NO23G00660.1, NO23G00660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00660.1
Unique NameNO23G00660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length822
Alignment locationchr23:260584..261633 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:260584..261633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00660.1 vs.
Match: EWM22969.1 (Autophagy-related protein 17 [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 2.900e-50
Identity = 119/229 (51.97%), Postives = 153/229 (66.81%), Query Frame = 0 
Query:    8 EHLLSLLHDGDRCLAEARLSLQRSHKLLDIFRQEGQRLFHALSLLSAQVDSLTSLLHWVWSSTNAFAARLESLLMLQEGPFHTIASVCQELRQTQVDPELVAGEHGHTLFDFIDDASLSSLRTQAEGDLKEMWVWHERGVRTQTGMEERVLYLQQALSTTREEAGLTEEKAEEEKEEGKRG--------EKRFENTWLCHVMEGNVAEQAAIIERMKASLLEAASAYYR 229
            E LL+LL DGD CL EAR SL RS +LLD+FR E  RL   LSLL AQV +L  LLHWVW++ N+    LE L    + PF T+ +VC +LRQT+VDPELVAGE GHTLFDF+D+ +++SLR QAE D +E+ V  ERG+R Q  +EER+L L+QA+    E AG+   +  EE+EE + G        E+R E TWL  V+  NV +QA  +  MKA+L+ AASAY R
Sbjct:    2 EGLLTLLQDGDMCLTEARSSLLRSRELLDVFRHEAGRLLQRLSLLRAQVRALARLLHWVWAANNSLGP-LERLPP-DDAPFQTLEAVCDQLRQTRVDPELVAGERGHTLFDFLDEGAVTSLRAQAEADAREVCVLRERGLRAQASLEERLLCLEQAIRAALEGAGMLPGRDGEEEEEEEGGEEVEEEGEEERVEATWLWRVLAQNVRDQARAVAEMKAALVRAASAYAR 228
The following BLAST results are available for this feature:
BLAST of NO23G00660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22969.12.900e-5051.97Autophagy-related protein 17 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00660NO23G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00660.1NO23G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00660.1.cds1NO23G00660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00660.1.cds2NO23G00660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00660.1 ID=NO23G00660.1|Name=NO23G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
ATGGCGAACCACCCGTCGGCAGAGCACCTCTTGTCCTTGCTGCATGACGG
CGACAGGTGCCTAGCCGAGGCCCGTTTGTCCCTCCAGCGGTCTCACAAGC
TCCTGGACATATTTAGACAGGAAGGCCAGCGTCTCTTTCACGCCCTCTCT
CTCCTCTCCGCTCAAGTGGACTCCCTTACTAGCCTCCTGCACTGGGTCTG
GAGCAGCACCAACGCCTTCGCCGCACGTCTTGAATCTCTCCTCATGCTGC
AAGAAGGGCCTTTTCACACCATTGCTTCTGTCTGTCAGGAGCTGCGGCAG
ACCCAGGTCGACCCCGAGTTAGTCGCCGGGGAGCACGGCCACACGCTTTT
TGATTTCATTGATGATGCCTCACTATCCTCCTTGAGAACGCAAGCAGAGG
GAGACTTGAAAGAAATGTGGGTTTGGCACGAGAGGGGAGTGAGGACGCAG
ACCGGGATGGAGGAGCGCGTGTTGTACCTGCAGCAGGCTCTTAGCACGAC
TAGGGAAGAGGCGGGGCTTACGGAAGAGAAAGCCGAGGAAGAGAAGGAGG
AAGGGAAAAGGGGAGAAAAGAGGTTTGAAAACACGTGGTTGTGCCATGTG
ATGGAAGGCAACGTGGCTGAGCAAGCAGCCATAATCGAGAGAATGAAAGC
TAGCCTCCTCGAGGCAGCAAGCGCCTACTACCGTCTCTCTCGCACCTCGC
ACCAGCAGCAGCCACTAAACTCGCCCTCCCCCCCTCGACTCTCTCCTCCC
CTCCTCTCCGCTCTCCGGCCACCGACGAGAGAGAACTCCTCCGCCTTCTC
CAGTCCGGGATCGACCGAATGA
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protein sequence of NO23G00660.1

>NO23G00660.1-protein ID=NO23G00660.1-protein|Name=NO23G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MANHPSAEHLLSLLHDGDRCLAEARLSLQRSHKLLDIFRQEGQRLFHALS
LLSAQVDSLTSLLHWVWSSTNAFAARLESLLMLQEGPFHTIASVCQELRQ
TQVDPELVAGEHGHTLFDFIDDASLSSLRTQAEGDLKEMWVWHERGVRTQ
TGMEERVLYLQQALSTTREEAGLTEEKAEEEKEEGKRGEKRFENTWLCHV
MEGNVAEQAAIIERMKASLLEAASAYYRLSRTSHQQQPLNSPSPPRLSPP
LLSALRPPTRENSSAFSSPGSTE*
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mRNA from alignment at chr23:260584..261633+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00660.1 ID=NO23G00660.1|Name=NO23G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp|location=Sequence derived from alignment at chr23:260584..261633+ (Nannochloropsis oceanica)
ATGGCGAACCACCCGTCGGCAGAGCACCTCTTGTCCTTGCTGCATGACGG
CGACAGGTGCCTAGCCGAGGCCCGTTTGTCCCTCCAGCGGTCTCACAAGC
TCCTGGACATATTTAGACAGGAAGGTGGGTGTGTCTTCTATTTTATGTTC
ATTAACGAAGAAAGGAAGCTGGAGAAAAGGGGTGGGTTGGAGGGGATAGG
TCTATGTTTTGCAAGGGAATGGAAAGTGAGACAGAGGACCGGGGGAGCCA
GCTTCAAGGGCCAGAGCAGCGCACTGGCAGAAAATTTCATGTCTATTGTA
CCCTGATTTCCCCCTTCTCGCCCCCTGCTCCCTTCGCCCTTATCCTATAT
AGGCCAGCGTCTCTTTCACGCCCTCTCTCTCCTCTCCGCTCAAGTGGACT
CCCTTACTAGCCTCCTGCACTGGGTCTGGAGCAGCACCAACGCCTTCGCC
GCACGTCTTGAATCTCTCCTCATGCTGCAAGAAGGGCCTTTTCACACCAT
TGCTTCTGTCTGTCAGGAGCTGCGGCAGACCCAGGTCGACCCCGAGTTAG
TCGCCGGGGAGCACGGCCACACGCTTTTTGATTTCATTGATGATGCCTCA
CTATCCTCCTTGAGAACGCAAGCAGAGGGAGACTTGAAAGAAATGTGGGT
TTGGCACGAGAGGGGAGTGAGGACGCAGACCGGGATGGAGGAGCGCGTGT
TGTACCTGCAGCAGGCTCTTAGCACGACTAGGGAAGAGGCGGGGCTTACG
GAAGAGAAAGCCGAGGAAGAGAAGGAGGAAGGGAAAAGGGGAGAAAAGAG
GTTTGAAAACACGTGGTTGTGCCATGTGATGGAAGGCAACGTGGCTGAGC
AAGCAGCCATAATCGAGAGAATGAAAGCTAGCCTCCTCGAGGCAGCAAGC
GCCTACTACCGTCTCTCTCGCACCTCGCACCAGCAGCAGCCACTAAACTC
GCCCTCCCCCCCTCGACTCTCTCCTCCCCTCCTCTCCGCTCTCCGGCCAC
CGACGAGAGAGAACTCCTCCGCCTTCTCCAGTCCGGGATCGACCGAATGA
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Coding sequence (CDS) from alignment at chr23:260584..261633+

>NO23G00660.1 ID=NO23G00660.1|Name=NO23G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr23:260584..261633+ (Nannochloropsis oceanica)
ATGGCGAACCACCCGTCGGCAGAGCACCTCTTGTCCTTGCTGCATGACGG
CGACAGGTGCCTAGCCGAGGCCCGTTTGTCCCTCCAGCGGTCTCACAAGC
TCCTGGACATATTTAGACAGGAAGGCCAGCGTCTCTTTCACGCCCTCTCT
CTCCTCTCCGCTCAAGTGGACTCCCTTACTAGCCTCCTGCACTGGGTCTG
GAGCAGCACCAACGCCTTCGCCGCACGTCTTGAATCTCTCCTCATGCTGC
AAGAAGGGCCTTTTCACACCATTGCTTCTGTCTGTCAGGAGCTGCGGCAG
ACCCAGGTCGACCCCGAGTTAGTCGCCGGGGAGCACGGCCACACGCTTTT
TGATTTCATTGATGATGCCTCACTATCCTCCTTGAGAACGCAAGCAGAGG
GAGACTTGAAAGAAATGTGGGTTTGGCACGAGAGGGGAGTGAGGACGCAG
ACCGGGATGGAGGAGCGCGTGTTGTACCTGCAGCAGGCTCTTAGCACGAC
TAGGGAAGAGGCGGGGCTTACGGAAGAGAAAGCCGAGGAAGAGAAGGAGG
AAGGGAAAAGGGGAGAAAAGAGGTTTGAAAACACGTGGTTGTGCCATGTG
ATGGAAGGCAACGTGGCTGAGCAAGCAGCCATAATCGAGAGAATGAAAGC
TAGCCTCCTCGAGGCAGCAAGCGCCTACTACCGTCTCTCTCGCACCTCGC
ACCAGCAGCAGCCACTAAACTCGCCCTCCCCCCCTCGACTCTCTCCTCCC
CTCCTCTCCGCTCTCCGGCCACCGACGAGAGAGAACTCCTCCGCCTTCTC
CAGTCCGGGATCGACCGAATGA
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Synonyms
Publications