NO22G00490, NO22G00490 (gene) Nannochloropsis oceanica

Overview
NameNO22G00490
Unique NameNO22G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1301
Alignment locationchr22:167798..169098 +

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Properties
Property NameValue
DescriptionAdaptin ear-binding coat-associated protein 1 NECAP-1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:167798..169098 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006897endocytosis
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR012466NECAP-1
Homology
BLAST of NO22G00490 vs. NCBI_GenBank
Match: EWM21392.1 (Adaptin ear-binding coat-associated protein 1 NECAP-1 [Nannochloropsis gaditana])

HSP 1 Score: 232.3 bits (591), Expect = 1.900e-57
Identity = 121/164 (73.78%), Postives = 132/164 (80.49%), Query Frame = 0
Query:   65 PIVEQLRLHLREVFVYAVPRLVTAKGYRAEDLNLPNPLLTGYLKAFQRGDAELFLRIYQPDHVLFAECPITLLTNKKIKNPLDSFFIPVVDSSRYFVIKXXXXXXHVFIAIGFRERSDAFDLKALLEDMVSYNARMELANCRTREMDERVRKGRVREDKGEGGE 229
            P VEQLRLHLREVFVYAVPRLV++ GYRAEDLNLPNPLLTGYLKAFQRGD +LFLRI+QPDH LFAECPI +L  K  K+PL SFFIPVVDSSRYFV+K      H FIAIGFRERSDAFDLKALLED+V+YNAR ELA  RT+ +D R      R D G G E
Sbjct:   40 PPVEQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDHTLFAECPIHVLPGK--KDPLGSFFIPVVDSSRYFVVKAVDRRRHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAG----RPDDGSGRE 197          
BLAST of NO22G00490 vs. NCBI_GenBank
Match: GBG27394.1 (Adaptin ear-binding coat-associated protein 1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 99.4 bits (246), Expect = 1.900e-17
Identity = 63/139 (45.32%), Postives = 84/139 (60.43%), Query Frame = 0
Query:   72 LHLREVFVYAVPRLVTAKGYRAEDLNLPNPLLTGYLKAFQRGDAELFLRIYQ-PDH-----VLFAECPITLLTN-KKIKNPLDSFFIPVVDSSRYFVIK--XXXXXXHVFIAIGFRERSDAFDLKALLEDMVSYNARME 202
            L ++EVFVY +P L  ++G+ A D NL  P LTG L+   +GD +++L+I Q P+       LFA CPI L T+  K  + LD F   VVDSSRYFVI+        H +I IGF+ER  AFDL+A L+D V   +R E
Sbjct:   21 LTIKEVFVYKIPPLQGSRGHHAADWNLDKPALTGQLRVISKGD-KVYLQILQLPESSAGLPQLFASCPIKLDTDASKPASKLDYFVQSVVDSSRYFVIRVQDEVSKRHAYIGIGFQERQSAFDLRAALDDEVRRISRGE 158          
BLAST of NO22G00490 vs. NCBI_GenBank
Match: CBN75724.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5 bits (236), Expect = 2.800e-16
Identity = 57/142 (40.14%), Postives = 84/142 (59.15%), Query Frame = 0
Query:   72 LHLREVFVYAVPRLVTAKGYRAEDLNLPNPLLTGYLKAFQRGDAELFLRIYQP--------DHVLFAECPITLLTNKKIKNPLDSFFIPVVDSSRYFVIK--XXXXXXHVFIAIGFRERSDAFDLKALLEDMVSYNARMELA 204
            L ++EVFVY VP L  + G+RAE+  L NP+ TG LK  Q G+A   LR+++P           LFA+C + L   + ++  ++S    V+DSSRYFV++        H ++ +GFRERS AFD KA+L+D V +  R + A
Sbjct:   60 LTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKIAQVGNA-CCLRLFKPPPEGELGATPELFAQCEVRLDGGRTLQVYVES----VIDSSRYFVLRCEDKASGRHAYVGVGFRERSSAFDFKAVLDDFVRFLDRQKRA 196          
BLAST of NO22G00490 vs. NCBI_GenBank
Match: XP_004992348.1 (hypothetical protein PTSG_06947 [Salpingoeca rosetta] >EGD75295.1 hypothetical protein PTSG_06947 [Salpingoeca rosetta])

HSP 1 Score: 88.6 bits (218), Expect = 3.400e-14
Identity = 51/128 (39.84%), Postives = 68/128 (53.12%), Query Frame = 0
Query:   67 VEQLRLHLREVFVYAVPRLVTAKGYRAEDLNLPNPLLTGYLKAFQRGDAELFLRIYQPDHVLFAECPITLLTNKKIKNPLDSFFIPVVDSSRYFVIKXXXXXXHVFIAIGFRERSDAFDLKALLEDMV 195
            +EQ++L LR+ FVY +P   + KGYRA D  L  P+ TG +K   +G              LFAE PI      K+         PVVDSSRYFV++      H F+ +GF+ERS+AFD    L+D V
Sbjct:    6 LEQVQLVLRQCFVYRLPPRPSTKGYRAADWGLDKPMWTGRVKVTTKGKLCTITLQDNATGKLFAEAPIRGDEVAKVVE-------PVVDSSRYFVVRVENQGRHAFLGMGFQERSEAFDFNVALQDFV 126          
BLAST of NO22G00490 vs. NCBI_GenBank
Match: CCI43866.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 87.0 bits (214), Expect = 9.900e-14
Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = 0
Query:   67 VEQLRLHLREVFVY-AVPRLVTAKGYRAEDLNLPNPLLTGYLKAFQRGDAELFLRIYQP-----DHVLFAECPITLLTNKKIKNPLDSFFIPVVDSSRYFVIK--XXXXXXHVFIAIGFRERSDAFDLKALLEDMVSYNAR 200
            +EQ+    R V+ Y  VP+ ++    RA+  ++ +P +TG ++  QRGD +  +R+Y+P     D VLFAECP+ +  +      LD +    VDSSRYF+I+         VF+ IGF ER+ AF+ KA L+D V Y  R
Sbjct:   10 IEQITFTDRSVWFYQIVPKYISTLEPRADLWDIEHPFMTGSIEVIQRGD-DCVIRLYEPLKDTTDKVLFAECPVRITPDCS----LDVYVQDCVDSSRYFMIRVEDRATKKRVFVGIGFPERTSAFNFKAALQDYVKYQRR 145          
BLAST of NO22G00490 vs. NCBI_GenBank
Match: XP_008866420.1 (hypothetical protein H310_04055 [Aphanomyces invadans] >ETW04982.1 hypothetical protein H310_04055 [Aphanomyces invadans])

HSP 1 Score: 85.5 bits (210), Expect = 2.900e-13
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = 0
Query:   68 EQLRLHLREVFVYAVPRLVTAKGYRAEDLNLPNPLLTGYLKAFQRGDAELFLRIYQPDHVLFAECPITLLTNKKIKNPLDSFFIPVVDSSRYFVIKXXXXXXH--VFIAIGFRERSDAFDLKALLEDMVSYNAR 200
            EQ   H + V++Y VP L      RA+  ++  PL+TG L+  Q  D   F+ +Y+P+  +FA+CP+ + + +    PL+ F    +DSSRYFV++      +   F+ IG  ERS AF+ KA L+D   Y  R
Sbjct:    7 EQTLFHEKNVWIYKVPLLTGDP--RADQWDVEKPLMTGSLRVVQIND-RCFVNLYEPNQTIFAQCPVEIDSTR----PLNVFVQDCIDSSRYFVLRVVDANSNRQAFVGIGLPERSAAFNFKAALQDFAKYTQR 133          
BLAST of NO22G00490 vs. NCBI_GenBank
Match: XP_003288793.1 (hypothetical protein DICPUDRAFT_48138 [Dictyostelium purpureum] >EGC34656.1 hypothetical protein DICPUDRAFT_48138 [Dictyostelium purpureum])

HSP 1 Score: 84.3 bits (207), Expect = 6.400e-13
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 0
Query:   68 EQLRLHLREVFVYAVPRLVTAKGYRAEDLNLPNPLLTGYLKAFQRGDAELFLRIYQPDH-VLFAECPITLLTNKKIKNPLDSFFI-PVVDSSRYFVIKXXXXXXHVFIAIGFRERSDAFDLKALLEDMVSY 197
            EQ  L  +E F+Y +P   +A+GY+A+D +    + +G L    RGD    +R   P+   +FA+CP+            DS  + PVVDSSRYFVIK      H F+ +GF +RSDAFD  A L+D  +Y
Sbjct:    6 EQTLLIKKECFIYRIPPRPSAQGYKAQDWDPSTYIWSGRLVIVARGDL-CVIRFEDPNSGEIFAQCPV------------DSTAVEPVVDSSRYFVIKIKDGERHAFVGMGFTDRSDAFDFSATLQDHQNY 123          
BLAST of NO22G00490 vs. NCBI_GenBank
Match: XP_009823525.1 (hypothetical protein H257_01823 [Aphanomyces astaci] >ETV86726.1 hypothetical protein H257_01823 [Aphanomyces astaci])

HSP 1 Score: 83.2 bits (204), Expect = 1.400e-12
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 0
Query:   67 VEQLRLHLREVFVYAVPRLVTAKGYRAEDLNLPNPLLTGYLKAFQRGDAELFLRIYQPDHVLFAECPITLLTNKKIKNPLDSFFIPVVDSSRYFVIK--XXXXXXHVFIAIGFRERSDAFDLKALLEDMVSYNAR 200
            +EQ   H + V++Y VP L      RA+  ++  PL+TG L+  Q  D   F+ +Y+ +  LFA+CP+ +   +    PL +F    VDSSRYFV++          F+ IG  ERS AF+ KA L+D   Y  R
Sbjct:   36 LEQTLFHEKNVWIYKVPLLTGDP--RADQWDVEKPLMTGSLRVAQIND-NCFVNLYEANQTLFAQCPVEIDATR----PLSAFVQDCVDSSRYFVLRVVDAKSGRQAFVGIGLPERSAAFNFKAALQDFAKYTQR 163          
BLAST of NO22G00490 vs. NCBI_GenBank
Match: OQR81611.1 (kinesin family member 3B [Thraustotheca clavata])

HSP 1 Score: 83.2 bits (204), Expect = 1.400e-12
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 0
Query:   67 VEQLRLHLREVFVYAVPRLVTAKGYRAEDLNLPNPLLTGYLKAFQRGDAELFLRIYQP---DHVLFAECPITLLTNKKIKNPLDSFFIPVVDSSRYFVIK--XXXXXXHVFIAIGFRERSDAFDLKALLEDMVSYNARMEL 203
            +EQ     + V++Y +P L+T +  RA+  ++  PL+TG LK  Q  D +  + +Y+P   ++VLFAECPI +      + PL  F    VDSSRYFV++          F+ IGF ERS AF+ +A LED   Y  R+ L
Sbjct:    1 MEQTLFQEKNVWIYQIP-LLTGEP-RADAWDIDKPLMTGVLKVLQTND-DCRVALYEPKETENVLFAECPIDV----DAERPLTVFMQYCVDSSRYFVLRVVEPTSKRSAFVGIGFPERSSAFNFRAALEDFARYKQRLLL 134          
BLAST of NO22G00490 vs. NCBI_GenBank
Match: XP_014210330.1 (NECAP-like protein CG9132 [Copidosoma floridanum])

HSP 1 Score: 82.8 bits (203), Expect = 1.900e-12
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 0
Query:   61 EPPLPIVEQLRLHLREVFVYAVPRLVTAKGYRAEDLNLPNPLLTGYLKAFQRGDAELFLRIYQPDHVLFAECPITLLTNKKIKNPLDSFFIPVVDSSRYFVIKXXXXXXH-VFIAIGFRERSDAFDLKALLED 193
            EP     E + L   EVFV+ +P   T +GYRA D NL  P  TG ++   +GDA       +    LFA+CPI       ++        PV DSSRYFV++         FI +GF +RSD+FDL   L+D
Sbjct:    2 EPTTETYESVLLVKSEVFVFKIPPRSTNRGYRAADWNLQEPSWTGRMRLVAQGDAVCIKLEDKASGQLFAKCPIETYPGIAVE--------PVTDSSRYFVLRIQDDNGRSAFIGVGFLDRSDSFDLNVALQD 126          
The following BLAST results are available for this feature:
BLAST of NO22G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21392.11.900e-5773.78Adaptin ear-binding coat-associated protein 1 NECA... [more]
GBG27394.11.900e-1745.32Adaptin ear-binding coat-associated protein 1 [Aur... [more]
CBN75724.12.800e-1640.14conserved unknown protein [Ectocarpus siliculosus][more]
XP_004992348.13.400e-1439.84hypothetical protein PTSG_06947 [Salpingoeca roset... [more]
CCI43866.19.900e-1437.59unnamed protein product [Albugo candida][more]
XP_008866420.12.900e-1335.82hypothetical protein H310_04055 [Aphanomyces invad... [more]
XP_003288793.16.400e-1338.93hypothetical protein DICPUDRAFT_48138 [Dictyosteli... [more]
XP_009823525.11.400e-1236.30hypothetical protein H257_01823 [Aphanomyces astac... [more]
OQR81611.11.400e-1238.30kinesin family member 3B [Thraustotheca clavata][more]
XP_014210330.11.900e-1237.59NECAP-like protein CG9132 [Copidosoma floridanum][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004231NSK004231Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00490.1NO22G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|100958gene_7046Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100215g8gene9029Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00490.1NO22G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00490 ID=NO22G00490|Name=NO22G00490|organism=Nannochloropsis oceanica|type=gene|length=1301bp
GAGAAGGGGGGGGTGAGGGGGGAGGGTGAGGAGGTCAGGAAAAAGCAATC
ATGATTATTTTTCGATGCAGACGACCCACACAAACCACAGTATGTTACTA
GTGCCAGAGCTCCTTCAAATACCTCTCACGATAATTATCGTCGCAACGTG
GCTGGCTACACGTAGGACACACAGGGCAGGCCACACAAAATCAATGCATC
GATCGCCAGCACATCAGTCCGACGATATAGTCTGCTTCTCCGCGCTTGCG
ATTCCGTCAAAAAATACATTTTCATTCCGCCCTAAGTGTGAATTCGAGAA
GATCTCAAGGACAGCTACATCTGCATCTTTCCCACCCGCCTTCTTCCTCG
GGCCTGCATTCTGACCGAGTGAAATCAAGTCCCCGCTCCATCAAGCCCCA
CCCTTCCCCAATCTCACCCTCCCTCCCTCCTCTCCGAACCCCTCAGGGCC
AAGCCATGGCAGACGGCGTCAGCACCACCCCTTCTCCTCCGGCCCCTCCT
CCTCCTCCTCGCCCTTCTCCTCCTCGTCCTTCTTCTTCTTCTACTCCTTC
TCTCCCTCTTCCTTCCTCTTCACCTCCATCTACCATCTCCAGCACAACCA
TCATCGCCCCTTCCTCTTCCCCCCCAAGCGACCCCGAACCACCCCTGCCC
ATCGTGGAACAACTACGCCTGCATCTCCGCGAAGTCTTTGTCTATGCCGT
TCCCCGCCTGGTCACCGCCAAAGGCTATCGGGCCGAGGACCTGAACCTGC
CCAACCCTCTCTTGACGGGGTACCTAAAAGCATTTCAACGAGGAGACGCC
GAGCTATTTCTCCGTATCTATCAACCGGATCACGTCCTGTTTGCAGAATG
CCCCATTACACTCCTCACCAATAAAAAAATAAAGAATCCGCTGGACAGTT
TCTTCATTCCCGTCGTGGACTCCTCCAGGTATTTCGTCATCAAAGTTGTG
GATAAAAACAGGCACGTTTTTATCGCGATTGGCTTTAGGGAAAGGAGTGA
TGCCTTTGACCTCAAGGCATTGTTGGAGGACATGGTCTCGTATAATGCGC
GAATGGAACTCGCGAACTGTCGGACAAGGGAGATGGACGAGAGAGTGAGG
AAGGGGCGGGTGAGGGAGGATAAGGGAGAAGGGGGGGAGAGGGCGGGGGA
GGGGGGAGGGGACAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGGCGAGATAAAGTCCCTACCACCATTGCTAGGGGATCT
GCGACTCAAGGAAGGGGAGAAAATCAAGCTAAATTTTATGCATGCGATTG
A
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protein sequence of NO22G00490.1

>NO22G00490.1-protein ID=NO22G00490.1-protein|Name=NO22G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MADGVSTTPSPPAPPPPPRPSPPRPSSSSTPSLPLPSSSPPSTISSTTII
APSSSPPSDPEPPLPIVEQLRLHLREVFVYAVPRLVTAKGYRAEDLNLPN
PLLTGYLKAFQRGDAELFLRIYQPDHVLFAECPITLLTNKKIKNPLDSFF
IPVVDSSRYFVIKVVDKNRHVFIAIGFRERSDAFDLKALLEDMVSYNARM
ELANCRTREMDERVRKGRVREDKGEGGERAGEGGGDRRRRRRRRRRRRRR
RRGRDKVPTTIARGSATQGRGENQAKFYACD*
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Synonyms
Publications