NO22G01420, NO22G01420 (gene) Nannochloropsis oceanica

Overview
NameNO22G01420
Unique NameNO22G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2116
Alignment locationchr22:419190..421305 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:419190..421305 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO22G01420 vs. NCBI_GenBank
Match: EWM21487.1 (hypothetical protein Naga_100019g62 [Nannochloropsis gaditana])

HSP 1 Score: 492.7 bits (1267), Expect = 1.200e-135
Identity = 261/373 (69.97%), Postives = 313/373 (83.91%), Query Frame = 0
Query:    4 SSSSAQGQALSPPSDEEATNGPGASLHGVSAHGLVSLERAEHILQRVIDTVNDQGLQISSLYLLLQTLVGTETNPLPRSLLNVEGNFSRLNHRLDRVEKAIHVPGVAPSVPIGEVVSTNGVELNHALDVLHKKANQADVEARQHKLEEEVAEVYAWAGARELVERLEESNRATRTQVQAMEAALGCKVDKVEMAGMEATLNRIKIYNSRMEGLEQGQAQDMARVRAEVQLLQERRIAADQQLEVTRKALGALEEKHGAWKRETLELMKEVDGELAQMASLSQLEGKLDARVWEREWRLACERLDSKVDLPEMAAMAERVGGVEEDVVRLGRESDQYSRFVAWFYSRGEAYEHNLNALDRTIGRLAKESLGKYL 377
            S+SSA   +  P SD    N P ASL GVSA GLVSLERAE ILQR+IDTVN+QGLQISS++LLLQTLVGT+T PLPRSLL+VEG FSRL+HRL+R+E+AI VPG+AP V IGEVV+ NGVELNHA + L  KA++ADVE RQHKLEEEVA VYAWAGARELVERLEESNRATR QV AME ALGCK+DK E+AGMEAT+NR+K +++RME LE+G  Q+MA V+A+VQ L+E R+  D+ +  TR+A+G LEE+HGAWK ETLEL+KEVD ELA  AS++QLE KLDARVWEREWR ACERLD KVD+PEM A+AER+  V  D+V+L RESDQYSRFVAW+YSRG+AYEHN+  L+RT+GRLA++SL K++
Sbjct:    3 SASSASIASALPASD---PNFP-ASLQGVSARGLVSLERAEQILQRLIDTVNEQGLQISSIFLLLQTLVGTDTQPLPRSLLDVEGKFSRLSHRLERIEQAIQVPGLAPGVSIGEVVNANGVELNHAAEALLTKADKADVEVRQHKLEEEVAGVYAWAGARELVERLEESNRATRVQVHAMETALGCKLDKSELAGMEATVNRLKAFDARMETLERGHVQNMADVQAKVQALEEHRMETDRLVGATRRAVGELEERHGAWKMETLELLKEVDKELAATASVTQLERKLDARVWEREWRSACERLDQKVDVPEMVALAERLESVAGDLVKLSRESDQYSRFVAWYYSRGQAYEHNMQTLNRTLGRLARDSLLKHV 371          
BLAST of NO22G01420 vs. NCBI_GenBank
Match: XP_008873725.1 (hypothetical protein H310_09433 [Aphanomyces invadans] >ETV97516.1 hypothetical protein H310_09433 [Aphanomyces invadans])

HSP 1 Score: 75.9 bits (185), Expect = 3.600e-10
Identity = 87/382 (22.77%), Postives = 155/382 (40.58%), Query Frame = 0
Query:   37 LVSLERAEHILQRVIDTVNDQGLQISSL-----YLLLQTLVGTETNPLPRSLLNVEGNFSRLNHRLDRVEKAIHVPGVAPSVPIGEVVSTNGVELNHALDVLHKKANQADVEARQHKLEEEVAEVYAW----AGARELVERLEESNRATRTQVQAMEAALGCKVDKVEMAGMEATLNRIKIYNSRMEGLEQG-----------------------------------QAQDMARVRAEVQLLQERRIAADQ----QLEVTRKALGALEEKHGAWKRETLELMKEV--DGELAQMASLSQLEGKLDARVWEREWRLACERLDSKVDLPEMAAMAERVGGVEEDVVRLGRESDQYSRFVAWFYSRGEAYEHNLNALDRTIGRLA 369
            LV +  AE   + ++DT+  Q  +I  L      L+LQ  V +  N       NV    + L  R+D +E AI +P V  +  +G +V+ N  E+    + L +K + A VE    ++E +++             EL+ RL        T++  +EA +  K+DK E   M+A    +  +  R   +E                                     Q +D+  +RAE    Q    AA Q     + +    L  + + H  +   T   ++++   GE    +   +L+GK+    W+ + R     + +K  L   AA    V  ++E V R         RF+ W+++RG+AYEHN+  ++  + +L+
Sbjct:   14 LVDMRAAESTFKCLMDTLEAQANEIGQLKASVAALVLQNSVQSAWND------NVTITQATLMPRIDALEAAIKLPNVR-NATLGSIVAANYKEIVSMREKLQRKIDAAVVEDACRRVETKLSSALDTLRKDCVTLELISRLHMDQDELHTKLATVEAQIDSKMDKTEATRMDAVATTMHAFIPRCSEIEHSLQQLHEKLAASNAKCRQHDQHVSTETAHLRQLVSQQHRDVGALRAETTAGQATIEAAVQACKENISLCHNKLQTIRQAHADFAASTRSSLRQLTQTGERNFQSLRDELDGKVSRTDWDAQRREMEALVQTKTPLAVTAATKAVVDKLDEWVTRCDAHVQLSLRFIDWYFNRGDAYEHNMQVMEAQLKQLS 388          
BLAST of NO22G01420 vs. NCBI_GenBank
Match: XP_009844582.1 (hypothetical protein H257_17476 [Aphanomyces astaci] >ETV65927.1 hypothetical protein H257_17476 [Aphanomyces astaci])

HSP 1 Score: 69.7 bits (169), Expect = 2.600e-8
Identity = 85/389 (21.85%), Postives = 157/389 (40.36%), Query Frame = 0
Query:   32 VSAHGLVSLERAEHILQRVIDTVNDQGLQISSLYLLLQTLVGTETNPLPRSLLN--VEGNFSRLNHRLDRVEKAIHVPGVAPSVPIGEVVSTNGVELNHALDVLHKKANQADVEARQHKLEEEVAEVYAWAGAR----ELVERLEESNRATRTQVQAMEAALGCKVDKVEMAGMEATLNRIKIYNSRMEGLEQGQAQ----------------------------DMARVRAEVQLLQERRIAA-----------DQQLEVTRKALGALEEKHGAWKRETLELMKEVDGELAQMASLSQLEGKLDARVWEREWRLACERLDSKVDLPEMAAMAERVGGVEEDVVR----LGRESDQYS---RFVAWFYSRGEAYEHNLNALDRTIGRLA 369
            +S   LV +  AE   QR++DT+  Q   I     L  T+   E   + ++  N  + G  + L  R+D VE AI +P V  +  +G +V+ N  E+    + LH+K     VE    ++E  +   +          EL+  L     A   ++ A+E  +  K+DK+E+  +EA  +++  +  R   +E+   Q                             +A  RA++  L+    AA            + + +    +   +  H  +   T   + E+   L   A   +++ +L  +V   +W+     L++ +   E  A  + V  +++DV +     GR         RF+ WF+ RGEAYE NL  ++  +  L+
Sbjct:    4 MSLADLVDMRAAESTFQRLLDTLEHQAKDIDE---LKTTVAALERENVIQTAWNKDLHGTLASLTPRVDAVEAAIRLPNVR-NASLGSIVAANYKEIVSMREKLHRKVEPDVVEEACRRVETNMFSAFESLRKECVNLELLSSLHMDQDALHAKMAALEGQIDSKMDKMEVTRVEAMASKLHAFIPRCSEIERSLQQLDEKLTASSATCRHHEQLAALETAQLGHRLADHRADLTTLRTDTTAAHDAMDAVIQKCQRNIHLCLSKVQVAQRSHSEFAASTRTSVHELADALE--AHAQRIQNELGLKVNSCDWQTRANELEAAL---ETKAPLQAVTSLKKDVDKWADWAGRCDSHVQLSVRFIEWFFERGEAYEANLQLMEAQLKHLS 383          
The following BLAST results are available for this feature:
BLAST of NO22G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21487.11.200e-13569.97hypothetical protein Naga_100019g62 [Nannochlorops... [more]
XP_008873725.13.600e-1022.77hypothetical protein H310_09433 [Aphanomyces invad... [more]
XP_009844582.12.600e-821.85hypothetical protein H257_17476 [Aphanomyces astac... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004119NSK004119Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01420.1NO22G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595776gene_7148Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g62gene8932Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01420.1NO22G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01420 ID=NO22G01420|Name=NO22G01420|organism=Nannochloropsis oceanica|type=gene|length=2116bp
GGGGGGGGTAAAGAGTGGCTGTTGTTGTCCTGCCCAGGAGGCATGGAAGA
ACTTCTTTGACATTTGTTGCTGATTGCGTCATCGGGCCTCAATTTGCCGC
CCCGACTCAAAGAGCTTTTAGGACCCTTACCCAACGCAACTCATCAAACC
CATCCCCATCACCAGCAACGAGAGGCACGTATGCAAGGACTGGGCCTTAT
ACTGCCAGTTGCCACTGCCTCCCTCGTGTCGTTGGTTGGTCTTGCCGCCA
ACGCTTCTGCCGGCCCACAAGAACTTAAGGTAATTTCGCTTGCCCCGCCA
CCCAACTACTAAAAGCCACTCTACGGAATACGAATCATCAAAAGTTTCTC
GTCCATGTCTGCCTCCTCGTCATCGGCCCAAGGCCAAGCCCTTTCACCGC
CTTCCGACGAAGAGGCCACTAACGGCCCGGGCGCCTCGCTGCACGGCGTG
AGCGCGCATGGCCTGGTAAGTCTGGAGCGGGCCGAGCACATCTTACAACG
GGTGATTGACACAGTCAATGACCAAGGCCTACAAATTTCCAGCCTGTACC
TGCTGTTACAGACGCTGGTGGGCACTGAGACCAACCCCTTGCCCCGTAGC
CTCTTGAATGTAGAGGGCAATTTTTCCCGCCTCAACCATCGGCTAGATCG
AGTCGAGAAAGCAATTCATGTCCCGGGGGTGGCTCCCAGCGTGCCTATCG
GCGAAGTCGTGAGTACCAACGGAGTAGAACTCAATCATGCCCTGGATGTG
CTGCACAAAAAGGCGAACCAAGCAGACGTAGAAGCGCGCCAGCACAAGTT
AGAGGAGGAAGTGGCCGAGGTTTATGCGTGGGCAGGGGCTCGTGAGCTGG
TCGAGCGATTGGAGGAATCGAATCGGGCGACACGTACGCAGGTGCAAGCT
ATGGAAGCAGCGTTGGGCTGTAAGGTGGACAAGGTGGAGATGGCGGGGAT
GGAGGCGACGTTGAATCGTATCAAGATATATAATAGTCGAATGGAGGGGT
TGGAGCAGGGCCAAGCCCAGGACATGGCGCGTGTTCGGGCGGAGGTACAA
CTGCTGCAGGAACGACGCATTGCGGCGGATCAGCAGTTGGAGGTGACGAG
GAAGGCGCTGGGAGCTCTGGAGGAAAAGCATGGGGCGTGGAAGCGGGAGA
CATTGGAATTGATGAAAGAGgttggtgatggatagtggaggggaatgcgg
aggagtagaaggaggggagaagaaaatggaaaaggaagaggaggaatagg
aaccggacgacgataaaatggaccacgatgaggaggaggagatagatggg
tggaaaggccagcctgacatcgaggaaggtccaggcggaaagacggaaat
tcttgtactcctcactgaagactcaccctcgttcactccctccttcctcc
atcttttctccctcctctagGTTGATGGAGAGCTGGCACAGATGGCATCA
TTATCTCAACTGGAAGGCAAGCTTGATGCAAGAGTGTGGGAGAGGGAGTG
GAGGTTGGCTTGTGAGCGATTAGATTCAAAGGTAGATCTGCCAGAGATGG
CGGCAATGGCGGAACGTGTGGGGGGGGTTGAGGAGGACGTGGTGCGATTG
GGGAGGGAGAGCGATCAGTACTCGCGGTTTGTGGCCTGGTTCTATTCGAG
AGGGGAGGCGTATGAGCATAATTTGAATGCGCTCGATAGAACGATCGGGA
GGTTGGCTAAGGAGTCGTTGGGGAAGTACCTAGAAGGGAGGTGGGGAGGT
CGAGAGCGCGAGAGAATTCAGGAGCCGGAAGTAGACGAGGCGGAGAGGGA
GGAAGAAAGCGATTTAGCATTCTCGTCGTCGTCATCGGAGCGGTCGTCCT
CACCGGGGTTTGGGGGGAGGAGAGGAGGAGGGCGGCTTGAAGGGGGGAAG
GAGAGGGAGGAGACACGCACGCTTTCGCCGGTAGCGTAGGAGATGATTGC
AGCAGAGACGCTGTGAGTATGGAGGAATAAATGGCTTTAATACGTAAAAA
TACATAGATGGGCACAGGAACTTATAACGTAATCCCTCCCGAAAGTAAAA
CAATTGATGCAATATCGACTCACCAACCACCTTGAGGCTTCTAGTCTACC
ATTTCACGCTTCTTTC
back to top

protein sequence of NO22G01420.1

>NO22G01420.1-protein ID=NO22G01420.1-protein|Name=NO22G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MSASSSSAQGQALSPPSDEEATNGPGASLHGVSAHGLVSLERAEHILQRV
IDTVNDQGLQISSLYLLLQTLVGTETNPLPRSLLNVEGNFSRLNHRLDRV
EKAIHVPGVAPSVPIGEVVSTNGVELNHALDVLHKKANQADVEARQHKLE
EEVAEVYAWAGARELVERLEESNRATRTQVQAMEAALGCKVDKVEMAGME
ATLNRIKIYNSRMEGLEQGQAQDMARVRAEVQLLQERRIAADQQLEVTRK
ALGALEEKHGAWKRETLELMKEVDGELAQMASLSQLEGKLDARVWEREWR
LACERLDSKVDLPEMAAMAERVGGVEEDVVRLGRESDQYSRFVAWFYSRG
EAYEHNLNALDRTIGRLAKESLGKYLEGRWGGRERERIQEPEVDEAEREE
ESDLAFSSSSSERSSSPGFGGRRGGGRLEGGKEREETRTLSPVA*
back to top
Synonyms
Publications