Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr21 | genome | chr21:520132..523189 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01740.1 vs.
Match: CBN80257.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 123.2 bits (308), Expect = 3.000e-24 Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 0 Query: 150 SSSIIESHRKTEMCRNWPRCRYGVS---CAFAHSPSELRRLTLEEMEQSGRIPNKGKFRIFPCLTWVMTGTCPYRDRCVFIHDARVKGEQEAYLFATPGSNNAHL-----SSKSPL-----WWPD 262
S ++ +RKTE+CRNW + R CAFAH ELRR +L++ME +GRIPN KFR +PCLTW+ TG CPY RCVFIHD R++G AYL+ G N +H S SPL +WPD
Sbjct: 5 SLDLVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLDQMEYTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRIRGPTAAYLYKHNG-NRSHSTRSGGSVGSPLGRDIFYWPD 128
The following BLAST results are available for this feature:
BLAST of NO21G01740.1 vs.
Analysis Date: 2017-10-25 ( Homology annotation for N. oceanica IMET1)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| CBN80257.1 | 3.000e-24 | 49.60 | conserved unknown protein [Ectocarpus siliculosus] | [more] |
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01740.1 ID=NO21G01740.1|Name=NO21G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=3058bp
TTCCTGAACCTTCTGGCCCCCTTCCCTCTCCACCACACAACACACAGCAC
ACAACACCAAGCAGCCCCAAATTAACCATCACAACCATAATAATACAGTT
TAATCAGCAGCGCATGCCGTCCATGTTTCACTGGGGAGGTGGGAACGGGT
GGGAGTGGGAGCAGGCGTGGACAGGCGAGGACGCTACGTCCTCTTCCTAC
CAGCAGCATCAACAGCAGCGAGAGCACCTCGATGCTAGCCAGCAATTTCA
CCAGCACCCGCTCCAGATGCCAGACTACCAAAGTCAGGGGGCGCGGCACA
GGAGGAAGAACGCCGATGCCCCTCCTCCTCTTCCCCCTCACCACCGCACC
AGCTCCTCCTCGTCCTTGGCTGCCTCATCTTCCTCCTGGCGTGATCACAA
CCTCAAACCGCCTCTGACACCCACTCTCTCCCCAACGATATCAACGATGC
TTTCCCCGTCGTCTGGTAGCAGCAGCAGTGGCATCAGTATCAGCGGCAGC
GCTAAAGGAAAGAGCGGCCGCTCGGGATCTTCGTCGTCTTCCTCCTCCCC
CTCCCCTACTTCCTCCTCTATTATTGAGAGTCATCGCAAGACAGAGATGT
GTCGAAACTGGCCGCGTTGCCGATATGGCGTTTCCTGCGCCTTTGCCCAC
TCCCCCTCCGAGCTGCGCCGCTTGACTCTAGAGGAGATGGAGCAGAGTGG
CCGCATCCCCAACAAGGGCAAGTTCCGCATCTTCCCCTGTCTCACCTGGG
TCATGACTGGCACCTGTCCTTACCGCGATCGCTGCGTTTTTATCCACGAT
GCTAGGGTGAAGGGCGAGCAGGAAGCCTACCTGTTCGCGACCCCCGGCAG
TAATAACGCTCACCTGTCATCAAAATCACCTCTTTGGTGGCCAGACTACC
TCCCCTCTTCCTCTTCCTCCTCCTTATCCTCCTCCTTCTCTTCCTCCACT
GCTTCCTCCGTTAGTGCCTCTACAACGCAGTACGAGGTGGTGGGGAAGGA
TGGTGGACTGACGTTCTTTGAAGCAACCGTAAAGGCTATTTGGGAGGGGT
ACAAACACATCATGGGCAACATTCCCGCCCTCGGGGAGGAAGGGGGAGGG
GAAAACGGGGGGGAAGAAGGCTGCGAGGCGGCTTTGAATCGCTTGCCTAT
TTTCTTGGCCATCTCTCGTTTGCACCAAAAACAACAGCTGCAACATTGGG
AGCAGCAGCAGCAGCAGCAACAACAAGAGCAGCAGCAGCAGTCCTGGAAG
AAGTACCTGACGGCGACAGCATCAGCAGGAGCAGCAGCAACAGCTGCAGC
GACGGCTGAGACAACTGGAGCAGACGACGGCTTTGGTTCTGGGTATGTGA
TGGGCACGTCGCTATCGCAATCCTCCCCCTCTCTCTCCTACTCCACCTCC
TCCTTCCCATCCTCCTTCGATGCTTACGCGCACATCATTCACGCAGCAGC
TTCACTCCCTGCCCACGCCGTTGTCTCCTTGACGCATCCTACTGCTCCTG
CTGCAACTGGTGCCCCTAAACCCTCTACCAGTAGCGTGGATGCAGTTGTC
GCAGTTGTCATGTCTCAAACCCGATTCCAGAATCAGCAGTCACAGCTGCA
CAAGCAGCAACAGCGGCAACACTCCCCCTCTTTAGTTTTTGTGTCATCCT
CCTCGGACGACGACGACAACAACAACAACAGCAGCAGCAGAAGCAGCAGC
AGCAGCAGCAACGGCAATAACAGCTATGATACCTCTGTCCTTCCCTTACT
TCTGCTCCCCTCCCCTGCACTGATCTTCCCTCTCCCCTCCTCCTCCTCCT
CCTCCTCCTCCCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCC
TCTCCACCCCTCTCCACCTCATCCTCCTACTTGATCAACAATTGGAATTC
AAGCACCTGGCCCTCCTCCCCCGCAACAACTTCCGAGACCTATTCTCCCG
CTCTCAGCATCACTTCTGCCGCCTTCTCGCCTGCCTTTCCCAGTCTCACT
CTCAGCCCCTTCTCAATCGCACCTTCGCCCTCAGCTGGTCCCTCATCTCC
CCCCTCGCCATCGTTCTCATTGAAAAGTTTTGACGAGATGGTGGGGAAGG
AGGGAGGAAAGCTACCGTCGGAGATGCTGGTGGACGGGGAAGAGGAAGAG
GAATAGAGACAGGACGACGAGAGGGAGGAAGAGGAAAGAGTGGCGTGTTC
TTGGTTTTGTTTTGAGTATGCTTTGTCTTCATTAAGGCGCGAGGTTTTGG
ATGGGTTGGAGTGAAGTGTAAGACTTACTAGATTGACATGTGAAGGATGG
CAAACCGAGCCAAAAAAGGCCTTGGAGAGGTACGATTGGCGCAAGGCGAC
GAAAAATTGAGAGAAGAAAGTTAGATGCCAATCGAGAAGGGAAAAACAAG
AGATTTTGTACATACCATGTACTCTCTTGCAGAGGTGAATGACCGTAGGG
AGGCAGGGGGTTTAATGGGAGGGTTCTTCTTCGCAGAGGTTTTTAGTTCG
AGGCATTGCTTGTGTTCATGTGTATGGGTTTGAAAAGACTTTAATGACTG
GGAGGACCCCCACTGGTCAGTAACAAGTGCCGATGGAAAGCAGCCCGATC
AGAATGAAAGCAAAGTTACAGAGAAATAGATTGACAGAGATGAGGGGAGC
CCTATGCGTCCTTACACATCCAGTCACAAGAGTACATCGCTTTATGTACA
GCATTTTGACATGGAGGTTGAGCGGTAAACAAAAAAAGAGTCTCATAGTA
GAGCAGTTAGTCCGTAGCACTGAGAGCGTAAACACGCCATGGATGTCAAT
GAAAGGAAGTAATGACAGCCACACAAAAATGATATGAAAAGATGAATTGA
GAGAATGAATGATAAGCTACGGGATTAATTGGCTAGAAGGGTCCCAAAAA
AGAAACGAGAAACAGAAAGGGAATGGCGATGCATGTGAAGAGACAAGGGC
GAATGGTTGACAAGTCGAGCACGGGGATCTATACAATCAAGTGTTTAGTA
TGGGTCCCCTTGAGTCGAGGAAGCGCGGGTGCCGAGAACAAGGAAAAACA
GAAGAAAA back to topprotein sequence of NO21G01740.1 >NO21G01740.1-protein ID=NO21G01740.1-protein|Name=NO21G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=681bp
MPSMFHWGGGNGWEWEQAWTGEDATSSSYQQHQQQREHLDASQQFHQHPL
QMPDYQSQGARHRRKNADAPPPLPPHHRTSSSSSLAASSSSWRDHNLKPP
LTPTLSPTISTMLSPSSGSSSSGISISGSAKGKSGRSGSSSSSSSPSPTS
SSIIESHRKTEMCRNWPRCRYGVSCAFAHSPSELRRLTLEEMEQSGRIPN
KGKFRIFPCLTWVMTGTCPYRDRCVFIHDARVKGEQEAYLFATPGSNNAH
LSSKSPLWWPDYLPSSSSSSLSSSFSSSTASSVSASTTQYEVVGKDGGLT
FFEATVKAIWEGYKHIMGNIPALGEEGGGENGGEEGCEAALNRLPIFLAI
SRLHQKQQLQHWEQQQQQQQQEQQQQSWKKYLTATASAGAAATAAATAET
TGADDGFGSGYVMGTSLSQSSPSLSYSTSSFPSSFDAYAHIIHAAASLPA
HAVVSLTHPTAPAATGAPKPSTSSVDAVVAVVMSQTRFQNQQSQLHKQQQ
RQHSPSLVFVSSSSDDDDNNNNSSSRSSSSSSNGNNSYDTSVLPLLLLPS
PALIFPLPSSSSSSSSPSPSSSSSSSSSPSPPLSTSSSYLINNWNSSTWP
SSPATTSETYSPALSITSAAFSPAFPSLTLSPFSIAPSPSAGPSSPPSPS
FSLKSFDEMVGKEGGKLPSEMLVDGEEEEE* back to topmRNA from alignment at chr21:520132..523189- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01740.1 ID=NO21G01740.1|Name=NO21G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=3058bp|location=Sequence derived from alignment at chr21:520132..523189- (Nannochloropsis oceanica)
TTCCTGAACCTTCTGGCCCCCTTCCCTCTCCACCACACAACACACAGCAC
ACAACACCAAGCAGCCCCAAATTAACCATCACAACCATAATAATACAGTT
TAATCAGCAGCGCATGCCGTCCATGTTTCACTGGGGAGGTGGGAACGGGT
GGGAGTGGGAGCAGGCGTGGACAGGCGAGGACGCTACGTCCTCTTCCTAC
CAGCAGCATCAACAGCAGCGAGAGCACCTCGATGCTAGCCAGCAATTTCA
CCAGCACCCGCTCCAGATGCCAGACTACCAAAGTCAGGGGGCGCGGCACA
GGAGGAAGAACGCCGATGCCCCTCCTCCTCTTCCCCCTCACCACCGCACC
AGCTCCTCCTCGTCCTTGGCTGCCTCATCTTCCTCCTGGCGTGATCACAA
CCTCAAACCGCCTCTGACACCCACTCTCTCCCCAACGATATCAACGATGC
TTTCCCCGTCGTCTGGTAGCAGCAGCAGTGGCATCAGTATCAGCGGCAGC
GCTAAAGGAAAGAGCGGCCGCTCGGGATCTTCGTCGTCTTCCTCCTCCCC
CTCCCCTACTTCCTCCTCTATTATTGAGAGTCATCGCAAGACAGAGATGT
GTCGAAACTGGCCGCGTTGCCGATATGGCGTTTCCTGCGCCTTTGCCCAC
TCCCCCTCCGAGCTGCGCCGCTTGACTCTAGAGGAGATGGAGCAGAGTGG
CCGCATCCCCAACAAGGGCAAGTTCCGCATCTTCCCCTGTCTCACCTGGG
TCATGACTGGCACCTGTCCTTACCGCGATCGCTGCGTTTTTATCCACGAT
GCTAGGGTGAAGGGCGAGCAGGAAGCCTACCTGTTCGCGACCCCCGGCAG
TAATAACGCTCACCTGTCATCAAAATCACCTCTTTGGTGGCCAGACTACC
TCCCCTCTTCCTCTTCCTCCTCCTTATCCTCCTCCTTCTCTTCCTCCACT
GCTTCCTCCGTTAGTGCCTCTACAACGCAGTACGAGGTGGTGGGGAAGGA
TGGTGGACTGACGTTCTTTGAAGCAACCGTAAAGGCTATTTGGGAGGGGT
ACAAACACATCATGGGCAACATTCCCGCCCTCGGGGAGGAAGGGGGAGGG
GAAAACGGGGGGGAAGAAGGCTGCGAGGCGGCTTTGAATCGCTTGCCTAT
TTTCTTGGCCATCTCTCGTTTGCACCAAAAACAACAGCTGCAACATTGGG
AGCAGCAGCAGCAGCAGCAACAACAAGAGCAGCAGCAGCAGTCCTGGAAG
AAGTACCTGACGGCGACAGCATCAGCAGGAGCAGCAGCAACAGCTGCAGC
GACGGCTGAGACAACTGGAGCAGACGACGGCTTTGGTTCTGGGTATGTGA
TGGGCACGTCGCTATCGCAATCCTCCCCCTCTCTCTCCTACTCCACCTCC
TCCTTCCCATCCTCCTTCGATGCTTACGCGCACATCATTCACGCAGCAGC
TTCACTCCCTGCCCACGCCGTTGTCTCCTTGACGCATCCTACTGCTCCTG
CTGCAACTGGTGCCCCTAAACCCTCTACCAGTAGCGTGGATGCAGTTGTC
GCAGTTGTCATGTCTCAAACCCGATTCCAGAATCAGCAGTCACAGCTGCA
CAAGCAGCAACAGCGGCAACACTCCCCCTCTTTAGTTTTTGTGTCATCCT
CCTCGGACGACGACGACAACAACAACAACAGCAGCAGCAGAAGCAGCAGC
AGCAGCAGCAACGGCAATAACAGCTATGATACCTCTGTCCTTCCCTTACT
TCTGCTCCCCTCCCCTGCACTGATCTTCCCTCTCCCCTCCTCCTCCTCCT
CCTCCTCCTCCCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCC
TCTCCACCCCTCTCCACCTCATCCTCCTACTTGATCAACAATTGGAATTC
AAGCACCTGGCCCTCCTCCCCCGCAACAACTTCCGAGACCTATTCTCCCG
CTCTCAGCATCACTTCTGCCGCCTTCTCGCCTGCCTTTCCCAGTCTCACT
CTCAGCCCCTTCTCAATCGCACCTTCGCCCTCAGCTGGTCCCTCATCTCC
CCCCTCGCCATCGTTCTCATTGAAAAGTTTTGACGAGATGGTGGGGAAGG
AGGGAGGAAAGCTACCGTCGGAGATGCTGGTGGACGGGGAAGAGGAAGAG
GAATAGAGACAGGACGACGAGAGGGAGGAAGAGGAAAGAGTGGCGTGTTC
TTGGTTTTGTTTTGAGTATGCTTTGTCTTCATTAAGGCGCGAGGTTTTGG
ATGGGTTGGAGTGAAGTGTAAGACTTACTAGATTGACATGTGAAGGATGG
CAAACCGAGCCAAAAAAGGCCTTGGAGAGGTACGATTGGCGCAAGGCGAC
GAAAAATTGAGAGAAGAAAGTTAGATGCCAATCGAGAAGGGAAAAACAAG
AGATTTTGTACATACCATGTACTCTCTTGCAGAGGTGAATGACCGTAGGG
AGGCAGGGGGTTTAATGGGAGGGTTCTTCTTCGCAGAGGTTTTTAGTTCG
AGGCATTGCTTGTGTTCATGTGTATGGGTTTGAAAAGACTTTAATGACTG
GGAGGACCCCCACTGGTCAGTAACAAGTGCCGATGGAAAGCAGCCCGATC
AGAATGAAAGCAAAGTTACAGAGAAATAGATTGACAGAGATGAGGGGAGC
CCTATGCGTCCTTACACATCCAGTCACAAGAGTACATCGCTTTATGTACA
GCATTTTGACATGGAGGTTGAGCGGTAAACAAAAAAAGAGTCTCATAGTA
GAGCAGTTAGTCCGTAGCACTGAGAGCGTAAACACGCCATGGATGTCAAT
GAAAGGAAGTAATGACAGCCACACAAAAATGATATGAAAAGATGAATTGA
GAGAATGAATGATAAGCTACGGGATTAATTGGCTAGAAGGGTCCCAAAAA
AGAAACGAGAAACAGAAAGGGAATGGCGATGCATGTGAAGAGACAAGGGC
GAATGGTTGACAAGTCGAGCACGGGGATCTATACAATCAAGTGTTTAGTA
TGGGTCCCCTTGAGTCGAGGAAGCGCGGGTGCCGAGAACAAGGAAAAACA
GAAGAAAA back to topCoding sequence (CDS) from alignment at chr21:520132..523189- >NO21G01740.1 ID=NO21G01740.1|Name=NO21G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=2043bp|location=Sequence derived from alignment at chr21:520132..523189- (Nannochloropsis oceanica)
ATGCCGTCCATGTTTCACTGGGGAGGTGGGAACGGGTGGGAGTGGGAGCA
GGCGTGGACAGGCGAGGACGCTACGTCCTCTTCCTACCAGCAGCATCAAC
AGCAGCGAGAGCACCTCGATGCTAGCCAGCAATTTCACCAGCACCCGCTC
CAGATGCCAGACTACCAAAGTCAGGGGGCGCGGCACAGGAGGAAGAACGC
CGATGCCCCTCCTCCTCTTCCCCCTCACCACCGCACCAGCTCCTCCTCGT
CCTTGGCTGCCTCATCTTCCTCCTGGCGTGATCACAACCTCAAACCGCCT
CTGACACCCACTCTCTCCCCAACGATATCAACGATGCTTTCCCCGTCGTC
TGGTAGCAGCAGCAGTGGCATCAGTATCAGCGGCAGCGCTAAAGGAAAGA
GCGGCCGCTCGGGATCTTCGTCGTCTTCCTCCTCCCCCTCCCCTACTTCC
TCCTCTATTATTGAGAGTCATCGCAAGACAGAGATGTGTCGAAACTGGCC
GCGTTGCCGATATGGCGTTTCCTGCGCCTTTGCCCACTCCCCCTCCGAGC
TGCGCCGCTTGACTCTAGAGGAGATGGAGCAGAGTGGCCGCATCCCCAAC
AAGGGCAAGTTCCGCATCTTCCCCTGTCTCACCTGGGTCATGACTGGCAC
CTGTCCTTACCGCGATCGCTGCGTTTTTATCCACGATGCTAGGGTGAAGG
GCGAGCAGGAAGCCTACCTGTTCGCGACCCCCGGCAGTAATAACGCTCAC
CTGTCATCAAAATCACCTCTTTGGTGGCCAGACTACCTCCCCTCTTCCTC
TTCCTCCTCCTTATCCTCCTCCTTCTCTTCCTCCACTGCTTCCTCCGTTA
GTGCCTCTACAACGCAGTACGAGGTGGTGGGGAAGGATGGTGGACTGACG
TTCTTTGAAGCAACCGTAAAGGCTATTTGGGAGGGGTACAAACACATCAT
GGGCAACATTCCCGCCCTCGGGGAGGAAGGGGGAGGGGAAAACGGGGGGG
AAGAAGGCTGCGAGGCGGCTTTGAATCGCTTGCCTATTTTCTTGGCCATC
TCTCGTTTGCACCAAAAACAACAGCTGCAACATTGGGAGCAGCAGCAGCA
GCAGCAACAACAAGAGCAGCAGCAGCAGTCCTGGAAGAAGTACCTGACGG
CGACAGCATCAGCAGGAGCAGCAGCAACAGCTGCAGCGACGGCTGAGACA
ACTGGAGCAGACGACGGCTTTGGTTCTGGGTATGTGATGGGCACGTCGCT
ATCGCAATCCTCCCCCTCTCTCTCCTACTCCACCTCCTCCTTCCCATCCT
CCTTCGATGCTTACGCGCACATCATTCACGCAGCAGCTTCACTCCCTGCC
CACGCCGTTGTCTCCTTGACGCATCCTACTGCTCCTGCTGCAACTGGTGC
CCCTAAACCCTCTACCAGTAGCGTGGATGCAGTTGTCGCAGTTGTCATGT
CTCAAACCCGATTCCAGAATCAGCAGTCACAGCTGCACAAGCAGCAACAG
CGGCAACACTCCCCCTCTTTAGTTTTTGTGTCATCCTCCTCGGACGACGA
CGACAACAACAACAACAGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAACG
GCAATAACAGCTATGATACCTCTGTCCTTCCCTTACTTCTGCTCCCCTCC
CCTGCACTGATCTTCCCTCTCCCCTCCTCCTCCTCCTCCTCCTCCTCCCC
CTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCCTCTCCACCCCTCT
CCACCTCATCCTCCTACTTGATCAACAATTGGAATTCAAGCACCTGGCCC
TCCTCCCCCGCAACAACTTCCGAGACCTATTCTCCCGCTCTCAGCATCAC
TTCTGCCGCCTTCTCGCCTGCCTTTCCCAGTCTCACTCTCAGCCCCTTCT
CAATCGCACCTTCGCCCTCAGCTGGTCCCTCATCTCCCCCCTCGCCATCG
TTCTCATTGAAAAGTTTTGACGAGATGGTGGGGAAGGAGGGAGGAAAGCT
ACCGTCGGAGATGCTGGTGGACGGGGAAGAGGAAGAGGAATAG back to top
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