NO23G00100, NO23G00100 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO23G00100 vs. NCBI_GenBank
Match: GAQ84675.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein [Klebsormidium nitens]) HSP 1 Score: 126.7 bits (317), Expect = 1.900e-25 Identity = 65/125 (52.00%), Postives = 86/125 (68.80%), Query Frame = 0 Query: 349 GERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRLL 474 G+ KMVLVVR+DL M GKIAAQC HAA+G Y DL Q+Q LLS W++ G+P I++ D+ + L+ AS GLPTH++ DAGRT+V AGS TVLA+GP P +++DA TG L+L+ Sbjct: 104 GQEMKMVLVVRQDLKMGGGKIAAQCSHAAVGTYHDL-------QRQNRALLSKWEACGQPKIVVLCKDMREMGQLEGKASRAGLPTHVITDAGRTQVAAGSKTVLAVGPGPKSVVDAVTGHLKLM 221
BLAST of NO23G00100 vs. NCBI_GenBank
Match: XP_018547141.1 (PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial isoform X1 [Lates calcarifer]) HSP 1 Score: 115.9 bits (289), Expect = 3.300e-22 Identity = 63/124 (50.81%), Postives = 82/124 (66.13%), Query Frame = 0 Query: 349 GERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRL 473 G FKMVLVVR DL M GK+AAQC HAA+ AY+ VQ++ LL W+ G+P ++++APD +L L + A E GLP L++DAGRT++ GS TVL IGP PA LID+ TG L+L Sbjct: 72 GGEFKMVLVVRNDLKMGKGKVAAQCSHAAVSAYK-------QVQRRNPELLKQWEYCGQPKVVVKAPDEDTLIDLLSHAKEVGLPVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDSVTGDLKL 188
BLAST of NO23G00100 vs. NCBI_GenBank
Match: XP_018547142.1 (PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial isoform X2 [Lates calcarifer] >XP_018547143.1 PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial isoform X2 [Lates calcarifer]) HSP 1 Score: 115.9 bits (289), Expect = 3.300e-22 Identity = 63/124 (50.81%), Postives = 82/124 (66.13%), Query Frame = 0 Query: 349 GERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRL 473 G FKMVLVVR DL M GK+AAQC HAA+ AY+ VQ++ LL W+ G+P ++++APD +L L + A E GLP L++DAGRT++ GS TVL IGP PA LID+ TG L+L Sbjct: 54 GGEFKMVLVVRNDLKMGKGKVAAQCSHAAVSAYK-------QVQRRNPELLKQWEYCGQPKVVVKAPDEDTLIDLLSHAKEVGLPVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDSVTGDLKL 170
BLAST of NO23G00100 vs. NCBI_GenBank
Match: PHH67664.1 (hypothetical protein CDD80_662 [Ophiocordyceps camponoti-rufipedis]) HSP 1 Score: 115.9 bits (289), Expect = 3.300e-22 Identity = 62/127 (48.82%), Postives = 85/127 (66.93%), Query Frame = 0 Query: 347 QAGERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRLL 474 + GE K+VLVVR DLGM+ GKIAAQC HA L Y+ L+ Q+ LLS W+ G+ I L+A + ++ L+A A +GLP +V+DAGRT++ AGS+TVL +GPAP +L+D TG L+LL Sbjct: 88 KGGEECKLVLVVRTDLGMTKGKIAAQCSHATLACYKALARLPPSSPQR--TLLSRWERSGQAKIALQAKSEAEVRELRAQALARGLPAEMVQDAGRTQIEAGSLTVLGVGPAPRSLVDEVTGHLKLL 212
BLAST of NO23G00100 vs. NCBI_GenBank
Match: XP_022060034.1 (peptidyl-tRNA hydrolase 2, mitochondrial [Acanthochromis polyacanthus] >XP_022043434.1 peptidyl-tRNA hydrolase 2, mitochondrial-like [Acanthochromis polyacanthus]) HSP 1 Score: 115.5 bits (288), Expect = 4.400e-22 Identity = 62/124 (50.00%), Postives = 81/124 (65.32%), Query Frame = 0 Query: 349 GERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRL 473 G FKM+LVVR DL M GK+AAQC HAA+ AY+ VQ++ LL W+ G+P ++++APD +L L A E GLP L++DAGRT++ GS TVL IGP PA LID+ TG L+L Sbjct: 54 GGEFKMILVVRNDLKMGKGKVAAQCSHAAVSAYK-------QVQRRNPELLKQWEYCGQPKVVVKAPDEDTLIDLLGRAKEVGLPVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDSVTGDLKL 170
BLAST of NO23G00100 vs. NCBI_GenBank
Match: XP_023123214.1 (peptidyl-tRNA hydrolase 2, mitochondrial [Amphiprion ocellaris]) HSP 1 Score: 115.5 bits (288), Expect = 4.400e-22 Identity = 62/124 (50.00%), Postives = 81/124 (65.32%), Query Frame = 0 Query: 349 GERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRL 473 G FKM+LVVR DL M GK+AAQC HAA+ AY+ VQ++ LL W+ G+P ++++APD +L L A E GLP L++DAGRT++ GS TVL IGP PA LID+ TG L+L Sbjct: 54 GGEFKMILVVRNDLKMGKGKVAAQCSHAAVSAYK-------QVQRRNPELLKQWEYCGQPKVVVKAPDEDTLIDLLGRAKEVGLPVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDSVTGDLKL 170
BLAST of NO23G00100 vs. NCBI_GenBank
Match: XP_008283064.1 (PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Stegastes partitus]) HSP 1 Score: 115.2 bits (287), Expect = 5.700e-22 Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = 0 Query: 349 GERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRL 473 G FKM+LVVR DL M GK+AAQC HAA+ AY+ VQ++ LL W+ G+P ++++APD +L L A E GLP L++DAGRT++ GS TVL +GP PA LID+ TG L+L Sbjct: 54 GGEFKMILVVRNDLKMGKGKVAAQCSHAAVSAYK-------QVQRRNPELLKQWEYCGQPKVVVKAPDEDALIDLLGRAKEVGLPVSLIQDAGRTQIAPGSRTVLGVGPGPADLIDSVTGDLKL 170
BLAST of NO23G00100 vs. NCBI_GenBank
Match: XP_023274090.1 (peptidyl-tRNA hydrolase 2, mitochondrial [Seriola lalandi dorsalis] >XP_023274091.1 peptidyl-tRNA hydrolase 2, mitochondrial [Seriola lalandi dorsalis] >XP_023274093.1 peptidyl-tRNA hydrolase 2, mitochondrial [Seriola lalandi dorsalis]) HSP 1 Score: 114.8 bits (286), Expect = 7.500e-22 Identity = 61/124 (49.19%), Postives = 82/124 (66.13%), Query Frame = 0 Query: 349 GERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRL 473 G FKM+LVVR DL M GK+AAQC HAA+ AY+ VQ++ LL W+ G+P ++++APD ++L L A E GLP L++DAGRT++ GS TVL IGP PA LID+ +G L+L Sbjct: 54 GGEFKMILVVRNDLKMGKGKVAAQCAHAAVSAYK-------QVQRRNPELLKQWEYCGQPKVVVKAPDENTLIDLLGHAKEVGLPVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDSVSGELKL 170
BLAST of NO23G00100 vs. NCBI_GenBank
Match: XP_023688809.1 (peptidyl-tRNA hydrolase 2, mitochondrial [Paramormyrops kingsleyae] >XP_023688810.1 peptidyl-tRNA hydrolase 2, mitochondrial [Paramormyrops kingsleyae]) HSP 1 Score: 114.8 bits (286), Expect = 7.500e-22 Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 0 Query: 347 QAGERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRL 473 ++GE FKM+LVVR DL M GK+AAQC HAA+ AY+ + + D LL W+ G+P ++++APD +L L A E GLP L++DAGRT++ GS TVL +GP PA L+D TG L+L Sbjct: 51 ESGE-FKMILVVRSDLKMGKGKVAAQCSHAAVSAYKQVQRRNPD-------LLKQWEYSGQPKVVVKAPDEDTLHELLIRAKEFGLPVSLIQDAGRTQIAPGSRTVLGVGPGPADLVDMVTGHLKL 168
BLAST of NO23G00100 vs. NCBI_GenBank
Match: NP_001297812.1 (peptidyl-tRNA hydrolase 2, mitochondrial [Esox lucius] >ACO13326.1 Peptidyl-tRNA hydrolase 2, mitochondrial precursor [Esox lucius]) HSP 1 Score: 114.4 bits (285), Expect = 9.700e-22 Identity = 60/124 (48.39%), Postives = 79/124 (63.71%), Query Frame = 0 Query: 349 GERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRL 473 G FKM+LVVR DL M GK+AAQC HAA+ AY+ + + D +L W+ G+P ++++APD SL L A E GLP L++DAGRT++ GS TVL IGP PA L+D TG L+L Sbjct: 56 GGEFKMILVVRSDLKMGKGKVAAQCSHAAVSAYKQVQRRNPD-------MLKQWEYCGQPKVVVKAPDEDSLLELLTLAKEVGLPISLIQDAGRTQIAPGSRTVLGIGPGPADLVDQVTGHLKL 172 The following BLAST results are available for this feature:
BLAST of NO23G00100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO23G00100 ID=NO23G00100|Name=NO23G00100|organism=Nannochloropsis oceanica|type=gene|length=4334bpback to top protein sequence of NO23G00100.1 >NO23G00100.1-protein ID=NO23G00100.1-protein|Name=NO23G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bpback to top protein sequence of NO23G00100.2 >NO23G00100.2-protein ID=NO23G00100.2-protein|Name=NO23G00100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=474bpback to top protein sequence of NO23G00100.3 >NO23G00100.3-protein ID=NO23G00100.3-protein|Name=NO23G00100.3|organism=Nannochloropsis oceanica|type=polypeptide|length=474bpback to top protein sequence of NO23G00100.4 >NO23G00100.4-protein ID=NO23G00100.4-protein|Name=NO23G00100.4|organism=Nannochloropsis oceanica|type=polypeptide|length=526bpback to top Synonyms
Publications
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