NO21G01630.1, NO21G01630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01630.1
Unique NameNO21G01630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1209
Alignment locationchr21:484498..485706 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:484498..485706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01630.1 vs.
Match: EWM22629.1 (reticulon 4 interacting protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 566.6 bits (1459), Expect = 6.100e-158
Identity = 275/379 (72.56%), Postives = 320/379 (84.43%), Query Frame = 0 
Query:   24 LMLKVLLQLSTPATAFQTPAPWRVRHAPLRSVTMATPNSASQQKHDNGNEAILTIVIERAASHTILPGALATHGRLLKSSNSQPVIFIPPNEEISFNLVAGRCAATQDPVLAFVGPSATTNKPGTELRVPAGAVLPRPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPEVLTMAGAEEVVDCRTTSFSEHVPHFAAVIDTVGTDTEALAANLLKFKDAAYVSTMPSATRRMQAQGLFQAASTFASVFWGKPDLAPTNVHWLPEKLGLEVISYVLNLAEARHLTMPLTPPTLDDYMDGVVWARDSETQARFGFPAPVAEEGLTDALISSFKKRMREE 403
            L L    + + PA AFQ  + WR RHAPL SVT+    + SQ++HD GN A++T+V+ER ASHT++P ALA HG+LLK++N QPV FIPP+EE+SF++V GR +  ++PVLAFVGP     KPG+ ++VP G VLPRP SLSLEEC LLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFA+QVLRAWGCRVVGVSRRN + L  AGAEE +DCRTTSFSE VP +AAV+DTVGTDTE LAANLL++K AAYVSTMPSATRRMQAQGL QAASTFASVFWGKPDLA T+ HWLPEKLG++VISYVL LAEA+H+ +PL PP+LDDYMDGVVWA+DSETQARFGFPAP+ EEGLT+A +S F+KRM  E
Sbjct:   12 LCLVFTTRSTIPACAFQAASLWRTRHAPLCSVTLGPTGAGSQEQHDEGNGALVTVVVERVASHTVMPSALAAHGKLLKNTNFQPVKFIPPSEEVSFHVVVGR-SPEREPVLAFVGPDIAAGKPGSRIQVPTGVVLPRPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALLKAGAEEAIDCRTTSFSERVPEYAAVVDTVGTDTEGLAANLLRYKKAAYVSTMPSATRRMQAQGLLQAASTFASVFWGKPDLALTDAHWLPEKLGMDVISYVLRLAEAKHVVLPLAPPSLDDYMDGVVWAKDSETQARFGFPAPLPEEGLTEAFLSRFQKRMEGE 389
The following BLAST results are available for this feature:
BLAST of NO21G01630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22629.16.100e-15872.56reticulon 4 interacting protein 1 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01630NO21G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01630.1NO21G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01630.1.cds1NO21G01630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01630.1 ID=NO21G01630.1|Name=NO21G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
ATGCGACGAAGAGGAATAATACCACTAGAGCCTACCAAGGCCGTGGCGGC
CAAGCATGTGCTCGGTTTACTCATGCTAAAAGTGCTGCTGCAGCTCTCCA
CGCCAGCAACTGCCTTCCAAACCCCCGCCCCGTGGCGAGTAAGACATGCC
CCTCTGCGCTCCGTAACGATGGCCACGCCGAACTCCGCCTCTCAGCAAAA
GCATGACAACGGCAACGAGGCCATCCTCACAATAGTAATCGAGCGGGCTG
CCTCGCACACCATCTTGCCTGGCGCCTTGGCCACCCACGGACGGCTCCTT
AAAAGCAGCAACTCCCAGCCCGTAATTTTTATCCCGCCGAACGAGGAAAT
CTCCTTCAACTTGGTAGCGGGCCGATGTGCCGCGACTCAAGATCCCGTCC
TAGCCTTTGTCGGACCCTCTGCTACCACCAATAAGCCTGGAACCGAATTG
CGCGTGCCCGCCGGAGCGGTGCTCCCTCGGCCAGCATCATTAAGTTTGGA
AGAATGTGCCTTGTTGCCTTACCATGCTGTGTCTTTGCTTCCACCACTGA
TGCGCGCAGGGATCCACGGAGGGGAGGGATCTTCAGGCCCAGCCTCGTCA
AAGGTTTGCATTGTCACCGGCTGTGGTCCTGCTGCGATATTTGCCGTTCA
AGTGCTGCGTGCGTGGGGTTGCAGAGTAGTGGGTGTGTCACGACGAAATC
CCGAGGTCTTGACAATGGCAGGGGCGGAAGAGGTGGTGGACTGCCGCACC
ACTTCCTTCTCCGAGCACGTTCCCCATTTCGCAGCCGTTATCGATACGGT
CGGCACAGACACTGAGGCTCTCGCGGCCAACTTACTCAAATTCAAAGATG
CTGCTTACGTATCGACCATGCCCTCAGCCACGCGTCGAATGCAGGCTCAA
GGCCTCTTCCAAGCTGCCTCCACGTTCGCATCCGTCTTCTGGGGGAAACC
CGATCTAGCCCCAACTAACGTACACTGGCTCCCGGAAAAGTTGGGATTAG
AAGTAATTTCTTATGTTCTGAACCTGGCGGAAGCGAGGCATTTAACAATG
CCTCTGACCCCTCCCACGCTTGATGACTACATGGATGGAGTCGTGTGGGC
AAGAGATTCGGAGACCCAAGCAAGGTTTGGGTTTCCGGCACCTGTTGCCG
AGGAGGGGCTGACGGATGCGTTGATTTCAAGTTTCAAAAAGAGAATGAGG
GAGGAGTAG
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protein sequence of NO21G01630.1

>NO21G01630.1-protein ID=NO21G01630.1-protein|Name=NO21G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MRRRGIIPLEPTKAVAAKHVLGLLMLKVLLQLSTPATAFQTPAPWRVRHA
PLRSVTMATPNSASQQKHDNGNEAILTIVIERAASHTILPGALATHGRLL
KSSNSQPVIFIPPNEEISFNLVAGRCAATQDPVLAFVGPSATTNKPGTEL
RVPAGAVLPRPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASS
KVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPEVLTMAGAEEVVDCRT
TSFSEHVPHFAAVIDTVGTDTEALAANLLKFKDAAYVSTMPSATRRMQAQ
GLFQAASTFASVFWGKPDLAPTNVHWLPEKLGLEVISYVLNLAEARHLTM
PLTPPTLDDYMDGVVWARDSETQARFGFPAPVAEEGLTDALISSFKKRMR
EE*
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mRNA from alignment at chr21:484498..485706-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01630.1 ID=NO21G01630.1|Name=NO21G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp|location=Sequence derived from alignment at chr21:484498..485706- (Nannochloropsis oceanica)
ATGCGACGAAGAGGAATAATACCACTAGAGCCTACCAAGGCCGTGGCGGC
CAAGCATGTGCTCGGTTTACTCATGCTAAAAGTGCTGCTGCAGCTCTCCA
CGCCAGCAACTGCCTTCCAAACCCCCGCCCCGTGGCGAGTAAGACATGCC
CCTCTGCGCTCCGTAACGATGGCCACGCCGAACTCCGCCTCTCAGCAAAA
GCATGACAACGGCAACGAGGCCATCCTCACAATAGTAATCGAGCGGGCTG
CCTCGCACACCATCTTGCCTGGCGCCTTGGCCACCCACGGACGGCTCCTT
AAAAGCAGCAACTCCCAGCCCGTAATTTTTATCCCGCCGAACGAGGAAAT
CTCCTTCAACTTGGTAGCGGGCCGATGTGCCGCGACTCAAGATCCCGTCC
TAGCCTTTGTCGGACCCTCTGCTACCACCAATAAGCCTGGAACCGAATTG
CGCGTGCCCGCCGGAGCGGTGCTCCCTCGGCCAGCATCATTAAGTTTGGA
AGAATGTGCCTTGTTGCCTTACCATGCTGTGTCTTTGCTTCCACCACTGA
TGCGCGCAGGGATCCACGGAGGGGAGGGATCTTCAGGCCCAGCCTCGTCA
AAGGTTTGCATTGTCACCGGCTGTGGTCCTGCTGCGATATTTGCCGTTCA
AGTGCTGCGTGCGTGGGGTTGCAGAGTAGTGGGTGTGTCACGACGAAATC
CCGAGGTCTTGACAATGGCAGGGGCGGAAGAGGTGGTGGACTGCCGCACC
ACTTCCTTCTCCGAGCACGTTCCCCATTTCGCAGCCGTTATCGATACGGT
CGGCACAGACACTGAGGCTCTCGCGGCCAACTTACTCAAATTCAAAGATG
CTGCTTACGTATCGACCATGCCCTCAGCCACGCGTCGAATGCAGGCTCAA
GGCCTCTTCCAAGCTGCCTCCACGTTCGCATCCGTCTTCTGGGGGAAACC
CGATCTAGCCCCAACTAACGTACACTGGCTCCCGGAAAAGTTGGGATTAG
AAGTAATTTCTTATGTTCTGAACCTGGCGGAAGCGAGGCATTTAACAATG
CCTCTGACCCCTCCCACGCTTGATGACTACATGGATGGAGTCGTGTGGGC
AAGAGATTCGGAGACCCAAGCAAGGTTTGGGTTTCCGGCACCTGTTGCCG
AGGAGGGGCTGACGGATGCGTTGATTTCAAGTTTCAAAAAGAGAATGAGG
GAGGAGTAG
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Coding sequence (CDS) from alignment at chr21:484498..485706-

>NO21G01630.1 ID=NO21G01630.1|Name=NO21G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr21:484498..485706- (Nannochloropsis oceanica)
ATGCGACGAAGAGGAATAATACCACTAGAGCCTACCAAGGCCGTGGCGGC
CAAGCATGTGCTCGGTTTACTCATGCTAAAAGTGCTGCTGCAGCTCTCCA
CGCCAGCAACTGCCTTCCAAACCCCCGCCCCGTGGCGAGTAAGACATGCC
CCTCTGCGCTCCGTAACGATGGCCACGCCGAACTCCGCCTCTCAGCAAAA
GCATGACAACGGCAACGAGGCCATCCTCACAATAGTAATCGAGCGGGCTG
CCTCGCACACCATCTTGCCTGGCGCCTTGGCCACCCACGGACGGCTCCTT
AAAAGCAGCAACTCCCAGCCCGTAATTTTTATCCCGCCGAACGAGGAAAT
CTCCTTCAACTTGGTAGCGGGCCGATGTGCCGCGACTCAAGATCCCGTCC
TAGCCTTTGTCGGACCCTCTGCTACCACCAATAAGCCTGGAACCGAATTG
CGCGTGCCCGCCGGAGCGGTGCTCCCTCGGCCAGCATCATTAAGTTTGGA
AGAATGTGCCTTGTTGCCTTACCATGCTGTGTCTTTGCTTCCACCACTGA
TGCGCGCAGGGATCCACGGAGGGGAGGGATCTTCAGGCCCAGCCTCGTCA
AAGGTTTGCATTGTCACCGGCTGTGGTCCTGCTGCGATATTTGCCGTTCA
AGTGCTGCGTGCGTGGGGTTGCAGAGTAGTGGGTGTGTCACGACGAAATC
CCGAGGTCTTGACAATGGCAGGGGCGGAAGAGGTGGTGGACTGCCGCACC
ACTTCCTTCTCCGAGCACGTTCCCCATTTCGCAGCCGTTATCGATACGGT
CGGCACAGACACTGAGGCTCTCGCGGCCAACTTACTCAAATTCAAAGATG
CTGCTTACGTATCGACCATGCCCTCAGCCACGCGTCGAATGCAGGCTCAA
GGCCTCTTCCAAGCTGCCTCCACGTTCGCATCCGTCTTCTGGGGGAAACC
CGATCTAGCCCCAACTAACGTACACTGGCTCCCGGAAAAGTTGGGATTAG
AAGTAATTTCTTATGTTCTGAACCTGGCGGAAGCGAGGCATTTAACAATG
CCTCTGACCCCTCCCACGCTTGATGACTACATGGATGGAGTCGTGTGGGC
AAGAGATTCGGAGACCCAAGCAAGGTTTGGGTTTCCGGCACCTGTTGCCG
AGGAGGGGCTGACGGATGCGTTGATTTCAAGTTTCAAAAAGAGAATGAGG
GAGGAGTAG
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Synonyms
Publications