410.1

>NO23G01410.1-protein ID=NO23G01410.1-protein|Name=NO23G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MHTPHPYTTQLQGSFSIQTTMRIFLPLALFAAMALTFTAAVEDPQQDTSA
APAAPATSDTPVDPAAVPEVPATPAATTSTASEARPHKSDDPKLRGTEPE
DALPAPAPVEKDIGPDGTKLKMLINCFAWYLPDAAYRGDNSKVHGCDEST
IQFCKTDSGNNDHMCKFDGSNHLRDARGENPACYFNCQMETCDSWGSPST
DATRACVAALGH*
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mRNA from alignment at chr23:512593..515081+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01410.1 ID=NO23G01410.1|Name=NO23G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2489bp|location=Sequence derived from alignment at chr23:512593..515081+ (Nannochloropsis oceanica)
CCACGGATTACGATCCAAAAAACAGCTCCTATCAAGGTGACGCCCTGGCA
TAGGTGTCCATCCATCGCCCCGCGGACACAAATTAAGAACCCTCTTCCCC
TCCTCCATGCAATGAATACTAAATCCTAGAATGTGCTTTTCAGGGTTTAT
TCATGGGTGCTGGTCCAGCATAAAAATATCACTCCGGAATATACATCTAT
TAAAAAATGCACACGCACGCATGTAGCACCTCAAGACCGCAATACCATGA
ACACGAATTAGATTCTGCTGTATCCTCAATTGATATTTTGCCTCTCAAGC
ACAACGGTGGTAGTATATGGTGGTTTTAATTCCAAGCGTGATTCGATCAA
AGGGATAGGGCTCGCTGTCTGTGTTGAGGGATATGGTCGAAACCCGCGGC
CCAGCCCATCTTTCCAGGGCCTTGCGCTGTGTGTGTATCTCTGACTGTCT
GACACGTGTCCGTAGCTTGGCATCATATGACTGCTTTTTAAGCTAGTACT
AAGGCTGGCAAAGCTCCTTTGCGCCATTCAGACTCGTCCAGACCTTCATC
ATCGATCGTACAATATCTCACGCTCCAATAACATATCCATCTTGCTCCCA
TCCACCCTCCACACGATGCACACACCGCACCCATACACAACGCAGCTACA
AGGCTCATTCAGTATTCAAACAACCATGCGCATTTTTCTTCCCCTCGCCC
TCTTTGCCGCCATGGCCCTGACTTTTACCGCCGCCGTGGAAGACCCCCAG
CAAGACACTTCCGCCGCTCCTGCTGCCCCGGCTACTTCTGACACGCCCGT
GGACCCTGCTGCTGTCCCTGAGGTCCCTGCAACGCCTGCAGGTGAGCTCA
TTCCTACATCAATCATTTCTTTATCCCCTCAACATCGTCCATTCATATAT
ACTCCTGTATTTTATTCAAATCTGCTCGTACATTTGCCTGTGTCTGCTGG
CATCAATTTCCTCCGCTTAAAGCTGTCGATCCATCCCTCCACATCAGCGG
TCCCTGCGACATCTGTGGGTACACCATGAGTGACATGGATGAAATAGATT
GAGAGGGATCAACAAACGGGGGGTTAGTCCGTAGAAAATGCCAACTTGCA
GGGAATTAATGTATCCCTCCCTCCCTTCCTTCCTTCCTCCCTCTCCCCCT
CCCTCCCTTTCTCGTGTCTGTTGTTCCCGAAATCCCAGCTACGACATCCA
CCGCGTCTGAGGCCCGCCCTCATAAATCAGACGACCCCAAGCTGCGAGGA
ACTGAGCCTGAGGGTGAGTTGAAGGGGGGAAGAGAGCGAGGGGGGGGCAG
CGAGGGAAGGAGGGAAGGAATGTGACTGCGTCTGGGGCACTTATATTCTT
AGAGTGGCATCTTCTCCCCCTTTGGCCTATGTGCCGTGTTGTTGCATTGG
CAACTGCCCTTGGTTATGATCCATCCTGTAATACCTTCCTTCCTTGCATA
TAACTCCCTCCCTCCCTAGATGCCCTGCCTGCCCCGGCTCCGGTCGAGAA
GGATATAGGTCCCGACGGCACCAAGCTCAAGATGTTGATCAATTGCTTTG
CCTGGTAATAGATCGAGGGAAGGGAGGAGGGAGGGAGGTTTGGAGGGTAA
GAGAGAGGAGAGAGAATTTTCCCTCGTGCTGAAATGAGAGATGGGTCCTC
TACATGCACCCCTTATACCTACCTGTCCCTCCCTGCCTCCCTCTACCCTC
CCTCCCTCCCCTTTTCCTTTCTTTCCAAGGTATCTGCCCGATGCTGCCTA
TCGAGGAGACAATAGCAAGGTCCACGGGTGCGACGAATCGACCATTCAGG
TGAGTCCTCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCCTTCTCGCTACC
TTCCTACCCTACCCACTCCCATCTTCCGATCCATAAAAAATGTCTCAGTC
GTCCCCTCCCTCCGTCCTCTTCCCCCTCCTTCGATCCCTCCTCCCCTCCC
TCCCTCCCTCCCTCATCAGTTCTGCAAGACGGATAGCGGGAACAACGACC
ACATGTGCAAATTCGACGGCTCCAATCACTTGCGGGTGAGGGCGGGAGAG
CGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGATTGAGTTGTCGTCATTC
GCTCATCCTTCATTCCCTCCCTCCCTCCCCTCCTCACTCCCTCTCCCGCA
GGATGCTCGGGGCGAAAATCCCGCCTGCTACTTCAATTGCCAGGTAAAGC
CATCACCGTCTTCCCTTCCTTCGCTCTTTTCCTCCATCACCGTCTTCCCT
TCCTTCCTTCCTTCGCTCTTTTCCTCCTCATTCCTTTCGTCTTAACCCTT
TCCCCGCTGCTTTTGCCCCTCCCTCCCTTTCTGCCTCCCCCCCTCCTCGT
CGTTCTCCCCCTCCCTAGATGGAGACCTGTGACAGCTGGGGAAGTCCCTC
CACAGATGCCACCAGAGCCTGTGTCGCCGCTTTAGGCCATTAGAAAAAAT
ATGAGACTGGAAGGAGAGCAGGAGGGAGGGAGGGAGGGA
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Coding sequence (CDS) from alignment at chr23:512593..515081+

>NO23G01410.1 ID=NO23G01410.1|Name=NO23G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at chr23:512593..515081+ (Nannochloropsis oceanica)
ATGCACACACCGCACCCATACACAACGCAGCTACAAGGCTCATTCAGTAT
TCAAACAACCATGCGCATTTTTCTTCCCCTCGCCCTCTTTGCCGCCATGG
CCCTGACTTTTACCGCCGCCGTGGAAGACCCCCAGCAAGACACTTCCGCC
GCTCCTGCTGCCCCGGCTACTTCTGACACGCCCGTGGACCCTGCTGCTGT
CCCTGAGGTCCCTGCAACGCCTGCAGCTACGACATCCACCGCGTCTGAGG
CCCGCCCTCATAAATCAGACGACCCCAAGCTGCGAGGAACTGAGCCTGAG
GATGCCCTGCCTGCCCCGGCTCCGGTCGAGAAGGATATAGGTCCCGACGG
CACCAAGCTCAAGATGTTGATCAATTGCTTTGCCTGGTATCTGCCCGATG
CTGCCTATCGAGGAGACAATAGCAAGGTCCACGGGTGCGACGAATCGACC
ATTCAGTTCTGCAAGACGGATAGCGGGAACAACGACCACATGTGCAAATT
CGACGGCTCCAATCACTTGCGGGATGCTCGGGGCGAAAATCCCGCCTGCT
ACTTCAATTGCCAGATGGAGACCTGTGACAGCTGGGGAAGTCCCTCCACA
GATGCCACCAGAGCCTGTGTCGCCGCTTTAGGCCATTAG
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Synonyms
Publications