NO22G00730, NO22G00730 (gene) Nannochloropsis oceanica

Overview
NameNO22G00730
Unique NameNO22G00730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1022
Alignment locationchr22:242113..243134 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:242113..243134 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO22G00730 vs. NCBI_GenBank
Match: XP_005855289.1 (hypothetical protein NGA_0126500, partial [Nannochloropsis gaditana CCMP526] >EKU21067.1 hypothetical protein NGA_0126500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 165.6 bits (418), Expect = 1.800e-37
Identity = 81/106 (76.42%), Postives = 93/106 (87.74%), Query Frame = 0 
Query:  127 PGTARYDSTLEELIVDERKSALPRLEDLKILKSGKAVAADSGKTGGKPGILMPRELEEMKQREKAKEATKGAPPYFDTMTKITWGAIAFMVVTEVVVAFIPKASTI 233
            P  + YD++LEELIVDERKSALPRLEDLK+LKSGKAV  D+G TGGKPGILMPRELEEMKQ+EKAK+ATKGAP YFDTMTK+TW AIA +++ EVV   IPKAST+
Sbjct:  150 PSPSSYDASLEELIVDERKSALPRLEDLKMLKSGKAVGPDTGSTGGKPGILMPRELEEMKQKEKAKQATKGAPAYFDTMTKVTWAAIALLILAEVVAQVIPKASTV 255
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BLAST of NO22G00730 vs. NCBI_GenBank
Match: EWM21428.1 (hypothetical protein Naga_100147g16 [Nannochloropsis gaditana])

HSP 1 Score: 165.6 bits (418), Expect = 1.800e-37
Identity = 81/106 (76.42%), Postives = 93/106 (87.74%), Query Frame = 0 
Query:  127 PGTARYDSTLEELIVDERKSALPRLEDLKILKSGKAVAADSGKTGGKPGILMPRELEEMKQREKAKEATKGAPPYFDTMTKITWGAIAFMVVTEVVVAFIPKASTI 233
            P  + YD++LEELIVDERKSALPRLEDLK+LKSGKAV  D+G TGGKPGILMPRELEEMKQ+EKAK+ATKGAP YFDTMTK+TW AIA +++ EVV   IPKAST+
Sbjct:  106 PSPSSYDASLEELIVDERKSALPRLEDLKMLKSGKAVGPDTGSTGGKPGILMPRELEEMKQKEKAKQATKGAPAYFDTMTKVTWAAIALLILAEVVAQVIPKASTV 211
The following BLAST results are available for this feature:
BLAST of NO22G00730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855289.11.800e-3776.42hypothetical protein NGA_0126500, partial [Nannoch... [more]
EWM21428.11.800e-3776.42hypothetical protein Naga_100147g16 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004194NSK004194Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00730.1NO22G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595506gene_7071Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100147g16gene9005Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00730.1NO22G00730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00730 ID=NO22G00730|Name=NO22G00730|organism=Nannochloropsis oceanica|type=gene|length=1022bp
ATGCCCAGGCCACAACATTTGCACGCTGCCATCCTCTTCTTGGCGCTGAC
CCTCTACTATTTCCTACCTGCCCGCGCCTTTTTCCTTGCGCCTTTACCTC
CTCAACAGTTGTCCTTGTCGTCCGGCCGATTAAGTGCTTCATCCTCTGCC
GCAGCCCCTGCCATAACAGgtaggtgtcgactttgtgagaggaaaaagag
atacgagcgtggtatcaccgtttgcttcggtactcttttcgcctgtcttt
gtgcgtgcttacgttcgtttatctccgccctcggttgctctccatcctct
catccccctcaataatacacaagcagtgaccactgatatcacccaccctt
tgattaagcttcccattttcgctgaaccacaatacaccgattttctttgc
tatatcctatctctcatcccatcaacggcaaccaccaacactcaacgctc
cccacaccctcctcccctcttcactatacacagACACTTCCTTCTCCTCC
TCCTCCTCCTCCTCCTTATCCTCCATCCGCCGACTACTCTTCCGTCTTCA
CAGTACCCCCAGCCCTGACAGCGAGCCAGACGAGCAAAACAAGCGGTCGA
AACGCCGACGGCGCAAGGCAGGCAGTGGTCCCCCTTCCTCGTCCTCGTCT
TCCACGAAGTCCTCCACCGCGTCCTCGCTCCCCCTTGCTGGTCCGGGGAC
AGCTCGGTATGATTCCACTCTGGAAGAGCTTATTGTCGACGAACGGAAAT
CAGCCTTGCCTCGTCTAGAAGACCTGAAGATTCTAAAGAGCGGAAAGGCC
GTCGCGGCGGACTCAGGGAAGACGGGAGGGAAACCTGGTATTCTCATGCC
TCGAGAGCTGGAAGAAATGAAACAGAGGGAGAAGGCCAAGGAAGCTACCA
AGGGGGCACCGCCTTATTTCGATACGATGACAAAGATTACGTGGGGGGCG
ATTGCGTTTATGGTGGTGACCGAGGTGGTGGTGGCGTTTATTCCCAAGGC
GAGTACCATACCGACGCCGTAA
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protein sequence of NO22G00730.1

>NO22G00730.1-protein ID=NO22G00730.1-protein|Name=NO22G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MPRPQHLHAAILFLALTLYYFLPARAFFLAPLPPQQLSLSSGRLSASSSA
AAPAITDTSFSSSSSSSLSSIRRLLFRLHSTPSPDSEPDEQNKRSKRRRR
KAGSGPPSSSSSSTKSSTASSLPLAGPGTARYDSTLEELIVDERKSALPR
LEDLKILKSGKAVAADSGKTGGKPGILMPRELEEMKQREKAKEATKGAPP
YFDTMTKITWGAIAFMVVTEVVVAFIPKASTIPTP*
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Synonyms
Publications