NO21G01770, NO21G01770 (gene) Nannochloropsis oceanica

Overview
NameNO21G01770
Unique NameNO21G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1221
Alignment locationchr21:526698..527918 -

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Properties
Property NameValue
DescriptionBinding domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:526698..527918 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0048037cofactor binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR003781CoA-bd
Homology
BLAST of NO21G01770 vs. NCBI_GenBank
Match: EWM22681.1 (binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 203.0 bits (515), Expect = 6.100e-49
Identity = 99/138 (71.74%), Postives = 113/138 (81.88%), Query Frame = 0
Query:    1 MSAGKFSPFLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREKEIEGLPCLANLSFLTCPSETAVSVITPPAVTVSVLEQAAKLGIKHVWLQPGCESPEAIATAERVGLLPTLIFGGPCVLVELGFEGRDH 139
            MSA K   FLSA++FAVVGAST REKFGNKVLRCY+Q GK   PINP+E+ IEG+  LANLS L  P+ TAVSV+TPP VTV +LE+AA+LGIKH+WLQPGCESPE +A A R GLLPTLI GGPCVLVELGF+  DH
Sbjct:    1 MSAAKIPAFLSASSFAVVGASTNREKFGNKVLRCYIQHGKSITPINPKERMIEGIAALANLSSLPNPTNTAVSVVTPPIVTVDILEEAARLGIKHIWLQPGCESPEVMAAAARFGLLPTLISGGPCVLVELGFD--DH 136          
BLAST of NO21G01770 vs. NCBI_GenBank
Match: CBJ30528.1 (CoA-binding domain protein [Ectocarpus siliculosus])

HSP 1 Score: 153.3 bits (386), Expect = 5.500e-34
Identity = 74/125 (59.20%), Postives = 95/125 (76.00%), Query Frame = 0
Query:    9 FLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREKEIEGLPCLANLSFLTCPSETAVSVITPPAVTVSVLEQAAKLGIKHVWLQPGCESPEAIATAERVGLLPTLIFGGPCVLVELGF 134
            FL+A  FAVVGAST R KFGNKVLRCYL   K  +P+NPRE+EIEG  C+ +LS L  P + +VSV+TPPAVT++V+E+A +LG+K +WLQPG E  E ++ AE +GL   +I G PCVLVELG+
Sbjct:    8 FLAADRFAVVGASTNRSKFGNKVLRCYLWREKTVVPVNPREEEIEGKKCVKSLSDLPDPQDVSVSVVTPPAVTLAVVEEAGRLGVKRLWLQPGSEDDEVLSKAEELGL--QIIHGEPCVLVELGY 130          
BLAST of NO21G01770 vs. NCBI_GenBank
Match: WP_040098147.1 (CoA-binding protein [Geoalkalibacter ferrihydriticus] >KIH76974.1 CoA-binding protein [Geoalkalibacter ferrihydriticus DSM 17813] >SDL41513.1 Predicted CoA-binding protein [Geoalkalibacter ferrihydriticus])

HSP 1 Score: 142.9 bits (359), Expect = 7.500e-31
Identity = 71/132 (53.79%), Postives = 95/132 (71.97%), Query Frame = 0
Query:    5 KFSPFLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREKEIEGLPCLANLSFLTCPSET-AVSVITPPAVTVSVLEQAAKLGIKHVWLQPGCESPEAIATAERVGLLPTLIFGGPCVLVELGFEG 136
            K   FL+A  F VVGAS++  K+GNKVLRCYLQ+G+  IP+NP EK+IEG+ C+AN+S L  P E  ++SVITPP VT  V++ A   G++++W+QPG ESP A+A AE+ GL   +I  G C+LV LGF G
Sbjct:    7 KIDQFLAADVFGVVGASSKTYKYGNKVLRCYLQNGRNVIPVNPVEKQIEGIDCVANVSEL--PDEVKSISVITPPQVTDKVVDAAIARGVENIWMQPGAESPPAVAKAEKAGL--NVIADGSCILVVLGFSG 134          
BLAST of NO21G01770 vs. NCBI_GenBank
Match: WP_027715288.1 (CoA-binding protein [Desulfuromonas sp. TF])

HSP 1 Score: 139.0 bits (349), Expect = 1.100e-29
Identity = 68/134 (50.75%), Postives = 95/134 (70.90%), Query Frame = 0
Query:    5 KFSPFLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREKEIEGLPCLANLSFLTCPSETAVSVITPPAVTVSVLEQAAKLGIKHVWLQPGCESPEAIATAERVGLLPTLIFGGPCVLVELGFEGRDH 139
            +   FLS+  F V GAST REK+GNKVLRCYL +GKKAIPINPR  +IEG+PC+A ++ L  P   ++SVITPP +T +V+++A   G+++VW+QPG ESP A+    + G+   +I  G C+LV LG+  R+H
Sbjct:    4 RIEKFLSSQAFGVAGASTNREKYGNKVLRCYLANGKKAIPINPRADKIEGVPCVAGVADLP-PDVKSLSVITPPKITETVVDEAIGKGVENVWMQPGAESPAAVEKCRKAGI--NVIADGSCLLVVLGY--REH 132          
BLAST of NO21G01770 vs. NCBI_GenBank
Match: PIE24721.1 (CoA-binding protein [Planctomycetes bacterium])

HSP 1 Score: 138.3 bits (347), Expect = 1.800e-29
Identity = 74/125 (59.20%), Postives = 87/125 (69.60%), Query Frame = 0
Query:    9 FLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREKEIEGLPCLANLSFLTCPSETAVSVITPPAVTVSVLEQAAKLGIKHVWLQPGCESPEAIATAERVGLLPTLIFGGPCVLVELGF 134
            F     FAVVGAST+REK+GNKVLRCYLQ   +A PINP   E+EGLP   +L+  T     A+SVITPP +T  +LEQA + GI  VWLQPG ESP+AIA AE  G+   LI GGPC+LV LGF
Sbjct:    8 FFEHGPFAVVGASTKREKYGNKVLRCYLQHDLQAYPINPHADEVEGLPAYPDLN-STPQKPGAISVITPPEITEKLLEQAHEFGIDWVWLQPGAESPKAIAKAEGYGM--KLIAGGPCLLVALGF 129          
BLAST of NO21G01770 vs. NCBI_GenBank
Match: WP_026852644.1 (CoA-binding protein [Geothrix fermentans])

HSP 1 Score: 137.5 bits (345), Expect = 3.100e-29
Identity = 69/129 (53.49%), Postives = 90/129 (69.77%), Query Frame = 0
Query:    5 KFSPFLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREKEIEGLPCLANLSFLTCPSETAVSVITPPAVTVSVLEQAAKLGIKHVWLQPGCESPEAIATAERVGLLPTLIFGGPCVLVELGF 134
            +   FL++  FAVVGAST R+K+GNKVLRCY Q G +  PINP+  E+EGL    +L+ L      A+SVITPPA T  V+ +AA  G+KHVW+QPG ES EAI TAE +G+   +I GGPC+LV +G+
Sbjct:    6 RIQSFLASGPFAVVGASTDRDKYGNKVLRCYQQHGHEVYPINPKAPEVEGLKAYPSLAALPV-KVPAISVITPPAATEQVVREAAAAGVKHVWMQPGAESDEAIRTAESLGM--NVIAGGPCLLVVMGY 131          
BLAST of NO21G01770 vs. NCBI_GenBank
Match: OGU13962.1 (CoA-binding protein [Geobacteraceae bacterium GWC2_53_11])

HSP 1 Score: 137.5 bits (345), Expect = 3.100e-29
Identity = 67/126 (53.17%), Postives = 92/126 (73.02%), Query Frame = 0
Query:    9 FLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREKEIEGLPCLANLSFLTCPSET-AVSVITPPAVTVSVLEQAAKLGIKHVWLQPGCESPEAIATAERVGLLPTLIFGGPCVLVELGF 134
            FL++  F VVGAST R+K+GNKVLRCYLQ+G+KAIP+NP E EIEG+ C+A +S L  PSE  ++S++TPPAVT+ ++  A   GIK++W+QPG E P+A+A     G+   +I  G C LV LG+
Sbjct:   10 FLASPAFGVVGASTNRQKYGNKVLRCYLQNGRKAIPVNPNEPEIEGVACVATISDL--PSEVESISMVTPPAVTLQLVPLAVAKGIKNIWMQPGAEHPDAVALCREQGI--NVIADGSCALVVLGY 131          
BLAST of NO21G01770 vs. NCBI_GenBank
Match: WP_094092082.1 (CoA-binding protein [Legionella clemsonensis] >ASQ47333.1 CoA binding domain protein [Legionella clemsonensis])

HSP 1 Score: 137.5 bits (345), Expect = 3.100e-29
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 0
Query:    5 KFSPFLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREKEIEGLPCLANLSFLTCPSETAVSVITPPAVTVSVLEQAAKLGIKHVWLQPGCESPEAIATAERVGLLPTLIFGGPCVLVELGF 134
            + + FLS+  + VVGAS+RR KFGNKVLRCYLQ+GK A P+NP E  IEG+  +AN+S L    E ++S+ITP AVT  ++E+A + GIK++W+QPG ES +AI   ++  +   +I GGPC+LVELGF
Sbjct:    6 QINQFLSSNAYGVVGASSRRHKFGNKVLRCYLQNGKTAYPVNPGESMIEGIASVANVSDLPASVE-SISIITPAAVTEKIVEEAIRKGIKNIWMQPGAESEKAIERCKKSQV--NVIAGGPCLLVELGF 131          
BLAST of NO21G01770 vs. NCBI_GenBank
Match: WP_053552079.1 (CoA-binding protein [Desulfuromonas soudanensis] >ALC18133.1 putative CoA-binding protein [Desulfuromonas soudanensis])

HSP 1 Score: 137.1 bits (344), Expect = 4.100e-29
Identity = 67/135 (49.63%), Postives = 97/135 (71.85%), Query Frame = 0
Query:    5 KFSPFLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREKEIEGLPCLANLSFLTCPSET-AVSVITPPAVTVSVLEQAAKLGIKHVWLQPGCESPEAIATAERVGLLPTLIFGGPCVLVELGFEGRDH 139
            + + FLS+  F V GAST R+K+GNK+LRCYLQ GKKA+PINPR ++IEG+ C+ +++ L  P +  ++SVITPP +T +V+E A   GI ++W+QPG ESP A+A  ++ G+   +I  G C+LV LG+  RDH
Sbjct:    4 RIAKFLSSPAFGVAGASTNRDKYGNKILRCYLQHGKKAVPINPRAEKIEGIDCVPSVAEL--PDDVRSLSVITPPKITEAVVEAAIARGIDNIWMQPGAESPAAVAACQKAGV--NVIADGSCLLVVLGY--RDH 132          
BLAST of NO21G01770 vs. NCBI_GenBank
Match: WP_082820156.1 (hypothetical protein [Desulfuromonas sp. DDH964] >AMV71060.1 Rossmann fold nucleotide-binding protein [Desulfuromonas sp. DDH964])

HSP 1 Score: 137.1 bits (344), Expect = 4.100e-29
Identity = 68/134 (50.75%), Postives = 96/134 (71.64%), Query Frame = 0
Query:    5 KFSPFLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREKEIEGLPCLANLSFLTCPSETAVSVITPPAVTVSVLEQAAKLGIKHVWLQPGCESPEAIATAERVGLLPTLIFGGPCVLVELGFEGRDH 139
            + + FL+A+ F VVGAS+ R+K+GNKV+RCY Q  +  IP+NPRE+ IEG+PC+A +S L  P  T++S+ITPP+VT  V++ A   GI+++W+QPG ES  AIAT E  G+   LI  G C+LV LG+  R+H
Sbjct:  337 RIATFLAASAFGVVGASSNRDKYGNKVVRCYQQRNRTVIPVNPREEVIEGIPCVARVSDLP-PEATSISIITPPSVTEQVVKVAIAHGIRNIWMQPGAESAAAIATCEAEGV--NLIADGSCLLVVLGY--REH 465          
The following BLAST results are available for this feature:
BLAST of NO21G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22681.16.100e-4971.74binding domain protein [Nannochloropsis gaditana][more]
CBJ30528.15.500e-3459.20CoA-binding domain protein [Ectocarpus siliculosus... [more]
WP_040098147.17.500e-3153.79CoA-binding protein [Geoalkalibacter ferrihydritic... [more]
WP_027715288.11.100e-2950.75CoA-binding protein [Desulfuromonas sp. TF][more]
PIE24721.11.800e-2959.20CoA-binding protein [Planctomycetes bacterium][more]
WP_026852644.13.100e-2953.49CoA-binding protein [Geothrix fermentans][more]
OGU13962.13.100e-2953.17CoA-binding protein [Geobacteraceae bacterium GWC2... [more]
WP_094092082.13.100e-2952.71CoA-binding protein [Legionella clemsonensis] >ASQ... [more]
WP_053552079.14.100e-2949.63CoA-binding protein [Desulfuromonas soudanensis] >... [more]
WP_082820156.14.100e-2950.75hypothetical protein [Desulfuromonas sp. DDH964] >... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004602NSK004602Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01770.1NO21G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602614gene_8141Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100218g12gene7761Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01770.1NO21G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01770 ID=NO21G01770|Name=NO21G01770|organism=Nannochloropsis oceanica|type=gene|length=1221bp
AGCCGCACCCACAAGGACACCATACTCTTCTGCCTATATTGTGTCGACTT
TCGCAGTCGCTAGCTCCTGGAAAAGTGCAGGGTCCTGTGCTAGGAAGGCT
CGTCCTGATCATCGCCACACTTAACTTCAGCCAACTCGCGGCCGCCTTTT
GCCCAGTTTCCTACCTCGTCCAGgtacgcggagagtagcaaggatactct
aatttaagctctgtacgagcgtagggacgcgcgtatccgatgattgacgt
gtatatccaaggcttgcctcggattcgccttccctttctctcattttccc
cctgcatctcctagccatcatggccaccccacaaccctgggaaatagtct
agcagcatatcattttcataaaaactacctttctactgtccgtgtgagcc
ttctcaccacccttctcatacccgacataacagGCCAACCACAACCGCGC
CCGCGGCACGCCAACCGCCATGTCTGCCGGCAAATTTTCTCCCTTCCTGT
CCGCCACCACCTTTGCTGTCGTCGGGGCTAGCACCCGCCGCGAGAAATTC
GGAAATAAGGTGCTCAGATGCTATCTCCAAGACGGCAAGAAGGCTATTCC
CATCAATCCGAGAGAAAAAGAGATCGAGGGCCTTCCTTGCCTTGCCAACC
TTTCCTTTCTGACCTGCCCATCTGAGACGGCAGTTTCTGTCATTACTCCT
CCTGCGGTCACTGTGAGCGTGCTCGAACAGGCTGCCAAGCTGGGAATAAA
GCATGTGTGGCTGCAACCGGGCTGTGAGAGTCCCGAGGCGATTGCCACGG
CGGAGAGAGTTGGCTTGCTTCCCACTTTGATCTTTGGTGGCCCATGCGTC
TTGGTGGAACTCGGCTTTGAGGGGAGGGATCATTGATTGGGGTTAAGAAC
TGACAACAAGAACGGGAATGAAGGTATGGGAACGCCATGAGATTGTTAAG
TTTTACGAATGCGAGGGGAATTGGCCAGGTTGCAGAGGTGTTTGCTAGGG
TGTGCAGTGGCGGGCTTGAGGGTTTGGGTACGGGGACGGGGAGGTCTGAA
GCCATGGACCAGAAGATGTCTAGAAGAGCAGAGCAAATGAGAAAAGTCGT
CTCTTAAAGCCTTCGTAATCAGCTATGTCTGTGCTTCGTGTACAGGAAAT
TTGTGCCGCATGTGAACGAAGGAATCCATGCCAAAAGCGCAACGGACTTA
TCTATCCATCTATCTATCTAT
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protein sequence of NO21G01770.1

>NO21G01770.1-protein ID=NO21G01770.1-protein|Name=NO21G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSAGKFSPFLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREK
EIEGLPCLANLSFLTCPSETAVSVITPPAVTVSVLEQAAKLGIKHVWLQP
GCESPEAIATAERVGLLPTLIFGGPCVLVELGFEGRDH*
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Synonyms
Publications