NO23G00660, NO23G00660 (gene) Nannochloropsis oceanica

Overview
NameNO23G00660
Unique NameNO23G00660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1050
Alignment locationchr23:260584..261633 +

Link to JBrowse

Properties
Property NameValue
DescriptionAutophagy-related protein 17
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:260584..261633 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
Vocabulary: INTERPRO
TermDefinition
IPR007240Autophagy-rel_prot_17
Homology
[Close]
BLAST of NO23G00660 vs. NCBI_GenBank
Match: EWM22969.1 (Autophagy-related protein 17 [Nannochloropsis gaditana])

HSP 1 Score: 196.1 bits (497), Expect = 1.500e-46
Identity = 120/229 (52.40%), Postives = 151/229 (65.94%), Query Frame = 0 
Query:    8 EHLLSLLHDGDRCLAEARLSLQRSHKLLDIFRQEGQRLFHALSLLSAQVDSLTSLLHWVWSSTNAFAARLESLLMLQEGPFHTIASVCQELRQTQVDPELVAGEHGHTLFDFIDDASLSSLRTQAEGDLKEMWVWHERGVRTQTGMEERVLYLQQALSTTREEAGLTEEK--------AXXXXXXXXRGEKRFENTWLCHVMEGNVAEQAAIIERMKASLLEAASAYYR 229
            E LL+LL DGD CL EAR SL RS +LLD+FR E  RL   LSLL AQV +L  LLHWVW++ N+    LE  L   + PF T+ +VC +LRQT+VDPELVAGE GHTLFDF+D+ +++SLR QAE D +E+ V  ERG+R Q  +EER+L L+QA+    E AG+   +         XXXXXXXX      E TWL  V+  NV +QA  +  MKA+L+ AASAY R
Sbjct:    2 EGLLTLLQDGDMCLTEARSSLLRSRELLDVFRHEAGRLLQRLSLLRAQVRALARLLHWVWAANNSLGP-LER-LPPDDAPFQTLEAVCDQLRQTRVDPELVAGERGHTLFDFLDEGAVTSLRAQAEADAREVCVLRERGLRAQASLEERLLCLEQAIRAALEGAGMLPGRDGEXXXXXXXXXXXXXXXXXXXVEATWLWRVLAQNVRDQARAVAEMKAALVRAASAYAR 228
[Close]
BLAST of NO23G00660 vs. NCBI_GenBank
Match: XP_005853619.1 (hypothetical protein NGA_0449801 [Nannochloropsis gaditana CCMP526] >EKU22745.1 hypothetical protein NGA_0449801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 147.5 bits (371), Expect = 6.000e-32
Identity = 76/132 (57.58%), Postives = 95/132 (71.97%), Query Frame = 0 
Query:    8 EHLLSLLHDGDRCLAEARLSLQRSHKLLDIFRQEGQRLFHALSLLSAQVDSLTSLLHWVWSSTNAFAARLESLLMLQEGPFHTIASVCQELRQTQVDPELVAGEHGHTLFDFIDDASLSSLRTQAEGDLKEM 140
            E LL+LL DGD CL EAR SL RS +LLD+ R E  RL   LSLL AQV +L  LLHWVW++ N+    LE  L   + PF T+ +VC +LRQT+VDPELVAGE GHTLFDF+D+ +++SLR QAE D +E+
Sbjct:    2 EDLLTLLQDGDMCLTEARSSLLRSRELLDVIRHEAGRLLQRLSLLRAQVRALARLLHWVWAANNSLGP-LER-LPPDDAPFQTLEAVCDQLRQTRVDPELVAGERGHTLFDFLDEGAVTSLRAQAEADAREV 131
The following BLAST results are available for this feature:
BLAST of NO23G00660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22969.11.500e-4652.40Autophagy-related protein 17 [Nannochloropsis gadi... [more]
XP_005853619.16.000e-3257.58hypothetical protein NGA_0449801 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006314NSK006314Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00660.1NO23G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|195386gene_8415Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100102g4gene7480Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00660.1NO23G00660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00660 ID=NO23G00660|Name=NO23G00660|organism=Nannochloropsis oceanica|type=gene|length=1050bp
ATGGCGAACCACCCGTCGGCAGAGCACCTCTTGTCCTTGCTGCATGACGG
CGACAGGTGCCTAGCCGAGGCCCGTTTGTCCCTCCAGCGGTCTCACAAGC
TCCTGGACATATTTAGACAGGAAGgtgggtgtgtcttctattttatgttc
attaacgaagaaaggaagctggagaaaaggggtgggttggaggggatagg
tctatgttttgcaagggaatggaaagtgagacagaggaccgggggagcca
gcttcaagggccagagcagcgcactggcagaaaatttcatgtctattgta
ccctgatttcccccttctcgccccctgctcccttcgcccttatcctatat
agGCCAGCGTCTCTTTCACGCCCTCTCTCTCCTCTCCGCTCAAGTGGACT
CCCTTACTAGCCTCCTGCACTGGGTCTGGAGCAGCACCAACGCCTTCGCC
GCACGTCTTGAATCTCTCCTCATGCTGCAAGAAGGGCCTTTTCACACCAT
TGCTTCTGTCTGTCAGGAGCTGCGGCAGACCCAGGTCGACCCCGAGTTAG
TCGCCGGGGAGCACGGCCACACGCTTTTTGATTTCATTGATGATGCCTCA
CTATCCTCCTTGAGAACGCAAGCAGAGGGAGACTTGAAAGAAATGTGGGT
TTGGCACGAGAGGGGAGTGAGGACGCAGACCGGGATGGAGGAGCGCGTGT
TGTACCTGCAGCAGGCTCTTAGCACGACTAGGGAAGAGGCGGGGCTTACG
GAAGAGAAAGCCGAGGAAGAGAAGGAGGAAGGGAAAAGGGGAGAAAAGAG
GTTTGAAAACACGTGGTTGTGCCATGTGATGGAAGGCAACGTGGCTGAGC
AAGCAGCCATAATCGAGAGAATGAAAGCTAGCCTCCTCGAGGCAGCAAGC
GCCTACTACCGTCTCTCTCGCACCTCGCACCAGCAGCAGCCACTAAACTC
GCCCTCCCCCCCTCGACTCTCTCCTCCCCTCCTCTCCGCTCTCCGGCCAC
CGACGAGAGAGAACTCCTCCGCCTTCTCCAGTCCGGGATCGACCGAATGA
back to top

protein sequence of NO23G00660.1

>NO23G00660.1-protein ID=NO23G00660.1-protein|Name=NO23G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MANHPSAEHLLSLLHDGDRCLAEARLSLQRSHKLLDIFRQEGQRLFHALS
LLSAQVDSLTSLLHWVWSSTNAFAARLESLLMLQEGPFHTIASVCQELRQ
TQVDPELVAGEHGHTLFDFIDDASLSSLRTQAEGDLKEMWVWHERGVRTQ
TGMEERVLYLQQALSTTREEAGLTEEKAEEEKEEGKRGEKRFENTWLCHV
MEGNVAEQAAIIERMKASLLEAASAYYRLSRTSHQQQPLNSPSPPRLSPP
LLSALRPPTRENSSAFSSPGSTE*
back to top
Synonyms
Publications