NO21G02270.1, NO21G02270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02270.1
Unique NameNO21G02270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1026
Alignment locationchr21:686717..688054 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:686717..688054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02270.1 vs.
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 314.7 bits (805), Expect = 3.500e-82
Identity = 177/352 (50.28%), Postives = 231/352 (65.62%), Query Frame = 0 
Query:    1 MRFIASSRSLLLAATAAALCLPSALAH--ITVEDNFLDEAAREDILAQLPGQT-RFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDVFEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVYTHTLIPGDLPRRILGPMAFRDGEMQSIGDQAPRVVAQARTNSLTVRPGGIIRVGLSFVVLDVDGNAASASVKRAVRKLENKDLVIGCGLMD-QNRRMLGGRNKTTNANDD-----ITFVNSKLKPNFYKPKLTFN--NTLDAVYWTLPSETTKILHPYKITWAFRVGKGVPSGTVVPIGVVIEDDNTPEFLVELRVLVK 342
            M    SSR LL  ATA  LCL S+ +H  I VEDNF+DE  RE +LAQLP +  RFKHT+DVPG +Y+RL+S+++P N+++  ++ + PAKG+   V AHKD FED++LAD QVGLVYLEGDGRM  +++VTGEET++DV+PGR +SWDN  YTH L+ G +PRRILGPMAFRDG  QSIGD   R + QAR + L  R G  +RV    VVLD          KRAVR LE  D+V  C L    N + L   NKT+    D     I+F  SK+ PN ++PK+T+   +  D + WTLPS+ T++L  YKIT   R+GK VPSGTV+P+ + +      E+  EL V+VK
Sbjct:    1 MPLFVSSRYLLSIATAV-LCLTSSFSHAKIVVEDNFIDETTREALLAQLPSEMHRFKHTVDVPGNVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGDDPNRFIIQARAHHLFARAGKTVRVTADLVVLD----DQPIGRKRAVRALETDDIVFACSLDPFFNFQSLTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPLYLSVPF----EWEQELGVVVK 343
The following BLAST results are available for this feature:
BLAST of NO21G02270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22739.13.500e-8250.28hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02270NO21G02270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02270.1NO21G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02270.1.cds1NO21G02270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02270.1.cds2NO21G02270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02270.1.cds3NO21G02270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02270.1 ID=NO21G02270.1|Name=NO21G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
ATGCGATTCATTGCCTCCTCCCGGTCCCTGCTGCTGGCCGCCACCGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGACATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCGAGCAACACCGATCTCTCTCATACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACGCATACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGAGATGCAGTCTATTGGGGATCAAGCCCCTCGCG
TCGTTGCTCAAGCGAGAACCAACTCCTTGACTGTGCGTCCGGGAGGAATA
ATCAGGGTGGGCCTTTCCTTCGTGGTCCTTGATGTGGATGGAAATGCCGC
GAGCGCTAGCGTAAAGCGCGCGGTGCGGAAGTTGGAGAACAAGGACCTGG
TGATCGGGTGCGGACTGATGGATCAGAACAGGCGAATGCTCGGGGGGCGC
AACAAGACAACGAATGCGAACGATGATATCACATTCGTAAACTCCAAGCT
GAAGCCCAATTTCTACAAGCCGAAGTTGACCTTCAATAATACACTCGATG
CTGTGTATTGGACCCTCCCGAGCGAGACGACGAAAATCCTGCACCCGTAC
AAGATCACCTGGGCTTTCCGTGTGGGGAAGGGCGTGCCGTCCGGTACGGT
TGTCCCGATCGGTGTCGTTATTGAGGATGATAACACCCCAGAGTTCCTGG
TCGAGCTGCGGGTGCTGGTGAAGTAA
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protein sequence of NO21G02270.1

>NO21G02270.1-protein ID=NO21G02270.1-protein|Name=NO21G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MRFIASSRSLLLAATAAALCLPSALAHITVEDNFLDEAAREDILAQLPGQ
TRFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDV
FEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVY
THTLIPGDLPRRILGPMAFRDGEMQSIGDQAPRVVAQARTNSLTVRPGGI
IRVGLSFVVLDVDGNAASASVKRAVRKLENKDLVIGCGLMDQNRRMLGGR
NKTTNANDDITFVNSKLKPNFYKPKLTFNNTLDAVYWTLPSETTKILHPY
KITWAFRVGKGVPSGTVVPIGVVIEDDNTPEFLVELRVLVK*
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mRNA from alignment at chr21:686717..688054-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02270.1 ID=NO21G02270.1|Name=NO21G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp|location=Sequence derived from alignment at chr21:686717..688054- (Nannochloropsis oceanica)
ATGCGATTCATTGCCTCCTCCCGGTCCCTGCTGCTGGCCGCCACCGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGACATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCGAGCAACACCGATCTCTCTCATACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACGCATACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGAGATGCAGTCTATTGGGGATCAAGCCCCTCGCG
TCGTTGCTCAAGCGAGAACCAACTCCTTGACTGTGCGTCCGGGAGGAATA
ATCAGGGTGGGCCTTTCCTTCGTGGTCCTTGATGTGGATGGAAATGCCGC
GAGCGCTAGCGTAAAGCGCGCGGTGCGGAAGTTGGAGAACAAGGACCTGG
TGATCGGGGTAAGGACGGAGAGGAGAGAGGAGAGGGGGGAGAACGGCGGA
ACGGAAAGATATATATATACTGTGTTTCTTGCTCTGCGTATCGTGTATCT
TGCTATTGACCTGTTTCTCTGTCCCTCTCTCCTCTCTCGTTTCTCCCACC
CTCCACATCTCTCTCCAGTGCGGACTGATGGATCAGAACAGGCGAATGCT
CGGGGGGCGCAACAAGACAACGAATGCGAACGATGATATCACATTCGTAA
ACTCCAAGCTGAAGCCCAATTTCTACAAGCCGAAGTACGTATCTTTGCCC
CGCTTCCTCCCTGTCTGACGGATGTGGGAACGAGATATGGCGAGCGTGTC
TTTTGGGAGAAGAAAGCCAACTTTTCAGTGCCAGAGCTCATCGTCCCTCT
CTTCGTATTCTCCCTCGCTCTCTTGCTCCCTGCCAGGTTGACCTTCAATA
ATACACTCGATGCTGTGTATTGGACCCTCCCGAGCGAGACGACGAAAATC
CTGCACCCGTACAAGATCACCTGGGCTTTCCGTGTGGGGAAGGGCGTGCC
GTCCGGTACGGTTGTCCCGATCGGTGTCGTTATTGAGGATGATAACACCC
CAGAGTTCCTGGTCGAGCTGCGGGTGCTGGTGAAGTAA
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Coding sequence (CDS) from alignment at chr21:686717..688054-

>NO21G02270.1 ID=NO21G02270.1|Name=NO21G02270.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr21:686717..688054- (Nannochloropsis oceanica)
ATGCGATTCATTGCCTCCTCCCGGTCCCTGCTGCTGGCCGCCACCGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGACATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCGAGCAACACCGATCTCTCTCATACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACGCATACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGAGATGCAGTCTATTGGGGATCAAGCCCCTCGCG
TCGTTGCTCAAGCGAGAACCAACTCCTTGACTGTGCGTCCGGGAGGAATA
ATCAGGGTGGGCCTTTCCTTCGTGGTCCTTGATGTGGATGGAAATGCCGC
GAGCGCTAGCGTAAAGCGCGCGGTGCGGAAGTTGGAGAACAAGGACCTGG
TGATCGGGTGCGGACTGATGGATCAGAACAGGCGAATGCTCGGGGGGCGC
AACAAGACAACGAATGCGAACGATGATATCACATTCGTAAACTCCAAGCT
GAAGCCCAATTTCTACAAGCCGAAGTTGACCTTCAATAATACACTCGATG
CTGTGTATTGGACCCTCCCGAGCGAGACGACGAAAATCCTGCACCCGTAC
AAGATCACCTGGGCTTTCCGTGTGGGGAAGGGCGTGCCGTCCGGTACGGT
TGTCCCGATCGGTGTCGTTATTGAGGATGATAACACCCCAGAGTTCCTGG
TCGAGCTGCGGGTGCTGGTGAAGTAA
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Synonyms
Publications