NO22G01420.1, NO22G01420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01420.1
Unique NameNO22G01420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1866
Alignment locationchr22:419190..421305 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:419190..421305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01420.1 vs.
Match: EWM21487.1 (hypothetical protein Naga_100019g62 [Nannochloropsis gaditana])

HSP 1 Score: 493.8 bits (1270), Expect = 5.500e-136
Identity = 275/421 (65.32%), Postives = 335/421 (79.57%), Query Frame = 0 
Query:    4 SSSSAQGQALSPPSDEEATNGPGASLHGVSAHGLVSLERAEHILQRVIDTVNDQGLQISSLYLLLQTLVGTETNPLPRSLLNVEGNFSRLNHRLDRVEKAIHVPGVAPSVPIGEVVSTNGVELNHALDVLHKKANQADVEARQHKLEEEVAEVYAWAGARELVERLEESNRATRTQVQAMEAALGCKVDKVEMAGMEATLNRIKIYNSRMEGLEQGQAQDMARVRAEVQLLQERRIAADQQLEVTRKALGALEEKHGAWKRETLELMKEVDGELAQMASLSQLEGKLDARVWEREWRLACERLDSKVDLPEMAAMAERVGGVEEDVVRLGRESDQYSRFVAWFYSRGEAYEHNLNALDRTIGRLAKESLGKYL------EGRWGGRERERIQEPEVDEAERE-EESDLAFSSSSSERSSSP 418
            S+SSA   +  P SD    N P ASL GVSA GLVSLERAE ILQR+IDTVN+QGLQISS++LLLQTLVGT+T PLPRSLL+VEG FSRL+HRL+R+E+AI VPG+AP V IGEVV+ NGVELNHA + L  KA++ADVE RQHKLEEEVA VYAWAGARELVERLEESNRATR QV AME ALGCK+DK E+AGMEAT+NR+K +++RME LE+G  Q+MA V+A+VQ L+E R+  D+ +  TR+A+G LEE+HGAWK ETLEL+KEVD ELA  AS++QLE KLDARVWEREWR ACERLD KVD+PEM A+AER+  V  D+V+L RESDQYSRFVAW+YSRG+AYEHN+  L+RT+GRLA++SL K++       G  GG+  E   + E    +R  ++ +L  SSSSS+ +S P
Sbjct:    3 SASSASIASALPASDP---NFP-ASLQGVSARGLVSLERAEQILQRLIDTVNEQGLQISSIFLLLQTLVGTDTQPLPRSLLDVEGKFSRLSHRLERIEQAIQVPGLAPGVSIGEVVNANGVELNHAAEALLTKADKADVEVRQHKLEEEVAGVYAWAGARELVERLEESNRATRVQVHAMETALGCKLDKSELAGMEATVNRLKAFDARMETLERGHVQNMADVQAKVQALEEHRMETDRLVGATRRAVGELEERHGAWKMETLELLKEVDKELAATASVTQLERKLDARVWEREWRSACERLDQKVDVPEMVALAERLESVAGDLVKLSRESDQYSRFVAWYYSRGQAYEHNMQTLNRTLGRLARDSLLKHVASAEVRSGIGGGQRGEYGSQVENGIRDRGLDDRELILSSSSSDTASPP 419
The following BLAST results are available for this feature:
BLAST of NO22G01420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21487.15.500e-13665.32hypothetical protein Naga_100019g62 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01420NO22G01420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01420.1NO22G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01420.1.cds1NO22G01420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01420.1.cds2NO22G01420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01420.1 ID=NO22G01420.1|Name=NO22G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp
GGGGGGGGTAAAGAGTGGCTGTTGTTGTCCTGCCCAGGAGGCATGGAAGA
ACTTCTTTGACATTTGTTGCTGATTGCGTCATCGGGCCTCAATTTGCCGC
CCCGACTCAAAGAGCTTTTAGGACCCTTACCCAACGCAACTCATCAAACC
CATCCCCATCACCAGCAACGAGAGGCACGTATGCAAGGACTGGGCCTTAT
ACTGCCAGTTGCCACTGCCTCCCTCGTGTCGTTGGTTGGTCTTGCCGCCA
ACGCTTCTGCCGGCCCACAAGAACTTAAGGTAATTTCGCTTGCCCCGCCA
CCCAACTACTAAAAGCCACTCTACGGAATACGAATCATCAAAAGTTTCTC
GTCCATGTCTGCCTCCTCGTCATCGGCCCAAGGCCAAGCCCTTTCACCGC
CTTCCGACGAAGAGGCCACTAACGGCCCGGGCGCCTCGCTGCACGGCGTG
AGCGCGCATGGCCTGGTAAGTCTGGAGCGGGCCGAGCACATCTTACAACG
GGTGATTGACACAGTCAATGACCAAGGCCTACAAATTTCCAGCCTGTACC
TGCTGTTACAGACGCTGGTGGGCACTGAGACCAACCCCTTGCCCCGTAGC
CTCTTGAATGTAGAGGGCAATTTTTCCCGCCTCAACCATCGGCTAGATCG
AGTCGAGAAAGCAATTCATGTCCCGGGGGTGGCTCCCAGCGTGCCTATCG
GCGAAGTCGTGAGTACCAACGGAGTAGAACTCAATCATGCCCTGGATGTG
CTGCACAAAAAGGCGAACCAAGCAGACGTAGAAGCGCGCCAGCACAAGTT
AGAGGAGGAAGTGGCCGAGGTTTATGCGTGGGCAGGGGCTCGTGAGCTGG
TCGAGCGATTGGAGGAATCGAATCGGGCGACACGTACGCAGGTGCAAGCT
ATGGAAGCAGCGTTGGGCTGTAAGGTGGACAAGGTGGAGATGGCGGGGAT
GGAGGCGACGTTGAATCGTATCAAGATATATAATAGTCGAATGGAGGGGT
TGGAGCAGGGCCAAGCCCAGGACATGGCGCGTGTTCGGGCGGAGGTACAA
CTGCTGCAGGAACGACGCATTGCGGCGGATCAGCAGTTGGAGGTGACGAG
GAAGGCGCTGGGAGCTCTGGAGGAAAAGCATGGGGCGTGGAAGCGGGAGA
CATTGGAATTGATGAAAGAGGTTGATGGAGAGCTGGCACAGATGGCATCA
TTATCTCAACTGGAAGGCAAGCTTGATGCAAGAGTGTGGGAGAGGGAGTG
GAGGTTGGCTTGTGAGCGATTAGATTCAAAGGTAGATCTGCCAGAGATGG
CGGCAATGGCGGAACGTGTGGGGGGGGTTGAGGAGGACGTGGTGCGATTG
GGGAGGGAGAGCGATCAGTACTCGCGGTTTGTGGCCTGGTTCTATTCGAG
AGGGGAGGCGTATGAGCATAATTTGAATGCGCTCGATAGAACGATCGGGA
GGTTGGCTAAGGAGTCGTTGGGGAAGTACCTAGAAGGGAGGTGGGGAGGT
CGAGAGCGCGAGAGAATTCAGGAGCCGGAAGTAGACGAGGCGGAGAGGGA
GGAAGAAAGCGATTTAGCATTCTCGTCGTCGTCATCGGAGCGGTCGTCCT
CACCGGGGTTTGGGGGGAGGAGAGGAGGAGGGCGGCTTGAAGGGGGGAAG
GAGAGGGAGGAGACACGCACGCTTTCGCCGGTAGCGTAGGAGATGATTGC
AGCAGAGACGCTGTGAGTATGGAGGAATAAATGGCTTTAATACGTAAAAA
TACATAGATGGGCACAGGAACTTATAACGTAATCCCTCCCGAAAGTAAAA
CAATTGATGCAATATCGACTCACCAACCACCTTGAGGCTTCTAGTCTACC
ATTTCACGCTTCTTTC
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protein sequence of NO22G01420.1

>NO22G01420.1-protein ID=NO22G01420.1-protein|Name=NO22G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MSASSSSAQGQALSPPSDEEATNGPGASLHGVSAHGLVSLERAEHILQRV
IDTVNDQGLQISSLYLLLQTLVGTETNPLPRSLLNVEGNFSRLNHRLDRV
EKAIHVPGVAPSVPIGEVVSTNGVELNHALDVLHKKANQADVEARQHKLE
EEVAEVYAWAGARELVERLEESNRATRTQVQAMEAALGCKVDKVEMAGME
ATLNRIKIYNSRMEGLEQGQAQDMARVRAEVQLLQERRIAADQQLEVTRK
ALGALEEKHGAWKRETLELMKEVDGELAQMASLSQLEGKLDARVWEREWR
LACERLDSKVDLPEMAAMAERVGGVEEDVVRLGRESDQYSRFVAWFYSRG
EAYEHNLNALDRTIGRLAKESLGKYLEGRWGGRERERIQEPEVDEAEREE
ESDLAFSSSSSERSSSPGFGGRRGGGRLEGGKEREETRTLSPVA*
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mRNA from alignment at chr22:419190..421305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01420.1 ID=NO22G01420.1|Name=NO22G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp|location=Sequence derived from alignment at chr22:419190..421305- (Nannochloropsis oceanica)
GGGGGGGGTAAAGAGTGGCTGTTGTTGTCCTGCCCAGGAGGCATGGAAGA
ACTTCTTTGACATTTGTTGCTGATTGCGTCATCGGGCCTCAATTTGCCGC
CCCGACTCAAAGAGCTTTTAGGACCCTTACCCAACGCAACTCATCAAACC
CATCCCCATCACCAGCAACGAGAGGCACGTATGCAAGGACTGGGCCTTAT
ACTGCCAGTTGCCACTGCCTCCCTCGTGTCGTTGGTTGGTCTTGCCGCCA
ACGCTTCTGCCGGCCCACAAGAACTTAAGGTAATTTCGCTTGCCCCGCCA
CCCAACTACTAAAAGCCACTCTACGGAATACGAATCATCAAAAGTTTCTC
GTCCATGTCTGCCTCCTCGTCATCGGCCCAAGGCCAAGCCCTTTCACCGC
CTTCCGACGAAGAGGCCACTAACGGCCCGGGCGCCTCGCTGCACGGCGTG
AGCGCGCATGGCCTGGTAAGTCTGGAGCGGGCCGAGCACATCTTACAACG
GGTGATTGACACAGTCAATGACCAAGGCCTACAAATTTCCAGCCTGTACC
TGCTGTTACAGACGCTGGTGGGCACTGAGACCAACCCCTTGCCCCGTAGC
CTCTTGAATGTAGAGGGCAATTTTTCCCGCCTCAACCATCGGCTAGATCG
AGTCGAGAAAGCAATTCATGTCCCGGGGGTGGCTCCCAGCGTGCCTATCG
GCGAAGTCGTGAGTACCAACGGAGTAGAACTCAATCATGCCCTGGATGTG
CTGCACAAAAAGGCGAACCAAGCAGACGTAGAAGCGCGCCAGCACAAGTT
AGAGGAGGAAGTGGCCGAGGTTTATGCGTGGGCAGGGGCTCGTGAGCTGG
TCGAGCGATTGGAGGAATCGAATCGGGCGACACGTACGCAGGTGCAAGCT
ATGGAAGCAGCGTTGGGCTGTAAGGTGGACAAGGTGGAGATGGCGGGGAT
GGAGGCGACGTTGAATCGTATCAAGATATATAATAGTCGAATGGAGGGGT
TGGAGCAGGGCCAAGCCCAGGACATGGCGCGTGTTCGGGCGGAGGTACAA
CTGCTGCAGGAACGACGCATTGCGGCGGATCAGCAGTTGGAGGTGACGAG
GAAGGCGCTGGGAGCTCTGGAGGAAAAGCATGGGGCGTGGAAGCGGGAGA
CATTGGAATTGATGAAAGAGGTTGGTGATGGATAGTGGAGGGGAATGCGG
AGGAGTAGAAGGAGGGGAGAAGAAAATGGAAAAGGAAGAGGAGGAATAGG
AACCGGACGACGATAAAATGGACCACGATGAGGAGGAGGAGATAGATGGG
TGGAAAGGCCAGCCTGACATCGAGGAAGGTCCAGGCGGAAAGACGGAAAT
TCTTGTACTCCTCACTGAAGACTCACCCTCGTTCACTCCCTCCTTCCTCC
ATCTTTTCTCCCTCCTCTAGGTTGATGGAGAGCTGGCACAGATGGCATCA
TTATCTCAACTGGAAGGCAAGCTTGATGCAAGAGTGTGGGAGAGGGAGTG
GAGGTTGGCTTGTGAGCGATTAGATTCAAAGGTAGATCTGCCAGAGATGG
CGGCAATGGCGGAACGTGTGGGGGGGGTTGAGGAGGACGTGGTGCGATTG
GGGAGGGAGAGCGATCAGTACTCGCGGTTTGTGGCCTGGTTCTATTCGAG
AGGGGAGGCGTATGAGCATAATTTGAATGCGCTCGATAGAACGATCGGGA
GGTTGGCTAAGGAGTCGTTGGGGAAGTACCTAGAAGGGAGGTGGGGAGGT
CGAGAGCGCGAGAGAATTCAGGAGCCGGAAGTAGACGAGGCGGAGAGGGA
GGAAGAAAGCGATTTAGCATTCTCGTCGTCGTCATCGGAGCGGTCGTCCT
CACCGGGGTTTGGGGGGAGGAGAGGAGGAGGGCGGCTTGAAGGGGGGAAG
GAGAGGGAGGAGACACGCACGCTTTCGCCGGTAGCGTAGGAGATGATTGC
AGCAGAGACGCTGTGAGTATGGAGGAATAAATGGCTTTAATACGTAAAAA
TACATAGATGGGCACAGGAACTTATAACGTAATCCCTCCCGAAAGTAAAA
CAATTGATGCAATATCGACTCACCAACCACCTTGAGGCTTCTAGTCTACC
ATTTCACGCTTCTTTC
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Coding sequence (CDS) from alignment at chr22:419190..421305-

>NO22G01420.1 ID=NO22G01420.1|Name=NO22G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr22:419190..421305- (Nannochloropsis oceanica)
ATGTCTGCCTCCTCGTCATCGGCCCAAGGCCAAGCCCTTTCACCGCCTTC
CGACGAAGAGGCCACTAACGGCCCGGGCGCCTCGCTGCACGGCGTGAGCG
CGCATGGCCTGGTAAGTCTGGAGCGGGCCGAGCACATCTTACAACGGGTG
ATTGACACAGTCAATGACCAAGGCCTACAAATTTCCAGCCTGTACCTGCT
GTTACAGACGCTGGTGGGCACTGAGACCAACCCCTTGCCCCGTAGCCTCT
TGAATGTAGAGGGCAATTTTTCCCGCCTCAACCATCGGCTAGATCGAGTC
GAGAAAGCAATTCATGTCCCGGGGGTGGCTCCCAGCGTGCCTATCGGCGA
AGTCGTGAGTACCAACGGAGTAGAACTCAATCATGCCCTGGATGTGCTGC
ACAAAAAGGCGAACCAAGCAGACGTAGAAGCGCGCCAGCACAAGTTAGAG
GAGGAAGTGGCCGAGGTTTATGCGTGGGCAGGGGCTCGTGAGCTGGTCGA
GCGATTGGAGGAATCGAATCGGGCGACACGTACGCAGGTGCAAGCTATGG
AAGCAGCGTTGGGCTGTAAGGTGGACAAGGTGGAGATGGCGGGGATGGAG
GCGACGTTGAATCGTATCAAGATATATAATAGTCGAATGGAGGGGTTGGA
GCAGGGCCAAGCCCAGGACATGGCGCGTGTTCGGGCGGAGGTACAACTGC
TGCAGGAACGACGCATTGCGGCGGATCAGCAGTTGGAGGTGACGAGGAAG
GCGCTGGGAGCTCTGGAGGAAAAGCATGGGGCGTGGAAGCGGGAGACATT
GGAATTGATGAAAGAGGTTGATGGAGAGCTGGCACAGATGGCATCATTAT
CTCAACTGGAAGGCAAGCTTGATGCAAGAGTGTGGGAGAGGGAGTGGAGG
TTGGCTTGTGAGCGATTAGATTCAAAGGTAGATCTGCCAGAGATGGCGGC
AATGGCGGAACGTGTGGGGGGGGTTGAGGAGGACGTGGTGCGATTGGGGA
GGGAGAGCGATCAGTACTCGCGGTTTGTGGCCTGGTTCTATTCGAGAGGG
GAGGCGTATGAGCATAATTTGAATGCGCTCGATAGAACGATCGGGAGGTT
GGCTAAGGAGTCGTTGGGGAAGTACCTAGAAGGGAGGTGGGGAGGTCGAG
AGCGCGAGAGAATTCAGGAGCCGGAAGTAGACGAGGCGGAGAGGGAGGAA
GAAAGCGATTTAGCATTCTCGTCGTCGTCATCGGAGCGGTCGTCCTCACC
GGGGTTTGGGGGGAGGAGAGGAGGAGGGCGGCTTGAAGGGGGGAAGGAGA
GGGAGGAGACACGCACGCTTTCGCCGGTAGCGTAG
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Synonyms
Publications