NO21G01770.1, NO21G01770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01770.1
Unique NameNO21G01770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length961
Alignment locationchr21:526698..527918 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:526698..527918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01770.1 vs.
Match: EWM22681.1 (binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 203.0 bits (515), Expect = 6.100e-49
Identity = 99/138 (71.74%), Postives = 113/138 (81.88%), Query Frame = 0 
Query:    1 MSAGKFSPFLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREKEIEGLPCLANLSFLTCPSETAVSVITPPAVTVSVLEQAAKLGIKHVWLQPGCESPEAIATAERVGLLPTLIFGGPCVLVELGFEGRDH 139
            MSA K   FLSA++FAVVGAST REKFGNKVLRCY+Q GK   PINP+E+ IEG+  LANLS L  P+ TAVSV+TPP VTV +LE+AA+LGIKH+WLQPGCESPE +A A R GLLPTLI GGPCVLVELGF+  DH
Sbjct:    1 MSAAKIPAFLSASSFAVVGASTNREKFGNKVLRCYIQHGKSITPINPKERMIEGIAALANLSSLPNPTNTAVSVVTPPIVTVDILEEAARLGIKHIWLQPGCESPEVMAAAARFGLLPTLISGGPCVLVELGFD--DH 136
The following BLAST results are available for this feature:
BLAST of NO21G01770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900SequenceEWM22681.1
Match NameE-valueIdentityDescription
EWM22681.16.100e-4971.74binding domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01770NO21G01770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01770.1NO21G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01770.1.cds1NO21G01770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01770.1 ID=NO21G01770.1|Name=NO21G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=961bp
AGCCGCACCCACAAGGACACCATACTCTTCTGCCTATATTGTGTCGACTT
TCGCAGTCGCTAGCTCCTGGAAAAGTGCAGGGTCCTGTGCTAGGAAGGCT
CGTCCTGATCATCGCCACACTTAACTTCAGCCAACTCGCGGCCGCCTTTT
GCCCAGTTTCCTACCTCGTCCAGGCCAACCACAACCGCGCCCGCGGCACG
CCAACCGCCATGTCTGCCGGCAAATTTTCTCCCTTCCTGTCCGCCACCAC
CTTTGCTGTCGTCGGGGCTAGCACCCGCCGCGAGAAATTCGGAAATAAGG
TGCTCAGATGCTATCTCCAAGACGGCAAGAAGGCTATTCCCATCAATCCG
AGAGAAAAAGAGATCGAGGGCCTTCCTTGCCTTGCCAACCTTTCCTTTCT
GACCTGCCCATCTGAGACGGCAGTTTCTGTCATTACTCCTCCTGCGGTCA
CTGTGAGCGTGCTCGAACAGGCTGCCAAGCTGGGAATAAAGCATGTGTGG
CTGCAACCGGGCTGTGAGAGTCCCGAGGCGATTGCCACGGCGGAGAGAGT
TGGCTTGCTTCCCACTTTGATCTTTGGTGGCCCATGCGTCTTGGTGGAAC
TCGGCTTTGAGGGGAGGGATCATTGATTGGGGTTAAGAACTGACAACAAG
AACGGGAATGAAGGTATGGGAACGCCATGAGATTGTTAAGTTTTACGAAT
GCGAGGGGAATTGGCCAGGTTGCAGAGGTGTTTGCTAGGGTGTGCAGTGG
CGGGCTTGAGGGTTTGGGTACGGGGACGGGGAGGTCTGAAGCCATGGACC
AGAAGATGTCTAGAAGAGCAGAGCAAATGAGAAAAGTCGTCTCTTAAAGC
CTTCGTAATCAGCTATGTCTGTGCTTCGTGTACAGGAAATTTGTGCCGCA
TGTGAACGAAGGAATCCATGCCAAAAGCGCAACGGACTTATCTATCCATC
TATCTATCTAT
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protein sequence of NO21G01770.1

>NO21G01770.1-protein ID=NO21G01770.1-protein|Name=NO21G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSAGKFSPFLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREK
EIEGLPCLANLSFLTCPSETAVSVITPPAVTVSVLEQAAKLGIKHVWLQP
GCESPEAIATAERVGLLPTLIFGGPCVLVELGFEGRDH*
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mRNA from alignment at chr21:526698..527918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01770.1 ID=NO21G01770.1|Name=NO21G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp|location=Sequence derived from alignment at chr21:526698..527918- (Nannochloropsis oceanica)
AGCCGCACCCACAAGGACACCATACTCTTCTGCCTATATTGTGTCGACTT
TCGCAGTCGCTAGCTCCTGGAAAAGTGCAGGGTCCTGTGCTAGGAAGGCT
CGTCCTGATCATCGCCACACTTAACTTCAGCCAACTCGCGGCCGCCTTTT
GCCCAGTTTCCTACCTCGTCCAGGTACGCGGAGAGTAGCAAGGATACTCT
AATTTAAGCTCTGTACGAGCGTAGGGACGCGCGTATCCGATGATTGACGT
GTATATCCAAGGCTTGCCTCGGATTCGCCTTCCCTTTCTCTCATTTTCCC
CCTGCATCTCCTAGCCATCATGGCCACCCCACAACCCTGGGAAATAGTCT
AGCAGCATATCATTTTCATAAAAACTACCTTTCTACTGTCCGTGTGAGCC
TTCTCACCACCCTTCTCATACCCGACATAACAGGCCAACCACAACCGCGC
CCGCGGCACGCCAACCGCCATGTCTGCCGGCAAATTTTCTCCCTTCCTGT
CCGCCACCACCTTTGCTGTCGTCGGGGCTAGCACCCGCCGCGAGAAATTC
GGAAATAAGGTGCTCAGATGCTATCTCCAAGACGGCAAGAAGGCTATTCC
CATCAATCCGAGAGAAAAAGAGATCGAGGGCCTTCCTTGCCTTGCCAACC
TTTCCTTTCTGACCTGCCCATCTGAGACGGCAGTTTCTGTCATTACTCCT
CCTGCGGTCACTGTGAGCGTGCTCGAACAGGCTGCCAAGCTGGGAATAAA
GCATGTGTGGCTGCAACCGGGCTGTGAGAGTCCCGAGGCGATTGCCACGG
CGGAGAGAGTTGGCTTGCTTCCCACTTTGATCTTTGGTGGCCCATGCGTC
TTGGTGGAACTCGGCTTTGAGGGGAGGGATCATTGATTGGGGTTAAGAAC
TGACAACAAGAACGGGAATGAAGGTATGGGAACGCCATGAGATTGTTAAG
TTTTACGAATGCGAGGGGAATTGGCCAGGTTGCAGAGGTGTTTGCTAGGG
TGTGCAGTGGCGGGCTTGAGGGTTTGGGTACGGGGACGGGGAGGTCTGAA
GCCATGGACCAGAAGATGTCTAGAAGAGCAGAGCAAATGAGAAAAGTCGT
CTCTTAAAGCCTTCGTAATCAGCTATGTCTGTGCTTCGTGTACAGGAAAT
TTGTGCCGCATGTGAACGAAGGAATCCATGCCAAAAGCGCAACGGACTTA
TCTATCCATCTATCTATCTAT
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Coding sequence (CDS) from alignment at chr21:526698..527918-

>NO21G01770.1 ID=NO21G01770.1|Name=NO21G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at chr21:526698..527918- (Nannochloropsis oceanica)
ATGTCTGCCGGCAAATTTTCTCCCTTCCTGTCCGCCACCACCTTTGCTGT
CGTCGGGGCTAGCACCCGCCGCGAGAAATTCGGAAATAAGGTGCTCAGAT
GCTATCTCCAAGACGGCAAGAAGGCTATTCCCATCAATCCGAGAGAAAAA
GAGATCGAGGGCCTTCCTTGCCTTGCCAACCTTTCCTTTCTGACCTGCCC
ATCTGAGACGGCAGTTTCTGTCATTACTCCTCCTGCGGTCACTGTGAGCG
TGCTCGAACAGGCTGCCAAGCTGGGAATAAAGCATGTGTGGCTGCAACCG
GGCTGTGAGAGTCCCGAGGCGATTGCCACGGCGGAGAGAGTTGGCTTGCT
TCCCACTTTGATCTTTGGTGGCCCATGCGTCTTGGTGGAACTCGGCTTTG
AGGGGAGGGATCATTGA
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Synonyms
Publications