NO21G01630, NO21G01630 (gene) Nannochloropsis oceanica

Overview
NameNO21G01630
Unique NameNO21G01630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1209
Alignment locationchr21:484498..485706 -

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Properties
Property NameValue
DescriptionReticulon 4 interacting protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:484498..485706 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
Homology
BLAST of NO21G01630 vs. NCBI_GenBank
Match: EWM22629.1 (reticulon 4 interacting protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 566.6 bits (1459), Expect = 6.100e-158
Identity = 275/379 (72.56%), Postives = 320/379 (84.43%), Query Frame = 0
Query:   24 LMLKVLLQLSTPATAFQTPAPWRVRHAPLRSVTMATPNSASQQKHDNGNEAILTIVIERAASHTILPGALATHGRLLKSSNSQPVIFIPPNEEISFNLVAGRCAATQDPVLAFVGPSATTNKPGTELRVPAGAVLPRPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPEVLTMAGAEEVVDCRTTSFSEHVPHFAAVIDTVGTDTEALAANLLKFKDAAYVSTMPSATRRMQAQGLFQAASTFASVFWGKPDLAPTNVHWLPEKLGLEVISYVLNLAEARHLTMPLTPPTLDDYMDGVVWARDSETQARFGFPAPVAEEGLTDALISSFKKRMREE 403
            L L    + + PA AFQ  + WR RHAPL SVT+    + SQ++HD GN A++T+V+ER ASHT++P ALA HG+LLK++N QPV FIPP+EE+SF++V GR +  ++PVLAFVGP     KPG+ ++VP G VLPRP SLSLEEC LLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFA+QVLRAWGCRVVGVSRRN + L  AGAEE +DCRTTSFSE VP +AAV+DTVGTDTE LAANLL++K AAYVSTMPSATRRMQAQGL QAASTFASVFWGKPDLA T+ HWLPEKLG++VISYVL LAEA+H+ +PL PP+LDDYMDGVVWA+DSETQARFGFPAP+ EEGLT+A +S F+KRM  E
Sbjct:   12 LCLVFTTRSTIPACAFQAASLWRTRHAPLCSVTLGPTGAGSQEQHDEGNGALVTVVVERVASHTVMPSALAAHGKLLKNTNFQPVKFIPPSEEVSFHVVVGR-SPEREPVLAFVGPDIAAGKPGSRIQVPTGVVLPRPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALLKAGAEEAIDCRTTSFSERVPEYAAVVDTVGTDTEGLAANLLRYKKAAYVSTMPSATRRMQAQGLLQAASTFASVFWGKPDLALTDAHWLPEKLGMDVISYVLRLAEAKHVVLPLAPPSLDDYMDGVVWAKDSETQARFGFPAPLPEEGLTEAFLSRFQKRMEGE 389          
BLAST of NO21G01630 vs. NCBI_GenBank
Match: CBN75438.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5 bits (236), Expect = 4.000e-16
Identity = 68/236 (28.81%), Postives = 110/236 (46.61%), Query Frame = 0
Query:  147 GTELRVPAGAVLPRPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPEVLTMAGAEEVVDCRTTSFSEHVPHFAAVIDTVGTDTEALAANLLKFKDAAYVSTMPSATRRMQAQGLFQAASTFASVFWGKPDLAPTNVHWLPEKLGLEVISYVLNLAEARHLTMPLTPPT---LDDYMDGVVWARDSETQARFGFP 380
            G  + V    ++ +P  L  ++ A+LP+ A+S L PL  AG     G S  A     +  G G  A F V VL+AWG RV   + ++       GA+  VD R  S+S+ V  F+AV+DT+G + E     L + + A YVS  PS  +     GL   +      +        +  ++LP    + ++S V  L  A  + +         + +Y++ + W +D++T  RFGFP
Sbjct:  122 GGSVLVEERHLVDKPQGLGWDKAAMLPFLAISCLWPLSEAGF----GDSMDAGQTFVVTGGHGSLAPFVVAVLKAWGGRVALATTKSEGGARALGADLAVDFRKESYSDVVQDFSAVVDTLGREKEGPQDMLKEARGAEYVSLQPSILKVAVEDGLLFGSGKILQ-YQKTVAKDDSRTYFLPNPEAVGLVSQVSALVAAGKVRLGEVGTDYVGMQEYLEALAWPKDTDTGLRFGFP 352          
BLAST of NO21G01630 vs. NCBI_GenBank
Match: XP_010790805.1 (PREDICTED: reticulon-4-interacting protein 1 homolog, mitochondrial-like [Notothenia coriiceps])

HSP 1 Score: 67.8 bits (164), Expect = 8.900e-8
Identity = 56/161 (34.78%), Postives = 77/161 (47.83%), Query Frame = 0
Query:  160 RPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPEVLTMA-GAEEVVDCRTTSFSEH---VPHFAAVIDTVGTDTEALAANLLK-FKDAAYVSTMPSATRRMQAQGLF----QAASTFAS 312
            +P S+S  E A +PY A + L  L+ A   GG      ++ +V I  G G    F++Q+L+AWG  V      N E L    GA+EVVD      SE    +  F  V+D VG +TE LA  LLK +  A YV+ +        + GL     QA S+  S
Sbjct:  179 KPKSVSHAEAASIPYVANTALSALVNA---GGLCRDSSSNKRVLITGGSGGVGTFSIQLLKAWGAHVTVTCSPNAEGLVRGLGADEVVDYTAEDASEQLAMMEKFDVVLDNVGGETEQLALGLLKPWSGAKYVTLVTPLLLNTDSMGLLDGMCQAGSSLQS 336          
BLAST of NO21G01630 vs. NCBI_GenBank
Match: XP_022605806.1 (reticulon-4-interacting protein 1, mitochondrial [Seriola dumerili])

HSP 1 Score: 67.8 bits (164), Expect = 8.900e-8
Identity = 56/167 (33.53%), Postives = 78/167 (46.71%), Query Frame = 0
Query:  154 AGAVLPRPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPEVLTMA-GAEEVVDCRTTSFSE---HVPHFAAVIDTVGTDTEALAANLLK-FKDAAYVST----MPSATRRMQAQGLFQAASTFAS 312
            A  V  +P SLS  E A +PY A +    L+     GG      A  ++ I+ G G    FA+Q+L+AWG  V     +N E    A GA+ VVD       E    +  F  ++D VG  TE  A NLLK +  A YV+     + +  R   A G+ Q A+T A+
Sbjct:  162 ANEVSHKPKSLSHTEAAAIPYVATTAWSALVNT---GGLSKDNCAKKRILILGGSGGVGTFAIQMLKAWGAHVTVTCSQNAEQFVRALGADHVVDYTAGPVEEPLSTLEKFDLILDNVGGGTERWALNLLKPWSGAKYVTLVTPFLQNTDRLGIADGMMQTAATVAT 325          
BLAST of NO21G01630 vs. NCBI_GenBank
Match: WP_068613282.1 (hypothetical protein [Woeseia oceani] >ANO50518.1 hypothetical protein BA177_04195 [Woeseia oceani])

HSP 1 Score: 67.4 bits (163), Expect = 1.200e-7
Identity = 58/179 (32.40%), Postives = 83/179 (46.37%), Query Frame = 0
Query:  121 LVAGRCAATQDPVLAFVGPSATTNKPGTE-------------LRVPAGAVLPRPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAVQVLRAWGCRVVGV-SRRNPEVLTMAGAEEVVDCRTTSFSEHVPHFAAVIDTVGTDTEALAANLLKFKDAA 286
            LV GR AA    V+  VG +    K G E             + V A  +  +P +LS  E A LP+ A++    L+    + G  +   A  KV I    G    FAVQ+++AWG  VVG+ S RN + +   GA+EV+D     FS  +  F    DTVG  ++  +A+L    D A
Sbjct:   66 LVLGRDAA---GVIVQVGKNVAGFKCGDEVYAAPHIGCHAEYVAVDASYIAKKPRNLSYLEAASLPFVALTAWTALVD---NAGFSAENAAGKKVVIPRAAGGVGSFAVQLMKAWGAYVVGLCSERNFDFVRALGADEVIDYTKADFSAQLTAFDCAFDTVGRSSDFESADLRGATDPA 238          
BLAST of NO21G01630 vs. NCBI_GenBank
Match: XP_020443767.1 (reticulon-4-interacting protein 1 homolog, mitochondrial-like [Monopterus albus])

HSP 1 Score: 67.4 bits (163), Expect = 1.200e-7
Identity = 54/159 (33.96%), Postives = 77/159 (48.43%), Query Frame = 0
Query:  160 RPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPEVLTMA-GAEEVVDCRTTSFSEH---VPHFAAVIDTVGTDTEALAANLLK-FKDAAYVSTMPSATRRMQAQGLFQAASTFASVF 314
            +P  L+  E A +PY A + L  L+ A   GG      +  +V I+ G G    F++Q+L+AWG  V     +N E L    GAEEVVD  T   +E    +  F  ++D+VG +TE  A  LLK +  A YV+          + GL   A  F +VF
Sbjct:  179 KPKLLNHTEAASIPYVANTALSALVNA---GGLCRDNSSDKRVLIIGGSGGVGTFSIQLLKAWGAHVTVTCSQNAEGLVRGLGAEEVVDYTTGDAAEQLQVMEKFDVILDSVGRETEQWAVGLLKPWCGAKYVTLATPLLLNTDSMGLLDGA--FNAVF 332          
BLAST of NO21G01630 vs. NCBI_GenBank
Match: XP_005739079.1 (PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Pundamilia nyererei] >XP_014189092.1 PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Haplochromis burtoni] >XP_014186858.1 PREDICTED: reticulon-4-interacting protein 1 homolog, mitochondrial-like [Haplochromis burtoni])

HSP 1 Score: 67.0 bits (162), Expect = 1.500e-7
Identity = 57/167 (34.13%), Postives = 80/167 (47.90%), Query Frame = 0
Query:  154 AGAVLPRPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPE-VLTMAGAEEVVDCRTTSFSE---HVPHFAAVIDTVGTDTEALAANLLK-FKDAAYVST----MPSATRRMQAQGLFQAASTFAS 312
            A  V  +P  LS  E A +PY A +    L+     GG      A+ ++ I+ G G    FAVQ+++AWG  V     +N E  L   GA+ VVD       E    +  F  ++D VG DTE+ A  LLK +  A YV+     M +  R   A G+ Q+A+T AS
Sbjct:  166 ANEVSHKPKCLSHIEAAAIPYVATTAWSALVNT---GGLRKDNCANKRILILGGSGGVGTFAVQMVKAWGAHVTVTCSQNAEQFLRGLGADHVVDYTAGPVEEPLSALEKFDLILDNVGGDTESWALKLLKPWSGAKYVTLVTPFMQNTDRLGVADGMMQSAATVAS 329          
BLAST of NO21G01630 vs. NCBI_GenBank
Match: XP_008287306.1 (PREDICTED: reticulon-4-interacting protein 1 homolog, mitochondrial-like [Stegastes partitus])

HSP 1 Score: 67.0 bits (162), Expect = 1.500e-7
Identity = 53/148 (35.81%), Postives = 71/148 (47.97%), Query Frame = 0
Query:  160 RPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPEVLTMA-GAEEVVDCRTTSFSEH---VPHFAAVIDTVGTDTEALAANLLK-FKDAAYVSTMPSATRRMQAQGL 303
            +P SLS  E A +PY A + L  L+ A   GG      A+ +V I  G G    F++Q+L+AWG  V     +N E L    GA+EVVD      +E    +  F  V D VG DTE  A  LLK +  A YV+ +        + GL
Sbjct:  171 KPKSLSHIEAASIPYVASTALSALVNA---GGLCRDSAANKRVLITGGSGGVGTFSIQLLKAWGAHVTVTCSQNAEGLVRGLGADEVVDYTAGDVAEKLETMDKFDVVFDGVGGDTEQYAMGLLKPWSGAKYVTLVTPLLLNTDSMGL 315          
BLAST of NO21G01630 vs. NCBI_GenBank
Match: XP_024662109.1 (reticulon-4-interacting protein 1, mitochondrial isoform X1 [Maylandia zebra])

HSP 1 Score: 67.0 bits (162), Expect = 1.500e-7
Identity = 57/167 (34.13%), Postives = 80/167 (47.90%), Query Frame = 0
Query:  154 AGAVLPRPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPE-VLTMAGAEEVVDCRTTSFSE---HVPHFAAVIDTVGTDTEALAANLLK-FKDAAYVST----MPSATRRMQAQGLFQAASTFAS 312
            A  V  +P  LS  E A +PY A +    L+     GG      A+ ++ I+ G G    FAVQ+++AWG  V     +N E  L   GA+ VVD       E    +  F  ++D VG DTE+ A  LLK +  A YV+     M +  R   A G+ Q+A+T AS
Sbjct:  166 ANEVSHKPKCLSHIEAAAIPYVATTAWSALVNT---GGLRKDNCANKRILILGGSGGVGTFAVQMVKAWGAHVTVTCSQNAEQFLRGLGADHVVDYTAGPVEEPLSALEKFDLILDNVGGDTESWALKLLKPWSGAKYVTLVTPFMQNTDRLGVADGMMQSAATVAS 329          
BLAST of NO21G01630 vs. NCBI_GenBank
Match: XP_018550612.1 (PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Lates calcarifer])

HSP 1 Score: 67.0 bits (162), Expect = 1.500e-7
Identity = 55/167 (32.93%), Postives = 80/167 (47.90%), Query Frame = 0
Query:  154 AGAVLPRPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPE-VLTMAGAEEVVDCRTTSFSE---HVPHFAAVIDTVGTDTEALAANLLK-FKDAAYVST----MPSATRRMQAQGLFQAASTFAS 312
            A  V  +P SLS  E A +PY A +    L+     GG      +  ++ I+ G G    FA+Q+L+AWG  V     +N E  +   GA++VVD       E    +  F  ++D VG DTE  A NLLK +  A YV+     + +  R   A G+ Q A+T A+
Sbjct:  160 ANEVSHKPKSLSHTEAAAIPYVANTAWSALVNT---GGLNKDNCSKKRILILGGSGGVGTFAIQMLKAWGAHVTVTCSQNAERFVRELGADDVVDYTAGPVEEPLSALEKFDLILDNVGGDTERWALNLLKPWSGAKYVTLVTPFLQNTDRLGIADGMMQTAATVAT 323          
The following BLAST results are available for this feature:
BLAST of NO21G01630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22629.16.100e-15872.56reticulon 4 interacting protein 1 [Nannochloropsis... [more]
CBN75438.14.000e-1628.81conserved unknown protein [Ectocarpus siliculosus][more]
XP_010790805.18.900e-834.78PREDICTED: reticulon-4-interacting protein 1 homol... [more]
XP_022605806.18.900e-833.53reticulon-4-interacting protein 1, mitochondrial [... [more]
WP_068613282.11.200e-732.40hypothetical protein [Woeseia oceani] >ANO50518.1 ... [more]
XP_020443767.11.200e-733.96reticulon-4-interacting protein 1 homolog, mitocho... [more]
XP_005739079.11.500e-734.13PREDICTED: reticulon-4-interacting protein 1, mito... [more]
XP_008287306.11.500e-735.81PREDICTED: reticulon-4-interacting protein 1 homol... [more]
XP_024662109.11.500e-734.13reticulon-4-interacting protein 1, mitochondrial i... [more]
XP_018550612.11.500e-732.93PREDICTED: reticulon-4-interacting protein 1, mito... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL025nonsL025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR060ngnoR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004639NSK004639Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01630.1NO21G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602564gene_8121Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g40gene7796Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01630.1NO21G01630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01630 ID=NO21G01630|Name=NO21G01630|organism=Nannochloropsis oceanica|type=gene|length=1209bp
ATGCGACGAAGAGGAATAATACCACTAGAGCCTACCAAGGCCGTGGCGGC
CAAGCATGTGCTCGGTTTACTCATGCTAAAAGTGCTGCTGCAGCTCTCCA
CGCCAGCAACTGCCTTCCAAACCCCCGCCCCGTGGCGAGTAAGACATGCC
CCTCTGCGCTCCGTAACGATGGCCACGCCGAACTCCGCCTCTCAGCAAAA
GCATGACAACGGCAACGAGGCCATCCTCACAATAGTAATCGAGCGGGCTG
CCTCGCACACCATCTTGCCTGGCGCCTTGGCCACCCACGGACGGCTCCTT
AAAAGCAGCAACTCCCAGCCCGTAATTTTTATCCCGCCGAACGAGGAAAT
CTCCTTCAACTTGGTAGCGGGCCGATGTGCCGCGACTCAAGATCCCGTCC
TAGCCTTTGTCGGACCCTCTGCTACCACCAATAAGCCTGGAACCGAATTG
CGCGTGCCCGCCGGAGCGGTGCTCCCTCGGCCAGCATCATTAAGTTTGGA
AGAATGTGCCTTGTTGCCTTACCATGCTGTGTCTTTGCTTCCACCACTGA
TGCGCGCAGGGATCCACGGAGGGGAGGGATCTTCAGGCCCAGCCTCGTCA
AAGGTTTGCATTGTCACCGGCTGTGGTCCTGCTGCGATATTTGCCGTTCA
AGTGCTGCGTGCGTGGGGTTGCAGAGTAGTGGGTGTGTCACGACGAAATC
CCGAGGTCTTGACAATGGCAGGGGCGGAAGAGGTGGTGGACTGCCGCACC
ACTTCCTTCTCCGAGCACGTTCCCCATTTCGCAGCCGTTATCGATACGGT
CGGCACAGACACTGAGGCTCTCGCGGCCAACTTACTCAAATTCAAAGATG
CTGCTTACGTATCGACCATGCCCTCAGCCACGCGTCGAATGCAGGCTCAA
GGCCTCTTCCAAGCTGCCTCCACGTTCGCATCCGTCTTCTGGGGGAAACC
CGATCTAGCCCCAACTAACGTACACTGGCTCCCGGAAAAGTTGGGATTAG
AAGTAATTTCTTATGTTCTGAACCTGGCGGAAGCGAGGCATTTAACAATG
CCTCTGACCCCTCCCACGCTTGATGACTACATGGATGGAGTCGTGTGGGC
AAGAGATTCGGAGACCCAAGCAAGGTTTGGGTTTCCGGCACCTGTTGCCG
AGGAGGGGCTGACGGATGCGTTGATTTCAAGTTTCAAAAAGAGAATGAGG
GAGGAGTAG
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protein sequence of NO21G01630.1

>NO21G01630.1-protein ID=NO21G01630.1-protein|Name=NO21G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MRRRGIIPLEPTKAVAAKHVLGLLMLKVLLQLSTPATAFQTPAPWRVRHA
PLRSVTMATPNSASQQKHDNGNEAILTIVIERAASHTILPGALATHGRLL
KSSNSQPVIFIPPNEEISFNLVAGRCAATQDPVLAFVGPSATTNKPGTEL
RVPAGAVLPRPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASS
KVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPEVLTMAGAEEVVDCRT
TSFSEHVPHFAAVIDTVGTDTEALAANLLKFKDAAYVSTMPSATRRMQAQ
GLFQAASTFASVFWGKPDLAPTNVHWLPEKLGLEVISYVLNLAEARHLTM
PLTPPTLDDYMDGVVWARDSETQARFGFPAPVAEEGLTDALISSFKKRMR
EE*
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Synonyms
Publications