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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr23 | genome | chr23:35303..40344 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G00100.4 vs.
Match: GAQ84675.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein [Klebsormidium nitens]) HSP 1 Score: 122.1 bits (305), Expect = 5.200e-24 Identity = 67/140 (47.86%), Postives = 93/140 (66.43%), Query Frame = 0
Query: 386 SSSSSSSSSSSSLQAGERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRLL 526
S S+++ ++ G+ KMVLVVR+DL M GKIAAQC HAA+G Y DL Q+Q LLS W++ G+P I++ D+ + L+ AS GLPTH++ DAGRT+V AGS TVLA+GP P +++DA TG L+L+
Sbjct: 89 SGPSNAALPATFASDGQEMKMVLVVRQDLKMGGGKIAAQCSHAAVGTYHDL-------QRQNRALLSKWEACGQPKIVVLCKDMREMGQLEGKASRAGLPTHVITDAGRTQVAAGSKTVLAVGPGPKSVVDAVTGHLKLM 221
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G00100.4 ID=NO23G00100.4|Name=NO23G00100.4|organism=Nannochloropsis oceanica|type=mRNA|length=1961bp
ACAGCAGCATAGGTATCTGAAGCGTACGCATTAACAATTGAAGGAGTGTT
GGCCACTGCTGCCAGAGAGCCGGGCATGAAAAGAAACAGAGCCAAAGTCA
TTGTCACAGGCTTTGGCCCCTTTCGGGGGGTATCAGACAACCCTACCCAA
CACTTGATTGAGGCGTTGCGGGAAGGCCAAGTGGCAGAAGGGGAAGGGGA
GGTCACCCCTCTCCTCTGCCACGTTCTAGAAGTTTCCGCGGAGGGCGCCA
AGGAGGCTCTGAAGACGCTGCATTGTCACACCGCGGGCTCTGTTGGGGGA
GGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGGAGGATGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGGGCTGCTCATCTACCTGCACATGGGCGTGGATGCTGAGGCGAAA
GAGCTCAAGCTGGAATGCCGTGCCTTCAACGAGGCCGACTTTCGCTGCCC
CGATGAACGGCAGCACCAGCCTCGATCCCAGCCCATTCAGCCGTCTCTAC
TCGACACATCCCACGCTTACTACAGCACTCTGAACCTCACGGCCTTGGCG
GAGGTGCTGACGGAGGAAGGGAAGGAAGGAGGCCATGCCACTGAACGCTG
GGGAAACGTGTCTCTCTCCCATGATGCGGGTCGGTTTGTCTGCAACTACA
CTTACTATCAATCGCTCCACTGCTGTCAGGGAAAGGAGAATAGGGCCTCC
CTCTTTCTCCACGTGCCTCCCTTCGCCGTCATTCCATTCAATGCTCAGCT
CGCCTTCCTGAAGCGCCTCCTCACCCTCCTCTCTCACACTCTCCCTAATC
CCACTCACGCTGACACCCACCGTGCCCTGGCCCCCCCCATCAATATTCCT
TCCTCTTTCCCTCCCGCGGTGCCTGACGGTGGTGAGAAGGAGGAGGAGGA
ACAGCAGCAGCAGCAGCGGGAGGAGGGCGATGGAGCACACGGAGAAGCAA
GAGCAAGTCGAGGAGGAGAAGGAGAAGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGAAGAGGCAGTGATTTCAGTCATGGTCGAGATGGGATT
CGACAGAGGGCAGGTCTCGACCGCTCTTCCCTACGTGTCTCGCACCACGC
CCCTCCCTCCCTCCAGCCCCGCCTTCCAAGAAGCCCTCCTCCTCTGCCTC
CTCTCCGGCGGTGCCCCCCCCTCATCCTCCTCGTCGTCGTCGTCGTCGTC
CTCCTCCTCCTCGTCTCTCCAGGCGGGGGAGCGGTTCAAGATGGTGCTGG
TCGTGAGGGAGGACCTAGGCATGAGCACTGGCAAAATAGCCGCGCAGTGC
GTGCACGCTGCCCTTGGCGCCTACCAGGATCTCTCCACCACCTCCACCGA
CGTCCAGCAGCAAGGCCTCCTCCTCCTCTCCGCCTGGCAGTCCCAGGGCG
AGCCCGTCATAATCCTCAGAGCCCCCGACCTCTCCTCTCTCCAGATCCTG
CAGGCGGCTGCTTCCGAACAAGGCCTCCCTACCCACCTTGTGCGCGATGC
GGGCCGCACAGAAGTCACTGCCGGGTCCATCACCGTCCTTGCCATAGGCC
CCGCTCCCGCCGCTCTAATAGATGCCCATACCGGCTCACTTCGCTTGTTG
TGAGGGAGGGAGGAAGGAAGACAGGGAGGGAGGGATTAAGGGATGGAGGC
AAGCAAACCAAGGCGGCGGCGTTCTAGGGACGAGGAAAAAGAGCGTCTAG
GAATGAACGTACTAGAGCGTAGGGAAGGAGTGGGGCAACAGACAGGGAAA
GTAGTGTAGTAGTTTAGAAACATGTGAAATAAATTGGCAGAATAATATGG
ATACAAGCGACAGAAGTGCTGTGCTGTTTTGTTTGCTGTACTGCTGTGCT
GCCGTGCGTGAGATCGTCGTCGACGCCTTCCCAGGCTCGTAAATCTTGTA
TTTAATCGTAG back to topprotein sequence of NO23G00100.4 >NO23G00100.4-protein ID=NO23G00100.4-protein|Name=NO23G00100.4|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MKRNRAKVIVTGFGPFRGVSDNPTQHLIEALREGQVAEGEGEVTPLLCHV
LEVSAEGAKEALKTLHCHTAGSVGGGKKKKKKKKKKEKEEDEEEEEEEEE
EEEEEEEEEEGLLIYLHMGVDAEAKELKLECRAFNEADFRCPDERQHQPR
SQPIQPSLLDTSHAYYSTLNLTALAEVLTEEGKEGGHATERWGNVSLSHD
AGRFVCNYTYYQSLHCCQGKENRASLFLHVPPFAVIPFNAQLAFLKRLLT
LLSHTLPNPTHADTHRALAPPINIPSSFPPAVPDGGEKEEEEQQQQQREE
GDGAHGEARASRGGEGEGGREGGREGGREEEAVISVMVEMGFDRGQVSTA
LPYVSRTTPLPPSSPAFQEALLLCLLSGGAPPSSSSSSSSSSSSSSSLQA
GERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLL
LSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAG
SITVLAIGPAPAALIDAHTGSLRLL* back to topmRNA from alignment at chr23:35303..40344+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G00100.4 ID=NO23G00100.4|Name=NO23G00100.4|organism=Nannochloropsis oceanica|type=mRNA|length=5042bp|location=Sequence derived from alignment at chr23:35303..40344+ (Nannochloropsis oceanica)
ACAGCAGCATAGGTATCTGAAGCGTACGCATTAACAATTGAAGGAGTGTT
GGCCACTGCTGCCAGAGAGCCGGGCATGAAAAGGTGAGCATGGCTATTTC
TGCCCAGATCCATCATCATCATCATCATCTCCCCTGTCCCTTCCCTCCCT
CCCTCGAACCGCACCCTTTAGAAACAGAGCCAAAGTCATTGTCACAGGCT
TTGGCCCCTTTCGGGGGGTATCAGACAACCCTACCCAACACTTGATTGAG
GCGTTGCGGGAAGGCCAAGTGGCAGAAGGGGAAGGGGAGGTCAGTACGGA
GGGAGGAGGGGTGGGTGGGAGAGGCCGTAGCTTAAATCGTCGAGGCACTT
TGAGTGACGAATTTTGTCGTCGTAGGCAACTCCTTTATTGATCGAGAATG
GCAGTTCAAGCATGCAGAAGACACAAGACTGCCGCATTTACCTGCAGGAC
GCACCGCAACTAAGCTCAACAGACGCTCCAATGGGCCGATTTGTCCCAAT
CAAACTATCATTGTAGAGGCCAGAGCAGGAGTAGTAAATGTTATTGGTGT
GACTGGGATAGTAATTGTTACATATGTTCCTGCGGAGGCTACCTCGGGGG
AGGGAGGGTGGAGCGTTAGGGAGTCATGTATGTGCGCCGCCCTGCAAATG
TGCTTGAGTGTGTGCCTGTGTGGGTGTGTGAAACGGTGCTTGGAATCGTA
TCTGGAATGGTGTGTGCACTGGGGCTTGAGTAACACACCCGATTCCTCTT
AAACCGACAAGAAGAGACGGAGAGGGTGTTTAGGATCGTACATAGCGGTG
ATATTCATCTCTTCCATTGGCCCCTTGCCTCTTCTCTCCATTCCCCCACG
CCCTCCCTCCCTCCTTCCTCCCCCCCCTCGCCTCAGGTCACCCCTCTCCT
CTGCCACGTTCTAGAAGTTTCCGCGGAGGGCGCCAAGGAGGCTCTGAAGA
CGCTGCATTGTCACACCGCGGGTAGGGACGTGACGAGGGAGGGAGAGAGG
GAGGGAGGTAGGGAAGGAAAAGCAAGCAGGGGAGGGAAACAAGGAGGGAA
GGAGAAAGAGGAGGTAGGGAAAGAGGAGGGGAAGGAATGAGTGATTTTTG
CCCGGTGACCTTGACCCACCTTCCCAACGTACGCATGACAGGCTCTGTTG
GGGGAGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGGAG
GATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGCTGCTCATCTACCTGCACATGGGCGTGGATGCTGAGG
CGAAAGAGCTCAAGCTGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAAGGAAGGAGGGCTCCAGAAGGCAGTCACATGAATATAAGGGTG
CCCCACACGCCCAAATTCCATCTCTTATTATTATTATATATATATATATA
CTTCTTCTTGTATTCCTCGCATTACTCTTTCTACTTATTTCAACGACTAT
TATTATTACTTCTTTTTATATCGTTTATCCCCCCCCCCCTTTTCTGCCCG
TATATCTCCCGCCACAGGAATGCCGTGCCTTCAACGAGGCCGACTTTCGC
TGCCCCGATGAACGGCAGGTATGGATGTAACGCCTCCGGTGGCTTGGACG
GGAGGAGGGAAGGAGGGAGGGAGAGAGGGAGGGAGGGGGGAGAGAAAGGA
CATTGGACATTGACGACTCGAGCCACGATTTATATGGATGCCCCCCCCTC
CCCTTTTCTCCCTCCTTTTCCTCCCTCCTTCCTGTTGCACGACCCACCGG
CTGAATCGATCCGTTCTTTCCTAGCTCACATTGCTGCTCCCTCCCTCTTT
GCCTCCCTCCCTCCCTCCCTCCCCCCCTCCTCCCCAGCACCAGCCTCGAT
CCCAGCCCATTCAGCCGTCTCTACTCGACACATCCCACGCTTACTACAGC
ACTCTGAACCTCACGGCCTTGGCGGAGGTGAAAAGGGAGAGAGGGAGGGA
GGGGAAAGGCTTTTTGGTAGATGCATTCATTTTTTGTCCTTCTTTTACAA
ACCGACGATCGACATCATTCAACTATAACCATACGATAACCTCAAGGTGC
TGACGGAGGAAGGGAAGGAAGGAGGCCATGCCACTGAACGCTGGGGAAAC
GTGTCTCTCTCCCATGATGCGGGTATGTACTCCCCCTTCTTCCCTCCCTC
CCTCCGTCCCTCCCTCCCTCCCTCCCTCCCTCTCCTCCCGTCAGTCTACA
AGCAGCCCTGGCGTTTCATTTTATTGCCGAACCCCTCGGCAATTAACCTC
CCTCCTTCCGTCCCTCTTTTTCTCCCTCCTTCCCTCCCTGTTCTAAGCAA
CAGGCTCCTGTCCTTTCCCACTGATCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCTATCCCTCCTTCCCTTCCTCCCTCCCTCCTTTCCTCTCT
CCCTCCCTCCCTCCCATCCTCCTTAAAGGTCGGTTTGTCTGCAACTACAC
TTACTATCAATCGCTCCACTGCTGTCAGGGAAAGGAGAATAGGGTGCGGC
GGGAGGGAGGGCGGGAGGGAGGGCTGGAGGGAGGGCGGGCGGGAGAGTAG
GAGTGGGTGTAATATCCATTTTCACCTGTTTTTCCCTCCCCCTCCTCCGT
TCCTCCCTCCCTCCCTTCCTATTTCAAGGCCTCCCTCTTTCTCCACGTGC
CTCCCTTCGCCGTCATTCCATTCAATGCTCAGCTCGCCTTCCTGAAGCGC
CTCCTCACCCTCCTCTCTCACACTCTCCCTAATCCCACTCACGCTGACAC
CCACCGGTACGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCTTTTCTCCCTCCCTCCCTCCCTTCCTCCTGTCTGTCCCTTTACATT
TCTCCCGCCACCCCACCCCTCCCTCCCTCCCTCGCCCCCTCCCTCCCTCC
GTCAGTGCCCTGGCCCCCCCCATCAATATTCCTTCCTCTTTCCCTCCCGC
GGTGCCTGACGGTGGTGAGAAGGAGGAGGAGGAACAGCAGCAGCAGCAGC
GGGAGGAGGGCGATGGAGCACACGGAGAAGCAAGAGCAAGTCGAGGAGGA
GAAGGAGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGA
GGCAGTGATTTCAGTCATGGTCGAGATGGGATTCGACAGGTGCGGATCGG
GTAGGGAAGGAGGGAGGGAGGAGTGTTCGCATGCGGAGTAGGTGCTTCAC
GTATCATATTTTTCTCCCTCTTTCCCTCCCTCCGTCCCTCCCTCCTCAGA
GGGCAGGTCTCGACCGCTCTTCCCTACGTGTCTCGCACCACGCCCCTCCC
TCCCTCCAGCCCCGCCTTCCAAGAAGCCCTCCTCCTCTGCCTCCTCTCCG
GCGGTGCCCCCCCCTCATCCTCCTCGTCGTCGTCGTCGTCGTCCTCCTCC
TCCTCGTCTCTCCAGGCGGGGGAGCGGTTCAAGATGGTGCTGGTCGTGAG
GGAGGACCTAGGCATGAGCACTGGCAAAATAGCCGCGCAGTGCGTGCACG
GTACGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCCCCCTC
CTTCCTGCTCTTGTTTGCTTGGGACGAGGACGACACGATCAAAAGCTCGT
GTATGCTCGTCGGCGTCCAGTACCCGGATGGAAGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGCGAATGGTTTTGATCCAGCTGCCTTCTCTCTCTCACA
CACTCACACACTCGTGCATACACATGCATGCACACACACACACACTCACA
GCTGCCCTCTCTCACACACATACACATGCACTTAAACATGATCTCACGCA
TACACATGCAAGCACACACACACACACTCACAGCTGCCCTCTCTCACACA
CATACACATGCACTTAAACATGATCTCACGCATACACATGCATGCACACA
CACACACACTCACAGCTGCCCTCTCTCACACACATACACATGCACTTAAA
CATGATCTCACGCATGCACATGCATGCACACACACACACTCACAGCTGCC
CTTGGCGCCTACCAGGATCTCTCCACCACCTCCACCGACGTCCAGCAGCA
AGGTGTGCCTGCCCCTCCCTCTCTCCCTGCCTCCTACTGTTCCTCCCTCC
CTCATTCCCTCTCATATATTGTATATATTATTATTTCATATTCTCCATCG
CTTCTTCTCTCCCTCAAGTCTTCCCTCGTTAGGCGCCCTTGCTTCGTTTA
ATTTTGTATCACGACCAGCCCCATGTCCTCCTCACCCTCTGCTTCCGCTC
CTCCTCCTTCCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCACTCTCCCTCCCTCCCTCCCTCCAGGCCTCCTCCTC
CTCTCCGCCTGGCAGTCCCAGGGCGAGCCCGTCATAATCCTCAGAGCCCC
CGACCTCTCCTCTCTCCAGATCCTGCAGGCGGCTGCTTCCGAACAAGGTA
CGCCCCTCCCCTCCTCCCTCCCCCCCTTCCTCCTCCCTCCTCCCATCGTC
CCCTTAATCCGACCTCTCTCCCTCCCTCCCTAACTCCCACCCCCTCCTTC
CAGGCCTCCCTACCCACCTTGTGCGCGATGCGGGCCGCACAGAAGTCACT
GCCGGGTCCATCACCGTCCTTGCCATAGGCCCCGCTCCCGCCGCTCTAAT
AGATGCCCATACCGGCTCACTTCGCTTGTTGTGAGGGAGGGAGGAAGGAA
GACAGGGAGGGAGGGATTAAGGGATGGAGGCAAGCAAACCAAGGCGGCGG
CGTTCTAGGGACGAGGAAAAAGAGCGTCTAGGAATGAACGTACTAGAGCG
TAGGGAAGGAGTGGGGCAACAGACAGGGAAAGTAGTGTAGTAGTTTAGAA
ACATGTGAAATAAATTGGCAGAATAATATGGATACAAGCGACAGAAGTGC
TGTGCTGTTTTGTTTGCTGTACTGCTGTGCTGCCGTGCGTGAGATCGTCG
TCGACGCCTTCCCAGGCTCGTAAATCTTGTATTTAATCGTAG back to topCoding sequence (CDS) from alignment at chr23:35303..40344+ >NO23G00100.4 ID=NO23G00100.4|Name=NO23G00100.4|organism=Nannochloropsis oceanica|type=CDS|length=1578bp|location=Sequence derived from alignment at chr23:35303..40344+ (Nannochloropsis oceanica)
ATGAAAAGAAACAGAGCCAAAGTCATTGTCACAGGCTTTGGCCCCTTTCG
GGGGGTATCAGACAACCCTACCCAACACTTGATTGAGGCGTTGCGGGAAG
GCCAAGTGGCAGAAGGGGAAGGGGAGGTCACCCCTCTCCTCTGCCACGTT
CTAGAAGTTTCCGCGGAGGGCGCCAAGGAGGCTCTGAAGACGCTGCATTG
TCACACCGCGGGCTCTGTTGGGGGAGGGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGGAGAAGGAGGAGGATGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCTGCTCATCTACCTGCA
CATGGGCGTGGATGCTGAGGCGAAAGAGCTCAAGCTGGAATGCCGTGCCT
TCAACGAGGCCGACTTTCGCTGCCCCGATGAACGGCAGCACCAGCCTCGA
TCCCAGCCCATTCAGCCGTCTCTACTCGACACATCCCACGCTTACTACAG
CACTCTGAACCTCACGGCCTTGGCGGAGGTGCTGACGGAGGAAGGGAAGG
AAGGAGGCCATGCCACTGAACGCTGGGGAAACGTGTCTCTCTCCCATGAT
GCGGGTCGGTTTGTCTGCAACTACACTTACTATCAATCGCTCCACTGCTG
TCAGGGAAAGGAGAATAGGGCCTCCCTCTTTCTCCACGTGCCTCCCTTCG
CCGTCATTCCATTCAATGCTCAGCTCGCCTTCCTGAAGCGCCTCCTCACC
CTCCTCTCTCACACTCTCCCTAATCCCACTCACGCTGACACCCACCGTGC
CCTGGCCCCCCCCATCAATATTCCTTCCTCTTTCCCTCCCGCGGTGCCTG
ACGGTGGTGAGAAGGAGGAGGAGGAACAGCAGCAGCAGCAGCGGGAGGAG
GGCGATGGAGCACACGGAGAAGCAAGAGCAAGTCGAGGAGGAGAAGGAGA
AGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGAGGCAGTGA
TTTCAGTCATGGTCGAGATGGGATTCGACAGAGGGCAGGTCTCGACCGCT
CTTCCCTACGTGTCTCGCACCACGCCCCTCCCTCCCTCCAGCCCCGCCTT
CCAAGAAGCCCTCCTCCTCTGCCTCCTCTCCGGCGGTGCCCCCCCCTCAT
CCTCCTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGTCTCTCCAGGCG
GGGGAGCGGTTCAAGATGGTGCTGGTCGTGAGGGAGGACCTAGGCATGAG
CACTGGCAAAATAGCCGCGCAGTGCGTGCACGCTGCCCTTGGCGCCTACC
AGGATCTCTCCACCACCTCCACCGACGTCCAGCAGCAAGGCCTCCTCCTC
CTCTCCGCCTGGCAGTCCCAGGGCGAGCCCGTCATAATCCTCAGAGCCCC
CGACCTCTCCTCTCTCCAGATCCTGCAGGCGGCTGCTTCCGAACAAGGCC
TCCCTACCCACCTTGTGCGCGATGCGGGCCGCACAGAAGTCACTGCCGGG
TCCATCACCGTCCTTGCCATAGGCCCCGCTCCCGCCGCTCTAATAGATGC
CCATACCGGCTCACTTCGCTTGTTGTGA back to top
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