NO22G00490.1, NO22G00490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00490.1
Unique NameNO22G00490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1301
Alignment locationchr22:167798..169098 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:167798..169098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00490.1 vs.
Match: EWM21392.1 (Adaptin ear-binding coat-associated protein 1 NECAP-1 [Nannochloropsis gaditana])

HSP 1 Score: 245.7 bits (626), Expect = 1.700e-61
Identity = 139/207 (67.15%), Postives = 157/207 (75.85%), Query Frame = 0 
Query:   26 SSSSTPSLPLPSSSPPSTISSTTIIAPSSSPPSDPEPPLPIVEQLRLHLREVFVYAVPRLVTAKGYRAEDLNLPNPLLTGYLKAFQRGDAELFLRIYQPDHVLFAECPITLLTNKKIKNPLDSFFIPVVDSSRYFVIKVVDKNRHVFIAIGFRERSDAFDLKALLEDMVSYNARMELANCRTREMDERVRKGRVREDKGEGGERAGE 233
            SS   P+LP  ++SPPS          +SSPPS  +   P VEQLRLHLREVFVYAVPRLV++ GYRAEDLNLPNPLLTGYLKAFQRGD +LFLRI+QPDH LFAECPI +L  K  K+PL SFFIPVVDSSRYFV+K VD+ RH FIAIGFRERSDAFDLKALLED+V+YNAR ELA  RT+ +D R      R D G G E  G+
Sbjct:   10 SSPLGPTLPPNATSPPSR---------ASSPPSITDDTAPPVEQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDHTLFAECPIHVLPGK--KDPLGSFFIPVVDSSRYFVVKAVDRRRHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAG----RPDDGSGREETGD 201
The following BLAST results are available for this feature:
BLAST of NO22G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21392.11.700e-6167.15Adaptin ear-binding coat-associated protein 1 NECA... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00490NO22G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00490.1NO22G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00490.1.cds1NO22G00490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00490.1 ID=NO22G00490.1|Name=NO22G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
GAGAAGGGGGGGGTGAGGGGGGAGGGTGAGGAGGTCAGGAAAAAGCAATC
ATGATTATTTTTCGATGCAGACGACCCACACAAACCACAGTATGTTACTA
GTGCCAGAGCTCCTTCAAATACCTCTCACGATAATTATCGTCGCAACGTG
GCTGGCTACACGTAGGACACACAGGGCAGGCCACACAAAATCAATGCATC
GATCGCCAGCACATCAGTCCGACGATATAGTCTGCTTCTCCGCGCTTGCG
ATTCCGTCAAAAAATACATTTTCATTCCGCCCTAAGTGTGAATTCGAGAA
GATCTCAAGGACAGCTACATCTGCATCTTTCCCACCCGCCTTCTTCCTCG
GGCCTGCATTCTGACCGAGTGAAATCAAGTCCCCGCTCCATCAAGCCCCA
CCCTTCCCCAATCTCACCCTCCCTCCCTCCTCTCCGAACCCCTCAGGGCC
AAGCCATGGCAGACGGCGTCAGCACCACCCCTTCTCCTCCGGCCCCTCCT
CCTCCTCCTCGCCCTTCTCCTCCTCGTCCTTCTTCTTCTTCTACTCCTTC
TCTCCCTCTTCCTTCCTCTTCACCTCCATCTACCATCTCCAGCACAACCA
TCATCGCCCCTTCCTCTTCCCCCCCAAGCGACCCCGAACCACCCCTGCCC
ATCGTGGAACAACTACGCCTGCATCTCCGCGAAGTCTTTGTCTATGCCGT
TCCCCGCCTGGTCACCGCCAAAGGCTATCGGGCCGAGGACCTGAACCTGC
CCAACCCTCTCTTGACGGGGTACCTAAAAGCATTTCAACGAGGAGACGCC
GAGCTATTTCTCCGTATCTATCAACCGGATCACGTCCTGTTTGCAGAATG
CCCCATTACACTCCTCACCAATAAAAAAATAAAGAATCCGCTGGACAGTT
TCTTCATTCCCGTCGTGGACTCCTCCAGGTATTTCGTCATCAAAGTTGTG
GATAAAAACAGGCACGTTTTTATCGCGATTGGCTTTAGGGAAAGGAGTGA
TGCCTTTGACCTCAAGGCATTGTTGGAGGACATGGTCTCGTATAATGCGC
GAATGGAACTCGCGAACTGTCGGACAAGGGAGATGGACGAGAGAGTGAGG
AAGGGGCGGGTGAGGGAGGATAAGGGAGAAGGGGGGGAGAGGGCGGGGGA
GGGGGGAGGGGACAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGGCGAGATAAAGTCCCTACCACCATTGCTAGGGGATCT
GCGACTCAAGGAAGGGGAGAAAATCAAGCTAAATTTTATGCATGCGATTG
A
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protein sequence of NO22G00490.1

>NO22G00490.1-protein ID=NO22G00490.1-protein|Name=NO22G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MADGVSTTPSPPAPPPPPRPSPPRPSSSSTPSLPLPSSSPPSTISSTTII
APSSSPPSDPEPPLPIVEQLRLHLREVFVYAVPRLVTAKGYRAEDLNLPN
PLLTGYLKAFQRGDAELFLRIYQPDHVLFAECPITLLTNKKIKNPLDSFF
IPVVDSSRYFVIKVVDKNRHVFIAIGFRERSDAFDLKALLEDMVSYNARM
ELANCRTREMDERVRKGRVREDKGEGGERAGEGGGDRRRRRRRRRRRRRR
RRGRDKVPTTIARGSATQGRGENQAKFYACD*
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mRNA from alignment at chr22:167798..169098+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00490.1 ID=NO22G00490.1|Name=NO22G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at chr22:167798..169098+ (Nannochloropsis oceanica)
GAGAAGGGGGGGGTGAGGGGGGAGGGTGAGGAGGTCAGGAAAAAGCAATC
ATGATTATTTTTCGATGCAGACGACCCACACAAACCACAGTATGTTACTA
GTGCCAGAGCTCCTTCAAATACCTCTCACGATAATTATCGTCGCAACGTG
GCTGGCTACACGTAGGACACACAGGGCAGGCCACACAAAATCAATGCATC
GATCGCCAGCACATCAGTCCGACGATATAGTCTGCTTCTCCGCGCTTGCG
ATTCCGTCAAAAAATACATTTTCATTCCGCCCTAAGTGTGAATTCGAGAA
GATCTCAAGGACAGCTACATCTGCATCTTTCCCACCCGCCTTCTTCCTCG
GGCCTGCATTCTGACCGAGTGAAATCAAGTCCCCGCTCCATCAAGCCCCA
CCCTTCCCCAATCTCACCCTCCCTCCCTCCTCTCCGAACCCCTCAGGGCC
AAGCCATGGCAGACGGCGTCAGCACCACCCCTTCTCCTCCGGCCCCTCCT
CCTCCTCCTCGCCCTTCTCCTCCTCGTCCTTCTTCTTCTTCTACTCCTTC
TCTCCCTCTTCCTTCCTCTTCACCTCCATCTACCATCTCCAGCACAACCA
TCATCGCCCCTTCCTCTTCCCCCCCAAGCGACCCCGAACCACCCCTGCCC
ATCGTGGAACAACTACGCCTGCATCTCCGCGAAGTCTTTGTCTATGCCGT
TCCCCGCCTGGTCACCGCCAAAGGCTATCGGGCCGAGGACCTGAACCTGC
CCAACCCTCTCTTGACGGGGTACCTAAAAGCATTTCAACGAGGAGACGCC
GAGCTATTTCTCCGTATCTATCAACCGGATCACGTCCTGTTTGCAGAATG
CCCCATTACACTCCTCACCAATAAAAAAATAAAGAATCCGCTGGACAGTT
TCTTCATTCCCGTCGTGGACTCCTCCAGGTATTTCGTCATCAAAGTTGTG
GATAAAAACAGGCACGTTTTTATCGCGATTGGCTTTAGGGAAAGGAGTGA
TGCCTTTGACCTCAAGGCATTGTTGGAGGACATGGTCTCGTATAATGCGC
GAATGGAACTCGCGAACTGTCGGACAAGGGAGATGGACGAGAGAGTGAGG
AAGGGGCGGGTGAGGGAGGATAAGGGAGAAGGGGGGGAGAGGGCGGGGGA
GGGGGGAGGGGACAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGGCGAGATAAAGTCCCTACCACCATTGCTAGGGGATCT
GCGACTCAAGGAAGGGGAGAAAATCAAGCTAAATTTTATGCATGCGATTG
A
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Coding sequence (CDS) from alignment at chr22:167798..169098+

>NO22G00490.1 ID=NO22G00490.1|Name=NO22G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at chr22:167798..169098+ (Nannochloropsis oceanica)
ATGGCAGACGGCGTCAGCACCACCCCTTCTCCTCCGGCCCCTCCTCCTCC
TCCTCGCCCTTCTCCTCCTCGTCCTTCTTCTTCTTCTACTCCTTCTCTCC
CTCTTCCTTCCTCTTCACCTCCATCTACCATCTCCAGCACAACCATCATC
GCCCCTTCCTCTTCCCCCCCAAGCGACCCCGAACCACCCCTGCCCATCGT
GGAACAACTACGCCTGCATCTCCGCGAAGTCTTTGTCTATGCCGTTCCCC
GCCTGGTCACCGCCAAAGGCTATCGGGCCGAGGACCTGAACCTGCCCAAC
CCTCTCTTGACGGGGTACCTAAAAGCATTTCAACGAGGAGACGCCGAGCT
ATTTCTCCGTATCTATCAACCGGATCACGTCCTGTTTGCAGAATGCCCCA
TTACACTCCTCACCAATAAAAAAATAAAGAATCCGCTGGACAGTTTCTTC
ATTCCCGTCGTGGACTCCTCCAGGTATTTCGTCATCAAAGTTGTGGATAA
AAACAGGCACGTTTTTATCGCGATTGGCTTTAGGGAAAGGAGTGATGCCT
TTGACCTCAAGGCATTGTTGGAGGACATGGTCTCGTATAATGCGCGAATG
GAACTCGCGAACTGTCGGACAAGGGAGATGGACGAGAGAGTGAGGAAGGG
GCGGGTGAGGGAGGATAAGGGAGAAGGGGGGGAGAGGGCGGGGGAGGGGG
GAGGGGACAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGGGGCGAGATAAAGTCCCTACCACCATTGCTAGGGGATCTGCGAC
TCAAGGAAGGGGAGAAAATCAAGCTAAATTTTATGCATGCGATTGA
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Synonyms
Publications