NO22G00730.1, NO22G00730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00730.1
Unique NameNO22G00730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length708
Alignment locationchr22:242113..243134 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:242113..243134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00730.1 vs.
Match: EWM21428.1 (hypothetical protein Naga_100147g16 [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 9.100e-45
Identity = 105/158 (66.46%), Postives = 121/158 (76.58%), Query Frame = 0 
Query:   75 LFRLHSTPSPDSEPDEQNKRSKRRRRKAGSGPPSSSSSSTKSSTASSLPLAGPGTARYDSTLEELIVDERKSALPRLEDLKILKSGKAVAADSGKTGGKPGILMPRELEEMKQREKAKEATKGAPPYFDTMTKITWGAIAFMVVTEVVVAFIPKASTI 233
            L RLHS+ S +S+ DE+NKRSKRRRRK G     SS            P A P  + YD++LEELIVDERKSALPRLEDLK+LKSGKAV  D+G TGGKPGILMPRELEEMKQ+EKAK+ATKGAP YFDTMTK+TW AIA +++ EVV   IPKAST+
Sbjct:   66 LSRLHSSSSSNSQSDEKNKRSKRRRRKQGGASSPSS------------PSALPSPSSYDASLEELIVDERKSALPRLEDLKMLKSGKAVGPDTGSTGGKPGILMPRELEEMKQKEKAKQATKGAPAYFDTMTKVTWAAIALLILAEVVAQVIPKASTV 211
The following BLAST results are available for this feature:
BLAST of NO22G00730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21428.19.100e-4566.46hypothetical protein Naga_100147g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00730NO22G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00730.1NO22G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00730.1.cds1NO22G00730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00730.1.cds2NO22G00730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00730.1 ID=NO22G00730.1|Name=NO22G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=708bp
ATGCCCAGGCCACAACATTTGCACGCTGCCATCCTCTTCTTGGCGCTGAC
CCTCTACTATTTCCTACCTGCCCGCGCCTTTTTCCTTGCGCCTTTACCTC
CTCAACAGTTGTCCTTGTCGTCCGGCCGATTAAGTGCTTCATCCTCTGCC
GCAGCCCCTGCCATAACAGACACTTCCTTCTCCTCCTCCTCCTCCTCCTC
CTTATCCTCCATCCGCCGACTACTCTTCCGTCTTCACAGTACCCCCAGCC
CTGACAGCGAGCCAGACGAGCAAAACAAGCGGTCGAAACGCCGACGGCGC
AAGGCAGGCAGTGGTCCCCCTTCCTCGTCCTCGTCTTCCACGAAGTCCTC
CACCGCGTCCTCGCTCCCCCTTGCTGGTCCGGGGACAGCTCGGTATGATT
CCACTCTGGAAGAGCTTATTGTCGACGAACGGAAATCAGCCTTGCCTCGT
CTAGAAGACCTGAAGATTCTAAAGAGCGGAAAGGCCGTCGCGGCGGACTC
AGGGAAGACGGGAGGGAAACCTGGTATTCTCATGCCTCGAGAGCTGGAAG
AAATGAAACAGAGGGAGAAGGCCAAGGAAGCTACCAAGGGGGCACCGCCT
TATTTCGATACGATGACAAAGATTACGTGGGGGGCGATTGCGTTTATGGT
GGTGACCGAGGTGGTGGTGGCGTTTATTCCCAAGGCGAGTACCATACCGA
CGCCGTAA
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protein sequence of NO22G00730.1

>NO22G00730.1-protein ID=NO22G00730.1-protein|Name=NO22G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MPRPQHLHAAILFLALTLYYFLPARAFFLAPLPPQQLSLSSGRLSASSSA
AAPAITDTSFSSSSSSSLSSIRRLLFRLHSTPSPDSEPDEQNKRSKRRRR
KAGSGPPSSSSSSTKSSTASSLPLAGPGTARYDSTLEELIVDERKSALPR
LEDLKILKSGKAVAADSGKTGGKPGILMPRELEEMKQREKAKEATKGAPP
YFDTMTKITWGAIAFMVVTEVVVAFIPKASTIPTP*
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mRNA from alignment at chr22:242113..243134+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00730.1 ID=NO22G00730.1|Name=NO22G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1022bp|location=Sequence derived from alignment at chr22:242113..243134+ (Nannochloropsis oceanica)
ATGCCCAGGCCACAACATTTGCACGCTGCCATCCTCTTCTTGGCGCTGAC
CCTCTACTATTTCCTACCTGCCCGCGCCTTTTTCCTTGCGCCTTTACCTC
CTCAACAGTTGTCCTTGTCGTCCGGCCGATTAAGTGCTTCATCCTCTGCC
GCAGCCCCTGCCATAACAGGTAGGTGTCGACTTTGTGAGAGGAAAAAGAG
ATACGAGCGTGGTATCACCGTTTGCTTCGGTACTCTTTTCGCCTGTCTTT
GTGCGTGCTTACGTTCGTTTATCTCCGCCCTCGGTTGCTCTCCATCCTCT
CATCCCCCTCAATAATACACAAGCAGTGACCACTGATATCACCCACCCTT
TGATTAAGCTTCCCATTTTCGCTGAACCACAATACACCGATTTTCTTTGC
TATATCCTATCTCTCATCCCATCAACGGCAACCACCAACACTCAACGCTC
CCCACACCCTCCTCCCCTCTTCACTATACACAGACACTTCCTTCTCCTCC
TCCTCCTCCTCCTCCTTATCCTCCATCCGCCGACTACTCTTCCGTCTTCA
CAGTACCCCCAGCCCTGACAGCGAGCCAGACGAGCAAAACAAGCGGTCGA
AACGCCGACGGCGCAAGGCAGGCAGTGGTCCCCCTTCCTCGTCCTCGTCT
TCCACGAAGTCCTCCACCGCGTCCTCGCTCCCCCTTGCTGGTCCGGGGAC
AGCTCGGTATGATTCCACTCTGGAAGAGCTTATTGTCGACGAACGGAAAT
CAGCCTTGCCTCGTCTAGAAGACCTGAAGATTCTAAAGAGCGGAAAGGCC
GTCGCGGCGGACTCAGGGAAGACGGGAGGGAAACCTGGTATTCTCATGCC
TCGAGAGCTGGAAGAAATGAAACAGAGGGAGAAGGCCAAGGAAGCTACCA
AGGGGGCACCGCCTTATTTCGATACGATGACAAAGATTACGTGGGGGGCG
ATTGCGTTTATGGTGGTGACCGAGGTGGTGGTGGCGTTTATTCCCAAGGC
GAGTACCATACCGACGCCGTAA
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Coding sequence (CDS) from alignment at chr22:242113..243134+

>NO22G00730.1 ID=NO22G00730.1|Name=NO22G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at chr22:242113..243134+ (Nannochloropsis oceanica)
ATGCCCAGGCCACAACATTTGCACGCTGCCATCCTCTTCTTGGCGCTGAC
CCTCTACTATTTCCTACCTGCCCGCGCCTTTTTCCTTGCGCCTTTACCTC
CTCAACAGTTGTCCTTGTCGTCCGGCCGATTAAGTGCTTCATCCTCTGCC
GCAGCCCCTGCCATAACAGACACTTCCTTCTCCTCCTCCTCCTCCTCCTC
CTTATCCTCCATCCGCCGACTACTCTTCCGTCTTCACAGTACCCCCAGCC
CTGACAGCGAGCCAGACGAGCAAAACAAGCGGTCGAAACGCCGACGGCGC
AAGGCAGGCAGTGGTCCCCCTTCCTCGTCCTCGTCTTCCACGAAGTCCTC
CACCGCGTCCTCGCTCCCCCTTGCTGGTCCGGGGACAGCTCGGTATGATT
CCACTCTGGAAGAGCTTATTGTCGACGAACGGAAATCAGCCTTGCCTCGT
CTAGAAGACCTGAAGATTCTAAAGAGCGGAAAGGCCGTCGCGGCGGACTC
AGGGAAGACGGGAGGGAAACCTGGTATTCTCATGCCTCGAGAGCTGGAAG
AAATGAAACAGAGGGAGAAGGCCAAGGAAGCTACCAAGGGGGCACCGCCT
TATTTCGATACGATGACAAAGATTACGTGGGGGGCGATTGCGTTTATGGT
GGTGACCGAGGTGGTGGTGGCGTTTATTCCCAAGGCGAGTACCATACCGA
CGCCGTAA
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Synonyms
Publications