NO21G02270, NO21G02270 (gene) Nannochloropsis oceanica

Overview
NameNO21G02270
Unique NameNO21G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1338
Alignment locationchr21:686717..688054 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:686717..688054 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO21G02270 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 314.7 bits (805), Expect = 3.500e-82
Identity = 177/352 (50.28%), Postives = 231/352 (65.62%), Query Frame = 0
Query:    1 MRFIASSRSLLLAATAAALCLPSALAH--ITVEDNFLDEAAREDILAQLPGQT-RFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDVFEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVYTHTLIPGDLPRRILGPMAFRDGEMQSIGDQAPRVVAQARTNSLTVRPGGIIRVGLSFVVLDVDGNAASASVKRAVRKLENKDLVIGCGLMD-QNRRMLGGRNKTTNANDD-----ITFVNSKLKPNFYKPKLTFN--NTLDAVYWTLPSETTKILHPYKITWAFRVGKGVPSGTVVPIGVVIEDDNTPEFLVELRVLVK 342
            M    SSR LL  AT A LCL S+ +H  I VEDNF+DE  RE +LAQLP +  RFKHT+DVPG +Y+RL+S+++P N+++  ++ + PAKG+   V AHKD FED++LAD QVGLVYLEGDGRM  +++VTGEET++DV+PGR +SWDN  YTH L+ G +PRRILGPMAFRDG  QSIGD   R + QAR + L  R G  +RV    VVLD          KRAVR LE  D+V  C L    N + L   NKT+    D     I+F  SK+ PN ++PK+T+   +  D + WTLPS+ T++L  YKIT   R+GK VPSGTV+P+ + +      E+  EL V+VK
Sbjct:    1 MPLFVSSRYLLSIAT-AVLCLTSSFSHAKIVVEDNFIDETTREALLAQLPSEMHRFKHTVDVPGNVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGDDPNRFIIQARAHHLFARAGKTVRVTADLVVLD----DQPIGRKRAVRALETDDIVFACSLDPFFNFQSLTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPLYLSVPF----EWEQELGVVVK 343          
BLAST of NO21G02270 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 302.0 bits (772), Expect = 2.400e-78
Identity = 172/353 (48.73%), Postives = 230/353 (65.16%), Query Frame = 0
Query:    1 MRFIASSRSLLLAATAAALCLPS--ALAHITVEDNFLDEAAREDILAQLPGQT-RFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDVFEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVYTHTLIPGDLPRRILGPMAFRDGEMQSI-GDQAPRVVAQARTNSLTVRPGGIIRVGLSFVVLDVDGNAASASVKRAVRKLENKDLVIGCGLMD-QNRRMLGGRNKTTNANDD-----ITFVNSKLKPNFYKPKLTFN--NTLDAVYWTLPSETTKILHPYKITWAFRVGKGVPSGTVVPIGVVIEDDNTPEFLVELRVLVK 342
            M    SSR LL  AT AALCL S  + A I VEDNF+DE  R+ +LAQLP +  RFKHT+D+PG++Y+RL+S+++P N+++  ++ + PAKG+   V AHKD FED++LAD QVGLVYLEGDGRM  +++VTGEET++DV+PGR +SWDN  YTH L+ G +PRRILGPMAFRDG  QSI G    R + QAR + L  R G  +RV    VVLD          +RAVR L   D+V  C L    N + L   NKT+    D     I+F  SK+ PN ++PK+T+   +  D + WTLPS+ T++L  YKIT   R+GK VPSGT++P+ + +      E+  EL V+VK
Sbjct:    1 MPLFVSSRYLLSIAT-AALCLTSSFSFAKIVVEDNFIDETTRDALLAQLPSEMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGGGDRNRFIIQARAHPLFARAGKTVRVTADLVVLD-----DQPGRERAVRALPTADIVFACSLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPS----EWEQELGVVVK 343          
BLAST of NO21G02270 vs. NCBI_GenBank
Match: EWM30157.1 (hypothetical protein Naga_100115g3 [Nannochloropsis gaditana])

HSP 1 Score: 70.5 bits (171), Expect = 1.200e-8
Identity = 48/143 (33.57%), Postives = 71/143 (49.65%), Query Frame = 0
Query:  183 RVVAQARTNSLTVRPGGIIRVGLSFVVLDVDGNAASASVKRAVRKLENKDLVIGCGLMDQNRRMLGGRNKTTNANDDITFVNSKLKPNFYKPKLTFNNT-LDAVYWTLPSETTKILHPYKITWAFRVGKGVPSGTVVPIGVVI 325
            +V+AQA    L VRPGG I   L+FVV     NA   ++      L  ++L     L ++NR   G  +    AN ++    S++ PN ++PKL  N +   +V W +P E T +   YK+    RVGKGV   TV  + V +
Sbjct:   28 QVIAQAMVKPLAVRPGGRITATLNFVVSSFASNATDPAIAVGFATLGAQEL---AALNNKNRTTKGKASMDPLAN-ELVIRGSRISPNKWRPKLRTNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRKVSVTL 166          
The following BLAST results are available for this feature:
BLAST of NO21G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22739.13.500e-8250.28hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
EWM22729.12.400e-7848.73hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
EWM30157.11.200e-833.57hypothetical protein Naga_100115g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL027nonsL027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR090ncniR090Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02270.1NO21G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02270.1NO21G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02270 ID=NO21G02270|Name=NO21G02270|organism=Nannochloropsis oceanica|type=gene|length=1338bp
ATGCGATTCATTGCCTCCTCCCGGTCCCTGCTGCTGGCCGCCACCGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGACATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCGAGCAACACCGATCTCTCTCATACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACGCATACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGAGATGCAGTCTATTGGGGATCAAGCCCCTCGCG
TCGTTGCTCAAGCGAGAACCAACTCCTTGACTGTGCGTCCGGGAGGAATA
ATCAGGGTGGGCCTTTCCTTCGTGGTCCTTGATGTGGATGGAAATGCCGC
GAGCGCTAGCGTAAAGCGCGCGGTGCGGAAGTTGGAGAACAAGGACCTGG
TGATCGGGgtaaggacggagaggagagaggagaggggggagaacggcgga
acggaaagatatatatatactgtgtttcttgctctgcgtatcgtgtatct
tgctattgacctgtttctctgtccctctctcctctctcgtttctcccacc
ctccacatctctctccagTGCGGACTGATGGATCAGAACAGGCGAATGCT
CGGGGGGCGCAACAAGACAACGAATGCGAACGATGATATCACATTCGTAA
ACTCCAAGCTGAAGCCCAATTTCTACAAGCCGAAgtacgtatctttgccc
cgcttcctccctgtctgacggatgtgggaacgagatatggcgagcgtgtc
ttttgggagaagaaagccaacttttcagtgccagagctcatcgtccctct
cttcgtattctccctcgctctcttgctccctgccagGTTGACCTTCAATA
ATACACTCGATGCTGTGTATTGGACCCTCCCGAGCGAGACGACGAAAATC
CTGCACCCGTACAAGATCACCTGGGCTTTCCGTGTGGGGAAGGGCGTGCC
GTCCGGTACGGTTGTCCCGATCGGTGTCGTTATTGAGGATGATAACACCC
CAGAGTTCCTGGTCGAGCTGCGGGTGCTGGTGAAGTAA
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protein sequence of NO21G02270.1

>NO21G02270.1-protein ID=NO21G02270.1-protein|Name=NO21G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MRFIASSRSLLLAATAAALCLPSALAHITVEDNFLDEAAREDILAQLPGQ
TRFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDV
FEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVY
THTLIPGDLPRRILGPMAFRDGEMQSIGDQAPRVVAQARTNSLTVRPGGI
IRVGLSFVVLDVDGNAASASVKRAVRKLENKDLVIGCGLMDQNRRMLGGR
NKTTNANDDITFVNSKLKPNFYKPKLTFNNTLDAVYWTLPSETTKILHPY
KITWAFRVGKGVPSGTVVPIGVVIEDDNTPEFLVELRVLVK*
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Synonyms
Publications