NO21G01740, NO21G01740 (gene) Nannochloropsis oceanica

Overview
NameNO21G01740
Unique NameNO21G01740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3058
Alignment locationchr21:520132..523189 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:520132..523189 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036855Znf_CCCH_sf
IPR000571Znf_CCCH
Homology
[Close]
BLAST of NO21G01740 vs. NCBI_GenBank
Match: CBN80257.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 125.2 bits (313), Expect = 7.900e-25
Identity = 61/122 (50.00%), Postives = 77/122 (63.11%), Query Frame = 0 
Query:  153 IIESHRKTEMCRNWPRCR---YGVSCAFAHSPSELRRLTLEEMEQSGRIPNKGKFRIFPCLTWVMTGTCPYRDRCVFIHDARVKGEQEAYLFATPGSNNAHL-----SSKSPL-----WWPD 262
            ++  +RKTE+CRNW + R       CAFAH   ELRR +L++ME +GRIPN  KFR +PCLTW+ TG CPY  RCVFIHD R++G   AYL+   G N +H      S  SPL     +WPD
Sbjct:    8 LVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLDQMEYTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRIRGPTAAYLYKHNG-NRSHSTRSGGSVGSPLGRDIFYWPD 128
[Close]
BLAST of NO21G01740 vs. NCBI_GenBank
Match: CBJ28880.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.4 bits (246), Expect = 4.700e-17
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 0 
Query:  153 IIESHRKTEMCRNWPR--CRYGVSCAFAHSPSELRRLTLEEMEQSGRIPNKGKFRIFPCLTWVMTGTCPYRDRCVFIHDARVKG 235
            IIE +RKTE+CRN+    C +G  CAFAH   +++  TL ++E+ GRI +  K++   C TWV TGTC Y  RCVFIHD RVKG
Sbjct:   33 IIEHNRKTELCRNYENGSCTFGDRCAFAHGLDDIKHKTLRDLEKEGRIADASKYQACLCQTWVATGTCLYGRRCVFIHDDRVKG 116
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BLAST of NO21G01740 vs. NCBI_GenBank
Match: EJK72303.1 (hypothetical protein THAOC_06179 [Thalassiosira oceanica])

HSP 1 Score: 85.5 bits (210), Expect = 7.000e-13
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 0 
Query:  159 KTEMCRNW---PRCRYGVSCAFAHSPSEL--RRLTLEEMEQSGRIPNKGKFRIFPCLTWVMTGTCPYRDRCVFIHDARVKGEQE-AYLFATPGSNNAHL 252
            K+E+C+ +    RC +G  C +AH   EL  R  TL +ME+SG+I N G +   PC+TWV TG CP+  RC  IHD  V    E A+L A P + NA +
Sbjct:  250 KSELCQYYSSGQRCPFGDRCNYAHGKHELKQRHTTLLQMERSGQIVNAGAYLSRPCMTWVSTGCCPFGRRCTSIHDPLVSAHHETAWLPAAPAATNARV 348
[Close]
BLAST of NO21G01740 vs. NCBI_GenBank
Match: XP_002296381.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED87077.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 74.3 bits (181), Expect = 1.600e-9
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 0 
Query:  159 KTEMCRNW---PRCRYGVSCAFAHSPSELRRLTLEEMEQSGRIPNKGKFRIFPCLTWVMTGTCPYRDRCVFIHDARVKGEQEAYL 241
            KTE+CR +     C +G  C +AH   EL+   L ++E +G + +   FR  PC TWV TG CP+  RC  +HD RV G Q ++L
Sbjct:  254 KTELCRYFNSAKGCIFGDKCNYAHGEQELKFNKLMDLEVAGLV-DVEVFRTHPCFTWVATGACPFDQRCTRLHDPRVNGLQPSWL 337
[Close]
BLAST of NO21G01740 vs. NCBI_GenBank
Match: XP_002294864.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED87644.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 70.9 bits (172), Expect = 1.800e-8
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 0 
Query:  159 KTEMCRNWPR---CRYGVSCAFAHSPSELRRL-TLEEMEQSGRIPNKGKFRIFPCLTWVMTGTCPYRDRCVFIHDARVKGEQE 238
            KTEMCRN  +   C++  +C FAHS  ELR+  T+EEM ++G I +   +   PC   V TG+CPY  RC  +H   ++  ++
Sbjct:  226 KTEMCRNILKIGYCQFKENCHFAHSKEELRKFETVEEMHEAGLITDPKNYMARPCFFGVSTGSCPYGARCKSLHPPNIQDNED 308
[Close]
BLAST of NO21G01740 vs. NCBI_GenBank
Match: CBJ32355.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 69.7 bits (169), Expect = 3.900e-8
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0 
Query:  210 LTWVMTGTCPYRDRCVFIHDARVKGEQEAYLFATPGSNNAHLSSKSPLWWPD 262
            +TWV TG+CPY  RCVFIHD RV+G QEA+L+A    ++A+ SS S  ++PD
Sbjct:    1 MTWVATGSCPYSSRCVFIHDPRVQGRQEAWLYAGSHMSSAYHSSDSAFFFPD 52
The following BLAST results are available for this feature:
BLAST of NO21G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
CBN80257.17.900e-2550.00conserved unknown protein [Ectocarpus siliculosus][more]
CBJ28880.14.700e-1752.38conserved unknown protein [Ectocarpus siliculosus][more]
EJK72303.17.000e-1343.43hypothetical protein THAOC_06179 [Thalassiosira oc... [more]
XP_002296381.11.600e-941.18predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002294864.11.800e-839.76predicted protein [Thalassiosira pseudonana CCMP13... [more]
CBJ32355.13.900e-855.77conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004606NSK004606Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01740.1NO21G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673436gene_8137Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01740.1NO21G01740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01740 ID=NO21G01740|Name=NO21G01740|organism=Nannochloropsis oceanica|type=gene|length=3058bp
TTCCTGAACCTTCTGGCCCCCTTCCCTCTCCACCACACAACACACAGCAC
ACAACACCAAGCAGCCCCAAATTAACCATCACAACCATAATAATACAGTT
TAATCAGCAGCGCATGCCGTCCATGTTTCACTGGGGAGGTGGGAACGGGT
GGGAGTGGGAGCAGGCGTGGACAGGCGAGGACGCTACGTCCTCTTCCTAC
CAGCAGCATCAACAGCAGCGAGAGCACCTCGATGCTAGCCAGCAATTTCA
CCAGCACCCGCTCCAGATGCCAGACTACCAAAGTCAGGGGGCGCGGCACA
GGAGGAAGAACGCCGATGCCCCTCCTCCTCTTCCCCCTCACCACCGCACC
AGCTCCTCCTCGTCCTTGGCTGCCTCATCTTCCTCCTGGCGTGATCACAA
CCTCAAACCGCCTCTGACACCCACTCTCTCCCCAACGATATCAACGATGC
TTTCCCCGTCGTCTGGTAGCAGCAGCAGTGGCATCAGTATCAGCGGCAGC
GCTAAAGGAAAGAGCGGCCGCTCGGGATCTTCGTCGTCTTCCTCCTCCCC
CTCCCCTACTTCCTCCTCTATTATTGAGAGTCATCGCAAGACAGAGATGT
GTCGAAACTGGCCGCGTTGCCGATATGGCGTTTCCTGCGCCTTTGCCCAC
TCCCCCTCCGAGCTGCGCCGCTTGACTCTAGAGGAGATGGAGCAGAGTGG
CCGCATCCCCAACAAGGGCAAGTTCCGCATCTTCCCCTGTCTCACCTGGG
TCATGACTGGCACCTGTCCTTACCGCGATCGCTGCGTTTTTATCCACGAT
GCTAGGGTGAAGGGCGAGCAGGAAGCCTACCTGTTCGCGACCCCCGGCAG
TAATAACGCTCACCTGTCATCAAAATCACCTCTTTGGTGGCCAGACTACC
TCCCCTCTTCCTCTTCCTCCTCCTTATCCTCCTCCTTCTCTTCCTCCACT
GCTTCCTCCGTTAGTGCCTCTACAACGCAGTACGAGGTGGTGGGGAAGGA
TGGTGGACTGACGTTCTTTGAAGCAACCGTAAAGGCTATTTGGGAGGGGT
ACAAACACATCATGGGCAACATTCCCGCCCTCGGGGAGGAAGGGGGAGGG
GAAAACGGGGGGGAAGAAGGCTGCGAGGCGGCTTTGAATCGCTTGCCTAT
TTTCTTGGCCATCTCTCGTTTGCACCAAAAACAACAGCTGCAACATTGGG
AGCAGCAGCAGCAGCAGCAACAACAAGAGCAGCAGCAGCAGTCCTGGAAG
AAGTACCTGACGGCGACAGCATCAGCAGGAGCAGCAGCAACAGCTGCAGC
GACGGCTGAGACAACTGGAGCAGACGACGGCTTTGGTTCTGGGTATGTGA
TGGGCACGTCGCTATCGCAATCCTCCCCCTCTCTCTCCTACTCCACCTCC
TCCTTCCCATCCTCCTTCGATGCTTACGCGCACATCATTCACGCAGCAGC
TTCACTCCCTGCCCACGCCGTTGTCTCCTTGACGCATCCTACTGCTCCTG
CTGCAACTGGTGCCCCTAAACCCTCTACCAGTAGCGTGGATGCAGTTGTC
GCAGTTGTCATGTCTCAAACCCGATTCCAGAATCAGCAGTCACAGCTGCA
CAAGCAGCAACAGCGGCAACACTCCCCCTCTTTAGTTTTTGTGTCATCCT
CCTCGGACGACGACGACAACAACAACAACAGCAGCAGCAGAAGCAGCAGC
AGCAGCAGCAACGGCAATAACAGCTATGATACCTCTGTCCTTCCCTTACT
TCTGCTCCCCTCCCCTGCACTGATCTTCCCTCTCCCCTCCTCCTCCTCCT
CCTCCTCCTCCCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCC
TCTCCACCCCTCTCCACCTCATCCTCCTACTTGATCAACAATTGGAATTC
AAGCACCTGGCCCTCCTCCCCCGCAACAACTTCCGAGACCTATTCTCCCG
CTCTCAGCATCACTTCTGCCGCCTTCTCGCCTGCCTTTCCCAGTCTCACT
CTCAGCCCCTTCTCAATCGCACCTTCGCCCTCAGCTGGTCCCTCATCTCC
CCCCTCGCCATCGTTCTCATTGAAAAGTTTTGACGAGATGGTGGGGAAGG
AGGGAGGAAAGCTACCGTCGGAGATGCTGGTGGACGGGGAAGAGGAAGAG
GAATAGAGACAGGACGACGAGAGGGAGGAAGAGGAAAGAGTGGCGTGTTC
TTGGTTTTGTTTTGAGTATGCTTTGTCTTCATTAAGGCGCGAGGTTTTGG
ATGGGTTGGAGTGAAGTGTAAGACTTACTAGATTGACATGTGAAGGATGG
CAAACCGAGCCAAAAAAGGCCTTGGAGAGGTACGATTGGCGCAAGGCGAC
GAAAAATTGAGAGAAGAAAGTTAGATGCCAATCGAGAAGGGAAAAACAAG
AGATTTTGTACATACCATGTACTCTCTTGCAGAGGTGAATGACCGTAGGG
AGGCAGGGGGTTTAATGGGAGGGTTCTTCTTCGCAGAGGTTTTTAGTTCG
AGGCATTGCTTGTGTTCATGTGTATGGGTTTGAAAAGACTTTAATGACTG
GGAGGACCCCCACTGGTCAGTAACAAGTGCCGATGGAAAGCAGCCCGATC
AGAATGAAAGCAAAGTTACAGAGAAATAGATTGACAGAGATGAGGGGAGC
CCTATGCGTCCTTACACATCCAGTCACAAGAGTACATCGCTTTATGTACA
GCATTTTGACATGGAGGTTGAGCGGTAAACAAAAAAAGAGTCTCATAGTA
GAGCAGTTAGTCCGTAGCACTGAGAGCGTAAACACGCCATGGATGTCAAT
GAAAGGAAGTAATGACAGCCACACAAAAATGATATGAAAAGATGAATTGA
GAGAATGAATGATAAGCTACGGGATTAATTGGCTAGAAGGGTCCCAAAAA
AGAAACGAGAAACAGAAAGGGAATGGCGATGCATGTGAAGAGACAAGGGC
GAATGGTTGACAAGTCGAGCACGGGGATCTATACAATCAAGTGTTTAGTA
TGGGTCCCCTTGAGTCGAGGAAGCGCGGGTGCCGAGAACAAGGAAAAACA
GAAGAAAA
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protein sequence of NO21G01740.1

>NO21G01740.1-protein ID=NO21G01740.1-protein|Name=NO21G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=681bp
MPSMFHWGGGNGWEWEQAWTGEDATSSSYQQHQQQREHLDASQQFHQHPL
QMPDYQSQGARHRRKNADAPPPLPPHHRTSSSSSLAASSSSWRDHNLKPP
LTPTLSPTISTMLSPSSGSSSSGISISGSAKGKSGRSGSSSSSSSPSPTS
SSIIESHRKTEMCRNWPRCRYGVSCAFAHSPSELRRLTLEEMEQSGRIPN
KGKFRIFPCLTWVMTGTCPYRDRCVFIHDARVKGEQEAYLFATPGSNNAH
LSSKSPLWWPDYLPSSSSSSLSSSFSSSTASSVSASTTQYEVVGKDGGLT
FFEATVKAIWEGYKHIMGNIPALGEEGGGENGGEEGCEAALNRLPIFLAI
SRLHQKQQLQHWEQQQQQQQQEQQQQSWKKYLTATASAGAAATAAATAET
TGADDGFGSGYVMGTSLSQSSPSLSYSTSSFPSSFDAYAHIIHAAASLPA
HAVVSLTHPTAPAATGAPKPSTSSVDAVVAVVMSQTRFQNQQSQLHKQQQ
RQHSPSLVFVSSSSDDDDNNNNSSSRSSSSSSNGNNSYDTSVLPLLLLPS
PALIFPLPSSSSSSSSPSPSSSSSSSSSPSPPLSTSSSYLINNWNSSTWP
SSPATTSETYSPALSITSAAFSPAFPSLTLSPFSIAPSPSAGPSSPPSPS
FSLKSFDEMVGKEGGKLPSEMLVDGEEEEE*
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Synonyms
Publications